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The map label for this gene is ykfC [H]

Identifier: 188586493

GI number: 188586493

Start: 1966127

End: 1967395

Strand: Reverse

Name: ykfC [H]

Synonym: Nther_1878

Alternate gene names: 188586493

Gene position: 1967395-1966127 (Counterclockwise)

Preceding gene: 188586494

Following gene: 188586492

Centisome position: 62.15

GC content: 37.12

Gene sequence:

>1269_bases
ATGAAGAAATGGTACAGTTTAATAGACAAGATTTATTCCAAAAAGAATCTAGAAGACGCCTACCGCAGGGTCAGAGCTAA
CAAAGGTAAACCCGGCATAGACCAGGTAACCGTGGAGGCTTATGGCTCCAACCTAGAAGAAAATCTGGAAACCCTTCATC
ATGACCTTAAAATTGGCGCATACAAACCACAACCTGTGAGGCGAGTTAAGATACCCAAACCAGATGGAAGTACTCGCCCA
TTAGGGATTCCAACCGTAAAAGACAGGGTAGTCCAACAAGCAACCTTAAATATACTTCAACCGATTTTTGATCCAGACTT
CCACCCGTCAAGCTACGGATACAGGCCTAATCGCTCATGTCACAAAGCAATAGCTAAATCAGAACAGTTCATTAATAAAT
ACAATCTAAGACATGTAGTAGATATGGACCTATCTAAATGCTTTGATAAATTAAACCATGAGTTGATTATCGAAGAAGTA
GCCAAGAAAGTTAGTGATGGAAGTGTTCTCAAATTAATAAAGAAGTTTTTGAAGTCCGGAGTAATGGAAGATGGAGCCAT
AGAAGACACAGAAATAGGGAGCCCTCAAGGTGGAGTGATATCACCACTACTAACCAACATTTACCTAGACAGATTTGATA
AAGAAATGAAGAGTCGCAATATCCGAATAGTAAGATATGCCGATGATATTTTAATATTCGCCTACACACCAAGACAAGCG
AAAAGATATAAAGATATAGCTACTGAAATATTAGAAGACGAATTAAAACTAACAGTTAATAAAGAGAAAACTCACATAAC
AAATGACCGCAAAGGTGTTCCCTACCTAGGAGTTATCATAAGGAGTCAAAACATATCCATCCAGCCTGAAAAGATACAGA
AATTCAAAGAAAAAGTCAGAACTCTTACACCAAGAAATCATGGTAGAAATCTATCCGAAATCATAAAAGAGCTAAATCCA
GTATTAAGAGGATGGGCAAATTACTTCCGAATAGCCAATTGTAAGAAACAATTTGAGAACTTAATGAAATGGATTAGAAG
AAGACTTAGGATGAAGAAAATGCGAGAATGGAAAAGTTGGAAACAACTACACAAAACTCTTCGCAGAAAAGGCTACAAAG
GGGAATTTGAGAAAATCTCCATGAATAAATGGAGAAACTCATCAAGTCCTCTCATAAGTTTAGCACTACCCAATAAGTGG
TTTGACGAGATAGGTCTAATTAATATTAGTACCTATCAAGTTGGTATTTTGCATCACTTTAGAAAGTGA

Upstream 100 bases:

>100_bases
AGATTGCCAAAGAGCTAGAGACACCGTTAAGCACGTTCAAAGAAACCACAACTAAAAGTGTAGAAAGAGGGAAGGCACAC
AGCGAAAGAAGGTGCAATTG

Downstream 100 bases:

>100_bases
TCGAGGTCTACTAGGAGCCGTGTACGTGGCCCGTAAGCACGGTTCTGTGAGAGGAACGAAGCCACAGCTAATTACTGTGG
CTTCTACCTACTCGATATTT

Product: RNA-directed DNA polymerase (Reverse transcriptase)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MKKWYSLIDKIYSKKNLEDAYRRVRANKGKPGIDQVTVEAYGSNLEENLETLHHDLKIGAYKPQPVRRVKIPKPDGSTRP
LGIPTVKDRVVQQATLNILQPIFDPDFHPSSYGYRPNRSCHKAIAKSEQFINKYNLRHVVDMDLSKCFDKLNHELIIEEV
AKKVSDGSVLKLIKKFLKSGVMEDGAIEDTEIGSPQGGVISPLLTNIYLDRFDKEMKSRNIRIVRYADDILIFAYTPRQA
KRYKDIATEILEDELKLTVNKEKTHITNDRKGVPYLGVIIRSQNISIQPEKIQKFKEKVRTLTPRNHGRNLSEIIKELNP
VLRGWANYFRIANCKKQFENLMKWIRRRLRMKKMREWKSWKQLHKTLRRKGYKGEFEKISMNKWRNSSSPLISLALPNKW
FDEIGLINISTYQVGILHHFRK

Sequences:

