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The map label for this gene is ybbK [C]

Identifier: 188586357

GI number: 188586357

Start: 1805911

End: 1806681

Strand: Reverse

Name: ybbK [C]

Synonym: Nther_1740

Alternate gene names: 188586357

Gene position: 1806681-1805911 (Counterclockwise)

Preceding gene: 188586358

Following gene: 188586355

Centisome position: 57.07

GC content: 35.93

Gene sequence:

>771_bases
GTGCTTAATTTTTTAGCAATAATCTTAGTTTTACTGCTAGTCTTAACTTTACTTGGCATGGCAGTAAGAATTTTCGCTGA
GTACGAACGAGGAGTGACCTTTCGCCTGGGAAGATTTGTAGGAACAAAAGGACCTGGTTTAATATTTATTATTCCATTTA
TAGATAGAATCGAAAAAGTATCATTACGGACTGTAGTTTATGACGTGCCGGTCCAAGAAGTAATTACTAAAGATAATGTA
ACTTGTAGAGTGAACGCTGTTTTGTACTATCGGGTGGTAGAACCTAAAAATGCTGTAATTAATGTTCAAAGATTTCATGA
GGCAACTATTCAACTATCTCAAACTACATTGCGCAGTGTGGTAGGAGACGCTGAATTTGATGAATTACTTTCAGAAAGAG
AAAAGTTAAATCAAAAATTGCAACAGATTATTGATCAGGCTACTGATCCCTGGGGAATTAAAGTCACTACCGTTGAAATT
AAAGATGTCACTATCCCAGATAGTATTCAAAGGTCTATTGGAAGGCAAGCCGAAGCTGAACGAAGAAGAAGGGCAGTTAT
AATTCAAGCTGAAGGAGAAAAACAAGCAGCTAAGGAATTAGCAGAAGCGGCTGATATATTATCTAAACAAAAAGGTGGTT
TAACGTTAAGGTCATTAAGAACTGCTCTTGAAATGTCTGCCGAAAAAGGTAATACCATTTATTTTCCCTTTCCTATGGAA
TTTACTAGTTTAATGAATTTAATAGGCGGGGAAGAAAACGAAGAAAAATAG

Upstream 100 bases:

>100_bases
TAGGAACTGAAGAAAAGTTCCTAGCTTTTTTTGGAATAAAATCTCAATAAACAAGTCAAACTAAAATTAGGAAATTTTAG
GACTCAGGGGGATGATAATA

Downstream 100 bases:

>100_bases
GAAAAATTAAGGACCCTGTTCAGGGTCCTTTTTTAGTTGGCGCTGTTTTATTTTGTTGTAGATACCGTTGTCAACAGTGA
ACTTTAATACAGACTTTTAG

Product: SPFH domain, Band 7 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MLNFLAIILVLLLVLTLLGMAVRIFAEYERGVTFRLGRFVGTKGPGLIFIIPFIDRIEKVSLRTVVYDVPVQEVITKDNV
TCRVNAVLYYRVVEPKNAVINVQRFHEATIQLSQTTLRSVVGDAEFDELLSEREKLNQKLQQIIDQATDPWGIKVTTVEI
KDVTIPDSIQRSIGRQAEAERRRRAVIIQAEGEKQAAKELAEAADILSKQKGGLTLRSLRTALEMSAEKGNTIYFPFPME
FTSLMNLIGGEENEEK

Sequences:

>Translated_256_residues
MLNFLAIILVLLLVLTLLGMAVRIFAEYERGVTFRLGRFVGTKGPGLIFIIPFIDRIEKVSLRTVVYDVPVQEVITKDNV
TCRVNAVLYYRVVEPKNAVINVQRFHEATIQLSQTTLRSVVGDAEFDELLSEREKLNQKLQQIIDQATDPWGIKVTTVEI
KDVTIPDSIQRSIGRQAEAERRRRAVIIQAEGEKQAAKELAEAADILSKQKGGLTLRSLRTALEMSAEKGNTIYFPFPME
FTSLMNLIGGEENEEK
>Mature_256_residues
MLNFLAIILVLLLVLTLLGMAVRIFAEYERGVTFRLGRFVGTKGPGLIFIIPFIDRIEKVSLRTVVYDVPVQEVITKDNV
TCRVNAVLYYRVVEPKNAVINVQRFHEATIQLSQTTLRSVVGDAEFDELLSEREKLNQKLQQIIDQATDPWGIKVTTVEI
KDVTIPDSIQRSIGRQAEAERRRRAVIIQAEGEKQAAKELAEAADILSKQKGGLTLRSLRTALEMSAEKGNTIYFPFPME
FTSLMNLIGGEENEEK

