| Definition | Natranaerobius thermophilus JW/NM-WN-LF, complete genome. |
|---|---|
| Accession | NC_010718 |
| Length | 3,165,557 |
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The map label for this gene is pdxK [C]
Identifier: 188586561
GI number: 188586561
Start: 2056539
End: 2057423
Strand: Reverse
Name: pdxK [C]
Synonym: Nther_1948
Alternate gene names: 188586561
Gene position: 2057423-2056539 (Counterclockwise)
Preceding gene: 188586562
Following gene: 188586560
Centisome position: 64.99
GC content: 38.87
Gene sequence:
>885_bases ATGTCGAAAAGAACAGTTAAGAGAGTTGCAGCAATCCACGACCTGGCAGGATTTGGTCGATCTTCTCTAGCTGTAGTAGT GCCAATTATTTCTACCATGGGAAGTCAGGTTTGTTCAGTGCCAACAGCTGTATTATCAACACATACTGGAGGTTTTGAGG AATATAGTTTTGTTGATCTGACGGAAAATATGGTAGATTTTTTTGGCCACTGGAAAAAACTTAATTTAGAATTTGATTGT ATATATAGTGGTTTCTTAGGGTCTCCTCGACAGGTAGATATAATATCAGATTTTATTGACAACTTTGCAGTTAGGAATGG ATATGAAGACACTTTAGTGGTAGTAGATCCAGTAATGGCTGATGACGGACAGTTGTACAGTACCATGGATGAAACCATGG TGAAAAGAATGCGTGATTTGGTCGCTAAAGCGGATATTATCACACCTAATTTTACGGAAGCATGTTTTTTATTGGATGAA CCTTATGATACTAAAGCCGACAAAGATACCATAAAAGATTGGTTATACAAACTTTCTCAAATGGGGCCAGAAAAGGTGAT TATTACCAGTGCTCCTGCTGAAGATCCTCATAAGACTAATGTGGTGGCATATAATAGAGAAGATGGTCGCTATTGGAAAG TTAGCTGTGATTATATCCCTGCCCATTACCCTGGAACGGGAGATGCTTTTACTAGTGTCATTGTTGGAAGTCTGTTACAG GGGGATAACTTACCAATATCCTTAGATCGGGGAGTGCAATTTATAACTGCTGCAATTAGAGCCAGCTATGGTGAAACACT CCCTAAAAGGGAAGGCGTTTTACTAGAGCGAGTTTTAGGTAATTTAAAAATGCCTGTTTTAGTAGGTAGTTACGAGCTTC TATAA
Upstream 100 bases:
>100_bases TATGTTTAAAACACAAAGGATTTTTATTTTTGTTGTCGAAATTACCCTATCAGAAAAGATAAATAAACTATATACCATCT AGCGTAATGGAGGGATTTAA
Downstream 100 bases:
>100_bases AAGAAGCTCGTAACTTATACTGTGGCCCATCGACCTACAGTTTTTGCAGCACTTTTACTTTTATAAAATCTTTTGAAAAT CCGATAATAATAGAGTTCCT
Product: pyridoxamine kinase
Products: ADP; pyridoxal 5'-phosphate
Alternate protein names: Pyridoxamine Kinase; Pyridoxine Kinase; Pyridoxal/Pyridoxine/Pyridoxamine Kinase; Phosphomethylpyrimidine Kinase; Pyridoxine Kinase Family Protein; Pyridoxal Kinase-Like Protein; Pyridoxal Kinase Related Protein; Pyridoxal/Pyridoxine/Pyridoxamine Kinase-Like Protein; Pyridoxamine Kinase PdxY
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MSKRTVKRVAAIHDLAGFGRSSLAVVVPIISTMGSQVCSVPTAVLSTHTGGFEEYSFVDLTENMVDFFGHWKKLNLEFDC IYSGFLGSPRQVDIISDFIDNFAVRNGYEDTLVVVDPVMADDGQLYSTMDETMVKRMRDLVAKADIITPNFTEACFLLDE PYDTKADKDTIKDWLYKLSQMGPEKVIITSAPAEDPHKTNVVAYNREDGRYWKVSCDYIPAHYPGTGDAFTSVIVGSLLQ GDNLPISLDRGVQFITAAIRASYGETLPKREGVLLERVLGNLKMPVLVGSYELL
Sequences:
>Translated_294_residues MSKRTVKRVAAIHDLAGFGRSSLAVVVPIISTMGSQVCSVPTAVLSTHTGGFEEYSFVDLTENMVDFFGHWKKLNLEFDC IYSGFLGSPRQVDIISDFIDNFAVRNGYEDTLVVVDPVMADDGQLYSTMDETMVKRMRDLVAKADIITPNFTEACFLLDE PYDTKADKDTIKDWLYKLSQMGPEKVIITSAPAEDPHKTNVVAYNREDGRYWKVSCDYIPAHYPGTGDAFTSVIVGSLLQ GDNLPISLDRGVQFITAAIRASYGETLPKREGVLLERVLGNLKMPVLVGSYELL >Mature_293_residues SKRTVKRVAAIHDLAGFGRSSLAVVVPIISTMGSQVCSVPTAVLSTHTGGFEEYSFVDLTENMVDFFGHWKKLNLEFDCI YSGFLGSPRQVDIISDFIDNFAVRNGYEDTLVVVDPVMADDGQLYSTMDETMVKRMRDLVAKADIITPNFTEACFLLDEP YDTKADKDTIKDWLYKLSQMGPEKVIITSAPAEDPHKTNVVAYNREDGRYWKVSCDYIPAHYPGTGDAFTSVIVGSLLQG DNLPISLDRGVQFITAAIRASYGETLPKREGVLLERVLGNLKMPVLVGSYELL
Specific function: Phosphorylates B6 Vitamers; Functions In A Salvage Pathway. Uses Pyridoxal, Pyridoxine, And Pyridoxamine As Substrates. [C]
COG id: COG2240
COG function: function code H; Pyridoxal/pyridoxine/pyridoxamine kinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.7.1.35
Molecular weight: Translated: 32602; Mature: 32470
Theoretical pI: Translated: 4.66; Mature: 4.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKRTVKRVAAIHDLAGFGRSSLAVVVPIISTMGSQVCSVPTAVLSTHTGGFEEYSFVDL CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHCHHHHHHCCCCCCCCCEEHHH TENMVDFFGHWKKLNLEFDCIYSGFLGSPRQVDIISDFIDNFAVRNGYEDTLVVVDPVMA HHHHHHHHHCCEEECEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECEEC DDGQLYSTMDETMVKRMRDLVAKADIITPNFTEACFLLDEPYDTKADKDTIKDWLYKLSQ CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH MGPEKVIITSAPAEDPHKTNVVAYNREDGRYWKVSCDYIPAHYPGTGDAFTSVIVGSLLQ CCCCEEEEEECCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHC GDNLPISLDRGVQFITAAIRASYGETLPKREGVLLERVLGNLKMPVLVGSYELL CCCCCEEHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCEEECCEECC >Mature Secondary Structure SKRTVKRVAAIHDLAGFGRSSLAVVVPIISTMGSQVCSVPTAVLSTHTGGFEEYSFVDL CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHCHHHHHHCCCCCCCCCEEHHH TENMVDFFGHWKKLNLEFDCIYSGFLGSPRQVDIISDFIDNFAVRNGYEDTLVVVDPVMA HHHHHHHHHCCEEECEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECEEC DDGQLYSTMDETMVKRMRDLVAKADIITPNFTEACFLLDEPYDTKADKDTIKDWLYKLSQ CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHH MGPEKVIITSAPAEDPHKTNVVAYNREDGRYWKVSCDYIPAHYPGTGDAFTSVIVGSLLQ CCCCEEEEEECCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHC GDNLPISLDRGVQFITAAIRASYGETLPKREGVLLERVLGNLKMPVLVGSYELL CCCCCEEHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCEEECCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; pyridoxal
Specific reaction: ATP + pyridoxal = ADP + pyridoxal 5'-phosphate
General reaction: Phospho group transfer [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA