Click here to switch to the map view.

The map label for this gene is yjiM [C]

Identifier: 188586387

GI number: 188586387

Start: 1838915

End: 1839991

Strand: Reverse

Name: yjiM [C]

Synonym: Nther_1772

Alternate gene names: 188586387

Gene position: 1839991-1838915 (Counterclockwise)

Preceding gene: 188586388

Following gene: 188586386

Centisome position: 58.13

GC content: 29.62

Gene sequence:

>1077_bases
GTGAGCAAAGAAACCCAAAAAGTCGCCTGGTTATGTACTTACATACCTGAAGAAATAATCCATGCAGCTGGATTCCAACC
TTATCGATTAGTGCCAGGTGAGATTGATCAAAAGGGGAACTGCAAAACTCTACCGTCAAATTTTTGTCCTTATGTTAAAG
AAGTAGCTGCAGCTTTAGAAAAAGGAGTTTATAACGACTTTATAAGTGGTTTTGTAGTGTCTAATTCTTGTAATGCCATG
ATACACCTTTACAATGTACTTAAGGAAATGAGTTCCGATGATCAGTTTGTTTACTTACTAGACCTTCCGCGAAAAAATAG
TGAAACTGGTATTGAATATTACAATAGACAATTAGAAGAATTATATAACTTTTTATATAAAAATAGAACAAATAAAAACT
CTGTTGAGGAACAAACTGAAAATTTGAAACAATCACTCAAGTTATATAGTGAAACTCAGAAATTATTACAAAGTATTAAT
TATAAATTATATAGAATTCAAAAAGATATTATTGATCTAAGCATACAAATAGCCAATAATGATAGGAAAAATGTAAATGA
TTTTATATCACACCAAATTCAACAGGGAGCAGATTATAAAAATTCTACAATATTATTAACAGGTGGAATAATATCTAGGG
AAATTAATAGATCATTAATTGAAAATAGTGATTACCCATTAATGCCAGAAAATTGTATGGGACTCCGCTATCTAATGAAA
AGTGATTTAGCTAATATTGAGGACCAACACTTAGAACAGTTAACAAAACAACAGATTCTAGGGCTAATTGCCAAATCGTA
TTTAAACAAGCCAGAATGTCCTAGAACCTTTACAGTTACTCCTGATATTGGCCGTGTAAATTATTTAAAATATTTGATAA
ATCAATTTGATGTAAAAGGAGTTATACATCATGATTTAGGATTCTGTGATCTTAGTAATTATGATTATTTAATTATACAA
GATTTATTTTCAAAATATAATATACCAGTCTTAAAAATAAATTCCGAGCTAGGTGAAAGGGAGATAGGCCAAATTAAGAC
TAGAGTAGAAGCTTTTTATGAGATGAATTTAATTTGA

Upstream 100 bases:

>100_bases
CTGCCTTATTAGCTGAACAATTTATAGCAAAAAGTCGAGCGAATTAGTCTTTGCTTAATAATATAAGAGATTAGACAAAT
ATATGGATGGGAGTGGTTCG

Downstream 100 bases:

>100_bases
AAAGTCGTCACGCACTCTCGTGACTTTAGTCATGAGAGGTTCACTTAGATTGAATAACTTGTTTAAGATTTAGATATCTA
ATGATAGTAAAAATTGATAG

Product: 2-hydroxyglutaryl-CoA dehydratase D-component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 357

Protein sequence:

>358_residues
MSKETQKVAWLCTYIPEEIIHAAGFQPYRLVPGEIDQKGNCKTLPSNFCPYVKEVAAALEKGVYNDFISGFVVSNSCNAM
IHLYNVLKEMSSDDQFVYLLDLPRKNSETGIEYYNRQLEELYNFLYKNRTNKNSVEEQTENLKQSLKLYSETQKLLQSIN
YKLYRIQKDIIDLSIQIANNDRKNVNDFISHQIQQGADYKNSTILLTGGIISREINRSLIENSDYPLMPENCMGLRYLMK
SDLANIEDQHLEQLTKQQILGLIAKSYLNKPECPRTFTVTPDIGRVNYLKYLINQFDVKGVIHHDLGFCDLSNYDYLIIQ
DLFSKYNIPVLKINSELGEREIGQIKTRVEAFYEMNLI

