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The map label for this gene is ybbK [C]

Identifier: 188586358

GI number: 188586358

Start: 1806815

End: 1807690

Strand: Reverse

Name: ybbK [C]

Synonym: Nther_1741

Alternate gene names: 188586358

Gene position: 1807690-1806815 (Counterclockwise)

Preceding gene: 188586359

Following gene: 188586357

Centisome position: 57.1

GC content: 38.47

Gene sequence:

>876_bases
ATGTTACCTCAGTACTTTGGATTACTGGGTGGAGCTTTATTAGTAATTATCCTTTTAAGCATGGCCATTCAAATTATCAA
TGAGTACGAGCGTGGTGTAACATTTCGATTGGGTAGACTTATAGGAACTAAGGGGCCAGGCCTGATTGTAATTATCCCTA
TAATTGATCGTTTAGTACGAGTTACCTTGAGAACTGTTGTATACGATGTTCCAGTGCAAGAAGTAATTACCAGGGATAAT
GTTACTTGCAAAGTTAATGCAGTTCTTTATTACCGGGTAGTAGCTCCTGAAAAAGCTGTGGTCAATGTCCAAAGGTATCA
TGAGGCAACAATTCAACTAGCTCAAACAACCTTAAGAAGTGTAGTAGGTGAAGCTGACTTAGATGAACTGTTATCAGAAC
GGGAAAAGCTCAATCAGAAACTACAAAAAATTATAGATGAAGCTACCGATCCTTGGGGAATTAAAGTTACTACAGTTGAA
ATTAAAGACGTAATGATTCCTGAGGCCATGCAAAGAACCATTGCTCGCCAGGCAGAAGCAGAAAGGCGTAAAAGAGCTGT
TATTATTCAAGCTGATGGAGAGCGACAAGCAGCTGTTCAATTGGCCAGGGCGGCGGATATATTGTCTAAACAAGAAGGCG
GTTTAACATTGAGAACACTAAGGACGGCTTCTGAGATTTCTGCAGAAAAAAGTTCAAGTATCTTTTTCCCACTACCTATG
GAATTTGGAGGCTTATTATCACGTATAGACCTTGATGAATTGATAAATAAATCCTCGGCTCGAGAGTCTTCAGAACAAGA
TCATAATTTAGAAAATGAAAGTTTAAATGAAGAGCACCATGATGAGAAAAAACAAGAGGAAAATGATAATGAATAA

Upstream 100 bases:

>100_bases
GAAGTTGAGGAGTAACAGGGGGCGGACATTGAGTAAATAACAGAATTTTGTTTAAAACCAAATAATGACGGATTATACAA
ACTTTTAGGGAGGGGAGTTT

Downstream 100 bases:

>100_bases
TAACAATAAAATATAATGTTGGTAAATCAAAGCTAGGAACTGAAGAAAAGTTCCTAGCTTTTTTTGGAATAAAATCTCAA
TAAACAAGTCAAACTAAAAT

Product: SPFH domain, Band 7 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MLPQYFGLLGGALLVIILLSMAIQIINEYERGVTFRLGRLIGTKGPGLIVIIPIIDRLVRVTLRTVVYDVPVQEVITRDN
VTCKVNAVLYYRVVAPEKAVVNVQRYHEATIQLAQTTLRSVVGEADLDELLSEREKLNQKLQKIIDEATDPWGIKVTTVE
IKDVMIPEAMQRTIARQAEAERRKRAVIIQADGERQAAVQLARAADILSKQEGGLTLRTLRTASEISAEKSSSIFFPLPM
EFGGLLSRIDLDELINKSSARESSEQDHNLENESLNEEHHDEKKQEENDNE

Sequences:

>Translated_291_residues
MLPQYFGLLGGALLVIILLSMAIQIINEYERGVTFRLGRLIGTKGPGLIVIIPIIDRLVRVTLRTVVYDVPVQEVITRDN
VTCKVNAVLYYRVVAPEKAVVNVQRYHEATIQLAQTTLRSVVGEADLDELLSEREKLNQKLQKIIDEATDPWGIKVTTVE
IKDVMIPEAMQRTIARQAEAERRKRAVIIQADGERQAAVQLARAADILSKQEGGLTLRTLRTASEISAEKSSSIFFPLPM
EFGGLLSRIDLDELINKSSARESSEQDHNLENESLNEEHHDEKKQEENDNE
>Mature_291_residues
MLPQYFGLLGGALLVIILLSMAIQIINEYERGVTFRLGRLIGTKGPGLIVIIPIIDRLVRVTLRTVVYDVPVQEVITRDN
VTCKVNAVLYYRVVAPEKAVVNVQRYHEATIQLAQTTLRSVVGEADLDELLSEREKLNQKLQKIIDEATDPWGIKVTTVE
IKDVMIPEAMQRTIARQAEAERRKRAVIIQADGERQAAVQLARAADILSKQEGGLTLRTLRTASEISAEKSSSIFFPLPM
EFGGLLSRIDLDELINKSSARESSEQDHNLENESLNEEHHDEKKQEENDNE

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI21686995, Length=234, Percent_Identity=48.2905982905983, Blast_Score=203, Evalue=2e-52,
Organism=Homo sapiens, GI221316744, Length=235, Percent_Identity=48.0851063829787, Blast_Score=202, Evalue=2e-52,
Organism=Homo sapiens, GI38016911, Length=238, Percent_Identity=45.7983193277311, Blast_Score=200, Evalue=1e-51,
Organism=Homo sapiens, GI7657615, Length=243, Percent_Identity=34.5679012345679, Blast_Score=147, Evalue=1e-35,
Organism=Homo sapiens, GI7305503, Length=191, Percent_Identity=39.2670157068063, Blast_Score=142, Evalue=4e-34,
Organism=Homo sapiens, GI20149563, Length=159, Percent_Identity=32.7044025157233, Blast_Score=91, Evalue=1e-18,
Organism=Escherichia coli, GI1786697, Length=188, Percent_Identity=37.7659574468085, Blast_Score=145, Evalue=4e-36,
Organism=Caenorhabditis elegans, GI17569493, Length=230, Percent_Identity=49.5652173913044, Blast_Score=219, Evalue=1e-57,
Organism=Caenorhabditis elegans, GI193209764, Length=235, Percent_Identity=48.936170212766, Blast_Score=219, Evalue=2e-57,
Organism=Caenorhabditis elegans, GI71987612, Length=249, Percent_Identity=43.3734939759036, Blast_Score=199, Evalue=1e-51,
Organism=Caenorhabditis elegans, GI25153583, Length=249, Percent_Identity=43.3734939759036, Blast_Score=199, Evalue=1e-51,
Organism=Caenorhabditis elegans, GI71987621, Length=248, Percent_Identity=43.5483870967742, Blast_Score=196, Evalue=8e-51,
Organism=Caenorhabditis elegans, GI17569499, Length=223, Percent_Identity=45.7399103139013, Blast_Score=190, Evalue=9e-49,
Organism=Caenorhabditis elegans, GI17570459, Length=246, Percent_Identity=41.4634146341463, Blast_Score=189, Evalue=1e-48,
Organism=Caenorhabditis elegans, GI71989948, Length=226, Percent_Identity=46.9026548672566, Blast_Score=189, Evalue=1e-48,
Organism=Caenorhabditis elegans, GI17569497, Length=249, Percent_Identity=39.7590361445783, Blast_Score=186, Evalue=2e-47,
Organism=Caenorhabditis elegans, GI32566490, Length=232, Percent_Identity=44.3965517241379, Blast_Score=181, Evalue=4e-46,
Organism=Caenorhabditis elegans, GI17570161, Length=233, Percent_Identity=43.3476394849785, Blast_Score=181, Evalue=5e-46,
Organism=Caenorhabditis elegans, GI193210507, Length=233, Percent_Identity=43.3476394849785, Blast_Score=181, Evalue=5e-46,
Organism=Caenorhabditis elegans, GI71989955, Length=183, Percent_Identity=49.7267759562842, Blast_Score=161, Evalue=3e-40,
Organism=Caenorhabditis elegans, GI32564147, Length=184, Percent_Identity=40.2173913043478, Blast_Score=132, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI71989963, Length=121, Percent_Identity=49.5867768595041, Blast_Score=120, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI17542664, Length=150, Percent_Identity=30, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI18860517, Length=239, Percent_Identity=49.7907949790795, Blast_Score=214, Evalue=8e-56,
Organism=Drosophila melanogaster, GI45556022, Length=232, Percent_Identity=49.1379310344828, Blast_Score=211, Evalue=3e-55,
Organism=Drosophila melanogaster, GI24657857, Length=240, Percent_Identity=48.3333333333333, Blast_Score=203, Evalue=1e-52,
Organism=Drosophila melanogaster, GI281365664, Length=240, Percent_Identity=48.3333333333333, Blast_Score=202, Evalue=2e-52,
Organism=Drosophila melanogaster, GI62484448, Length=240, Percent_Identity=48.3333333333333, Blast_Score=202, Evalue=3e-52,
Organism=Drosophila melanogaster, GI62484274, Length=240, Percent_Identity=48.3333333333333, Blast_Score=201, Evalue=4e-52,
Organism=Drosophila melanogaster, GI28573263, Length=239, Percent_Identity=39.7489539748954, Blast_Score=176, Evalue=2e-44,
Organism=Drosophila melanogaster, GI281361633, Length=238, Percent_Identity=38.2352941176471, Blast_Score=172, Evalue=2e-43,
Organism=Drosophila melanogaster, GI281361631, Length=238, Percent_Identity=38.2352941176471, Blast_Score=172, Evalue=2e-43,
Organism=Drosophila melanogaster, GI21356845, Length=233, Percent_Identity=36.480686695279, Blast_Score=169, Evalue=1e-42,
Organism=Drosophila melanogaster, GI45550506, Length=185, Percent_Identity=37.8378378378378, Blast_Score=139, Evalue=2e-33,
Organism=Drosophila melanogaster, GI281361635, Length=179, Percent_Identity=37.9888268156425, Blast_Score=132, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 32693; Mature: 32693