>Translated_422_residues
MKKWYSLIDKIYSKKNLEDAYRRVRANKGKPGIDQVTVEAYGSNLEENLETLHHDLKIGAYKPQPVRRVKIPKPDGSTRP
LGIPTVKDRVVQQATLNILQPIFDPDFHPSSYGYRPNRSCHKAIAKSEQFINKYNLRHVVDMDLSKCFDKLNHELIIEEV
AKKVSDGSVLKLIKKFLKSGVMEDGAIEDTEIGSPQGGVISPLLTNIYLDRFDKEMKSRNIRIVRYADDILIFAYTPRQA
KRYKDIATEILEDELKLTVNKEKTHITNDRKGVPYLGVIIRSQNISIQPEKIQKFKEKVRTLTPRNHGRNLSEIIKELNP
VLRGWANYFRIANCKKQFENLMKWIRRRLRMKKMREWKSWKQLHKTLRRKGYKGEFEKISMNKWRNSSSPLISLALPNKW
FDEIGLINISTYQVGILHHFRK
>Mature_422_residues
MKKWYSLIDKIYSKKNLEDAYRRVRANKGKPGIDQVTVEAYGSNLEENLETLHHDLKIGAYKPQPVRRVKIPKPDGSTRP
LGIPTVKDRVVQQATLNILQPIFDPDFHPSSYGYRPNRSCHKAIAKSEQFINKYNLRHVVDMDLSKCFDKLNHELIIEEV
AKKVSDGSVLKLIKKFLKSGVMEDGAIEDTEIGSPQGGVISPLLTNIYLDRFDKEMKSRNIRIVRYADDILIFAYTPRQA
KRYKDIATEILEDELKLTVNKEKTHITNDRKGVPYLGVIIRSQNISIQPEKIQKFKEKVRTLTPRNHGRNLSEIIKELNP
VLRGWANYFRIANCKKQFENLMKWIRRRLRMKKMREWKSWKQLHKTLRRKGYKGEFEKISMNKWRNSSSPLISLALPNKW
FDEIGLINISTYQVGILHHFRK

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=318, Percent_Identity=26.7295597484277, Blast_Score=133, Evalue=4e-32,
Organism=Saccharomyces cerevisiae, GI6226520, Length=329, Percent_Identity=30.6990881458967, Blast_Score=131, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 49395; Mature: 49395

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKWYSLIDKIYSKKNLEDAYRRVRANKGKPGIDQVTVEAYGSNLEENLETLHHDLKIGA
CCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHEEHHHHCCCHHHHHHHHHHHHHCCC
YKPQPVRRVKIPKPDGSTRPLGIPTVKDRVVQQATLNILQPIFDPDFHPSSYGYRPNRSC
CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
HKAIAKSEQFINKYNLRHVVDMDLSKCFDKLNHELIIEEVAKKVSDGSVLKLIKKFLKSG
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
VMEDGAIEDTEIGSPQGGVISPLLTNIYLDRFDKEMKSRNIRIVRYADDILIFAYTPRQA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEEEEEECCHHH
KRYKDIATEILEDELKLTVNKEKTHITNDRKGVPYLGVIIRSQNISIQPEKIQKFKEKVR
HHHHHHHHHHHHHHHHEEECCCHHCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHH
TLTPRNHGRNLSEIIKELNPVLRGWANYFRIANCKKQFENLMKWIRRRLRMKKMREWKSW
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQLHKTLRRKGYKGEFEKISMNKWRNSSSPLISLALPNKWFDEIGLINISTYQVGILHHF
HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEECCCHHHHHCCCEEECHHHHHHHHHH
RK
CC
>Mature Secondary Structure
MKKWYSLIDKIYSKKNLEDAYRRVRANKGKPGIDQVTVEAYGSNLEENLETLHHDLKIGA
CCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHEEHHHHCCCHHHHHHHHHHHHHCCC
YKPQPVRRVKIPKPDGSTRPLGIPTVKDRVVQQATLNILQPIFDPDFHPSSYGYRPNRSC
CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
HKAIAKSEQFINKYNLRHVVDMDLSKCFDKLNHELIIEEVAKKVSDGSVLKLIKKFLKSG
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC
VMEDGAIEDTEIGSPQGGVISPLLTNIYLDRFDKEMKSRNIRIVRYADDILIFAYTPRQA
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEEEEEECCHHH
KRYKDIATEILEDELKLTVNKEKTHITNDRKGVPYLGVIIRSQNISIQPEKIQKFKEKVR
HHHHHHHHHHHHHHHHEEECCCHHCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHH
TLTPRNHGRNLSEIIKELNPVLRGWANYFRIANCKKQFENLMKWIRRRLRMKKMREWKSW
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KQLHKTLRRKGYKGEFEKISMNKWRNSSSPLISLALPNKWFDEIGLINISTYQVGILHHF
HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEEECCCHHHHHCCCEEECHHHHHHHHHH
RK
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]