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The map label for this gene is ymfH [H]

Identifier: 188586510

GI number: 188586510

Start: 1988390

End: 1989694

Strand: Reverse

Name: ymfH [H]

Synonym: Nther_1896

Alternate gene names: 188586510

Gene position: 1989694-1988390 (Counterclockwise)

Preceding gene: 188586511

Following gene: 188586509

Centisome position: 62.85

GC content: 32.87

Gene sequence:

>1305_bases
ATGAGAACCATTGAAAAAACTCAGGAACGATTTCATCCTTTATTAAAAGAAACCATTTATTATGATAAAATATCCCCTGG
ACTTGACACCTATGTATTTCCCAGAAAAGGGTATCAAAAAAAATATGCAGTATATGCAGTGAATTATGGTTCTATTGATA
CACGGTACCGAAATCGTTCTGGTAAAATTGTGAAATTACCTCAAGGTACAGCTCATTTTCTTGAACACAAAATGTTTGAA
CAAAAAGACAGGAATGTGTTTGATGAATTTTCGAAAAAAGGAGCAAGTGCAAATGCATTCACATCATTTGGACACACTGC
ATATCTCTTTAGTGCCACTGAAAATTTTTATGAATGTTTGAATACCTTATTAGACTTTGTTAATGAACCATATTTTACTA
AGGAGAGTGTAGAAAAAGAACAGGGGATAATTTCCCAGGAAATTAGAATGTATCAGGATAATCCAGATTGGAAAGTATTC
TTTAATATGCTTGAAGGAATTTACCATAACCATCCAGTAAATATCAATATAGCTGGAACTGAAGAGGAAATAGGTACTAT
TACTCCTGAATTACTTTATGATTGTCACAAGACTTTTTATCATCCTTCTAATATGGTGTTGTTTATAATTGGTGACCTGG
ATGTAGCTGAAGTTTTTTCTGAAGTTGACAAAAATCTGTCGGCCAAAAACTTATCTCCTAGTTCTGATTTAGACCACAGA
ACTTTACCAAGTGAACCAGAAAGTGTGTTTATGTCACAAAAAACTGATGAACATGACATTTCCAAACCAAGGGCTTATAT
AGGTTTTAAAGATCAAGTGACTAAGCAAACAGAAACTCCCAGTCTGAAAGATGAAATCGTGACAGACTTTTTATTGGAAT
TAATCTTCGGAAAAGGTTCAAAAATTTACCAGTCCTTGTTGGAAGAGGGGCTGATTGACAATCAATTTGAATTTTCGTAT
TCTCATGGAGAAGGTTTTGGTTTTTCCCTAATCGGAGGACCAACGAAGGATCCAGATAAATTAATACATAAACTGGAAAA
AGGGATAGAAACGACATTTGAAGAAGGAATTGACAAAAGGGATTTTCAAAGAATTAAAAACAAATTATTAGGTGATTATA
TCCAGGGATTTAATTCTTTAGAATACCTGGCCAATACCTTTTTAAATTTATATTTTTCAGATGCCTTCCTATTTGATTAC
TCTGAAATTCTTAATCAAATCAGTATCGATGAACTTCATAATCGTTTGGCTAATCATCTGTATACTGAAAACAAAACCAA
ATCTCTACTTTATCCTTCCAATTAG

Upstream 100 bases:

>100_bases
ATGTAGACCGGGATAGAATACTAACTGCTGCTCAAAAAGTAGCATTAGATACAGTTTATATTATGGCAGATGCAAAACAA
GAAAAGGTGGGTGTTACATA

Downstream 100 bases:

>100_bases
ATCTATCCGAAAAATATCATAAAAAAACAGGAAAAAAAGTCAATTTTGCAGAATACTTTATATGCCACAAAAGATATTCC
TATATTTTAGTAAGGATGGG

Product: peptidase M16 domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MRTIEKTQERFHPLLKETIYYDKISPGLDTYVFPRKGYQKKYAVYAVNYGSIDTRYRNRSGKIVKLPQGTAHFLEHKMFE
QKDRNVFDEFSKKGASANAFTSFGHTAYLFSATENFYECLNTLLDFVNEPYFTKESVEKEQGIISQEIRMYQDNPDWKVF
FNMLEGIYHNHPVNINIAGTEEEIGTITPELLYDCHKTFYHPSNMVLFIIGDLDVAEVFSEVDKNLSAKNLSPSSDLDHR
TLPSEPESVFMSQKTDEHDISKPRAYIGFKDQVTKQTETPSLKDEIVTDFLLELIFGKGSKIYQSLLEEGLIDNQFEFSY
SHGEGFGFSLIGGPTKDPDKLIHKLEKGIETTFEEGIDKRDFQRIKNKLLGDYIQGFNSLEYLANTFLNLYFSDAFLFDY
SEILNQISIDELHNRLANHLYTENKTKSLLYPSN

Sequences:

>Translated_434_residues
MRTIEKTQERFHPLLKETIYYDKISPGLDTYVFPRKGYQKKYAVYAVNYGSIDTRYRNRSGKIVKLPQGTAHFLEHKMFE
QKDRNVFDEFSKKGASANAFTSFGHTAYLFSATENFYECLNTLLDFVNEPYFTKESVEKEQGIISQEIRMYQDNPDWKVF
FNMLEGIYHNHPVNINIAGTEEEIGTITPELLYDCHKTFYHPSNMVLFIIGDLDVAEVFSEVDKNLSAKNLSPSSDLDHR
TLPSEPESVFMSQKTDEHDISKPRAYIGFKDQVTKQTETPSLKDEIVTDFLLELIFGKGSKIYQSLLEEGLIDNQFEFSY
SHGEGFGFSLIGGPTKDPDKLIHKLEKGIETTFEEGIDKRDFQRIKNKLLGDYIQGFNSLEYLANTFLNLYFSDAFLFDY
SEILNQISIDELHNRLANHLYTENKTKSLLYPSN
>Mature_434_residues
MRTIEKTQERFHPLLKETIYYDKISPGLDTYVFPRKGYQKKYAVYAVNYGSIDTRYRNRSGKIVKLPQGTAHFLEHKMFE
QKDRNVFDEFSKKGASANAFTSFGHTAYLFSATENFYECLNTLLDFVNEPYFTKESVEKEQGIISQEIRMYQDNPDWKVF
FNMLEGIYHNHPVNINIAGTEEEIGTITPELLYDCHKTFYHPSNMVLFIIGDLDVAEVFSEVDKNLSAKNLSPSSDLDHR
TLPSEPESVFMSQKTDEHDISKPRAYIGFKDQVTKQTETPSLKDEIVTDFLLELIFGKGSKIYQSLLEEGLIDNQFEFSY
SHGEGFGFSLIGGPTKDPDKLIHKLEKGIETTFEEGIDKRDFQRIKNKLLGDYIQGFNSLEYLANTFLNLYFSDAFLFDY
SEILNQISIDELHNRLANHLYTENKTKSLLYPSN

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

Organism=Escherichia coli, GI1787770, Length=193, Percent_Identity=26.9430051813472, Blast_Score=79, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR011765
- InterPro:   IPR007863 [H]

Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]

EC number: 3.4.99.- [C]

Molecular weight: Translated: 50229; Mature: 50229

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTIEKTQERFHPLLKETIYYDKISPGLDTYVFPRKGYQKKYAVYAVNYGSIDTRYRNRS
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEEEEEECCCCCCCEECCC
GKIVKLPQGTAHFLEHKMFEQKDRNVFDEFSKKGASANAFTSFGHTAYLFSATENFYECL
CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEEHHHHHHHHHH
NTLLDFVNEPYFTKESVEKEQGIISQEIRMYQDNPDWKVFFNMLEGIYHNHPVNINIAGT
HHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCC
EEEIGTITPELLYDCHKTFYHPSNMVLFIIGDLDVAEVFSEVDKNLSAKNLSPSSDLDHR
HHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
TLPSEPESVFMSQKTDEHDISKPRAYIGFKDQVTKQTETPSLKDEIVTDFLLELIFGKGS
CCCCCHHHHHHCCCCCCCCCCCCCEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCH
KIYQSLLEEGLIDNQFEFSYSHGEGFGFSLIGGPTKDPDKLIHKLEKGIETTFEEGIDKR
HHHHHHHHCCCCCCCEEEEECCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHH
DFQRIKNKLLGDYIQGFNSLEYLANTFLNLYFSDAFLFDYSEILNQISIDELHNRLANHL
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
YTENKTKSLLYPSN
HCCCCCCCCCCCCC
>Mature Secondary Structure
MRTIEKTQERFHPLLKETIYYDKISPGLDTYVFPRKGYQKKYAVYAVNYGSIDTRYRNRS
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCEEEEEEECCCCCCCEECCC
GKIVKLPQGTAHFLEHKMFEQKDRNVFDEFSKKGASANAFTSFGHTAYLFSATENFYECL
CCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEEHHHHHHHHHH
NTLLDFVNEPYFTKESVEKEQGIISQEIRMYQDNPDWKVFFNMLEGIYHNHPVNINIAGT
HHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCC
EEEIGTITPELLYDCHKTFYHPSNMVLFIIGDLDVAEVFSEVDKNLSAKNLSPSSDLDHR
HHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
TLPSEPESVFMSQKTDEHDISKPRAYIGFKDQVTKQTETPSLKDEIVTDFLLELIFGKGS
CCCCCHHHHHHCCCCCCCCCCCCCEEECCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCH
KIYQSLLEEGLIDNQFEFSYSHGEGFGFSLIGGPTKDPDKLIHKLEKGIETTFEEGIDKR
HHHHHHHHCCCCCCCEEEEECCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCHH
DFQRIKNKLLGDYIQGFNSLEYLANTFLNLYFSDAFLFDYSEILNQISIDELHNRLANHL
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
YTENKTKSLLYPSN
HCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Zn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]