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPQYFGLLGGALLVIILLSMAIQIINEYERGVTFRLGRLIGTKGPGLIVIIPIIDRLVR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEHHHHHHHHH
VTLRTVVYDVPVQEVITRDNVTCKVNAVLYYRVVAPEKAVVNVQRYHEATIQLAQTTLRS
HHHHHHHHHCCHHHHHHCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
VVGEADLDELLSEREKLNQKLQKIIDEATDPWGIKVTTVEIKDVMIPEAMQRTIARQAEA
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHH
ERRKRAVIIQADGERQAAVQLARAADILSKQEGGLTLRTLRTASEISAEKSSSIFFPLPM
HHHHCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEEECCH
EFGGLLSRIDLDELINKSSARESSEQDHNLENESLNEEHHDEKKQEENDNE
HHHHHHHHCCHHHHHCHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLPQYFGLLGGALLVIILLSMAIQIINEYERGVTFRLGRLIGTKGPGLIVIIPIIDRLVR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEEHHHHHHHHH
VTLRTVVYDVPVQEVITRDNVTCKVNAVLYYRVVAPEKAVVNVQRYHEATIQLAQTTLRS
HHHHHHHHHCCHHHHHHCCCCEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
VVGEADLDELLSEREKLNQKLQKIIDEATDPWGIKVTTVEIKDVMIPEAMQRTIARQAEA
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHH
ERRKRAVIIQADGERQAAVQLARAADILSKQEGGLTLRTLRTASEISAEKSSSIFFPLPM
HHHHCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEEECCH
EFGGLLSRIDLDELINKSSARESSEQDHNLENESLNEEHHDEKKQEENDNE
HHHHHHHHCCHHHHHCHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]