Sequences:

>Translated_358_residues
MSKETQKVAWLCTYIPEEIIHAAGFQPYRLVPGEIDQKGNCKTLPSNFCPYVKEVAAALEKGVYNDFISGFVVSNSCNAM
IHLYNVLKEMSSDDQFVYLLDLPRKNSETGIEYYNRQLEELYNFLYKNRTNKNSVEEQTENLKQSLKLYSETQKLLQSIN
YKLYRIQKDIIDLSIQIANNDRKNVNDFISHQIQQGADYKNSTILLTGGIISREINRSLIENSDYPLMPENCMGLRYLMK
SDLANIEDQHLEQLTKQQILGLIAKSYLNKPECPRTFTVTPDIGRVNYLKYLINQFDVKGVIHHDLGFCDLSNYDYLIIQ
DLFSKYNIPVLKINSELGEREIGQIKTRVEAFYEMNLI
>Mature_357_residues
SKETQKVAWLCTYIPEEIIHAAGFQPYRLVPGEIDQKGNCKTLPSNFCPYVKEVAAALEKGVYNDFISGFVVSNSCNAMI
HLYNVLKEMSSDDQFVYLLDLPRKNSETGIEYYNRQLEELYNFLYKNRTNKNSVEEQTENLKQSLKLYSETQKLLQSINY
KLYRIQKDIIDLSIQIANNDRKNVNDFISHQIQQGADYKNSTILLTGGIISREINRSLIENSDYPLMPENCMGLRYLMKS
DLANIEDQHLEQLTKQQILGLIAKSYLNKPECPRTFTVTPDIGRVNYLKYLINQFDVKGVIHHDLGFCDLSNYDYLIIQD
LFSKYNIPVLKINSELGEREIGQIKTRVEAFYEMNLI

Specific function: Unknown

COG id: COG1775

COG function: function code E; Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yjiM [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010327 [H]

Pfam domain/function: PF06050 HGD-D [H]

EC number: NA

Molecular weight: Translated: 41503; Mature: 41372

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKETQKVAWLCTYIPEEIIHAAGFQPYRLVPGEIDQKGNCKTLPSNFCPYVKEVAAALE
CCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
KGVYNDFISGFVVSNSCNAMIHLYNVLKEMSSDDQFVYLLDLPRKNSETGIEYYNRQLEE
HHHHHHHHHCEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH
LYNFLYKNRTNKNSVEEQTENLKQSLKLYSETQKLLQSINYKLYRIQKDIIDLSIQIANN
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHEEEEEECCC
DRKNVNDFISHQIQQGADYKNSTILLTGGIISREINRSLIENSDYPLMPENCMGLRYLMK
CCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
SDLANIEDQHLEQLTKQQILGLIAKSYLNKPECPRTFTVTPDIGRVNYLKYLINQFDVKG
HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCE
VIHHDLGFCDLSNYDYLIIQDLFSKYNIPVLKINSELGEREIGQIKTRVEAFYEMNLI
EHHCCCCEEECCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKETQKVAWLCTYIPEEIIHAAGFQPYRLVPGEIDQKGNCKTLPSNFCPYVKEVAAALE
CCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
KGVYNDFISGFVVSNSCNAMIHLYNVLKEMSSDDQFVYLLDLPRKNSETGIEYYNRQLEE
HHHHHHHHHCEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHH
LYNFLYKNRTNKNSVEEQTENLKQSLKLYSETQKLLQSINYKLYRIQKDIIDLSIQIANN
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHEEEEEECCC
DRKNVNDFISHQIQQGADYKNSTILLTGGIISREINRSLIENSDYPLMPENCMGLRYLMK
CCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
SDLANIEDQHLEQLTKQQILGLIAKSYLNKPECPRTFTVTPDIGRVNYLKYLINQFDVKG
HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCE
VIHHDLGFCDLSNYDYLIIQDLFSKYNIPVLKINSELGEREIGQIKTRVEAFYEMNLI
EHHCCCCEEECCCCCCHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]