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI221316744, Length=256, Percent_Identity=43.75, Blast_Score=196, Evalue=1e-50,
Organism=Homo sapiens, GI21686995, Length=256, Percent_Identity=43.75, Blast_Score=196, Evalue=1e-50,
Organism=Homo sapiens, GI38016911, Length=239, Percent_Identity=44.7698744769874, Blast_Score=195, Evalue=3e-50,
Organism=Homo sapiens, GI7657615, Length=255, Percent_Identity=34.5098039215686, Blast_Score=146, Evalue=2e-35,
Organism=Homo sapiens, GI7305503, Length=188, Percent_Identity=40.9574468085106, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI20149563, Length=160, Percent_Identity=30.625, Blast_Score=94, Evalue=9e-20,
Organism=Escherichia coli, GI1786697, Length=197, Percent_Identity=41.1167512690355, Blast_Score=159, Evalue=1e-40,
Organism=Caenorhabditis elegans, GI17569493, Length=247, Percent_Identity=44.1295546558704, Blast_Score=207, Evalue=4e-54,
Organism=Caenorhabditis elegans, GI193209764, Length=237, Percent_Identity=45.5696202531646, Blast_Score=206, Evalue=1e-53,
Organism=Caenorhabditis elegans, GI71987612, Length=245, Percent_Identity=43.265306122449, Blast_Score=201, Evalue=2e-52,
Organism=Caenorhabditis elegans, GI25153583, Length=245, Percent_Identity=43.265306122449, Blast_Score=201, Evalue=3e-52,
Organism=Caenorhabditis elegans, GI71987621, Length=245, Percent_Identity=43.265306122449, Blast_Score=200, Evalue=5e-52,
Organism=Caenorhabditis elegans, GI17569499, Length=236, Percent_Identity=46.1864406779661, Blast_Score=199, Evalue=1e-51,
Organism=Caenorhabditis elegans, GI17570459, Length=244, Percent_Identity=45.4918032786885, Blast_Score=199, Evalue=1e-51,
Organism=Caenorhabditis elegans, GI71989948, Length=226, Percent_Identity=46.0176991150442, Blast_Score=190, Evalue=6e-49,
Organism=Caenorhabditis elegans, GI17569497, Length=247, Percent_Identity=39.6761133603239, Blast_Score=187, Evalue=4e-48,
Organism=Caenorhabditis elegans, GI17570161, Length=247, Percent_Identity=42.1052631578947, Blast_Score=182, Evalue=1e-46,
Organism=Caenorhabditis elegans, GI193210507, Length=247, Percent_Identity=42.1052631578947, Blast_Score=182, Evalue=1e-46,
Organism=Caenorhabditis elegans, GI32566490, Length=227, Percent_Identity=44.4933920704846, Blast_Score=181, Evalue=4e-46,
Organism=Caenorhabditis elegans, GI71989955, Length=184, Percent_Identity=47.2826086956522, Blast_Score=155, Evalue=2e-38,
Organism=Caenorhabditis elegans, GI32564147, Length=185, Percent_Identity=40, Blast_Score=132, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI71989963, Length=121, Percent_Identity=47.1074380165289, Blast_Score=115, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17542664, Length=161, Percent_Identity=28.5714285714286, Blast_Score=77, Evalue=6e-15,
Organism=Drosophila melanogaster, GI18860517, Length=236, Percent_Identity=48.728813559322, Blast_Score=212, Evalue=2e-55,
Organism=Drosophila melanogaster, GI45556022, Length=246, Percent_Identity=45.9349593495935, Blast_Score=210, Evalue=7e-55,
Organism=Drosophila melanogaster, GI24657857, Length=243, Percent_Identity=46.5020576131687, Blast_Score=204, Evalue=6e-53,
Organism=Drosophila melanogaster, GI62484448, Length=243, Percent_Identity=46.5020576131687, Blast_Score=203, Evalue=1e-52,
Organism=Drosophila melanogaster, GI281365664, Length=243, Percent_Identity=46.5020576131687, Blast_Score=202, Evalue=1e-52,
Organism=Drosophila melanogaster, GI62484274, Length=243, Percent_Identity=46.5020576131687, Blast_Score=202, Evalue=1e-52,
Organism=Drosophila melanogaster, GI21356845, Length=237, Percent_Identity=40.9282700421941, Blast_Score=193, Evalue=9e-50,
Organism=Drosophila melanogaster, GI281361631, Length=237, Percent_Identity=40.9282700421941, Blast_Score=181, Evalue=4e-46,
Organism=Drosophila melanogaster, GI281361633, Length=237, Percent_Identity=40.9282700421941, Blast_Score=181, Evalue=5e-46,
Organism=Drosophila melanogaster, GI28573263, Length=238, Percent_Identity=38.2352941176471, Blast_Score=179, Evalue=2e-45,
Organism=Drosophila melanogaster, GI281361635, Length=180, Percent_Identity=41.6666666666667, Blast_Score=141, Evalue=4e-34,
Organism=Drosophila melanogaster, GI45550506, Length=189, Percent_Identity=38.6243386243386, Blast_Score=139, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 28850; Mature: 28850

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNFLAIILVLLLVLTLLGMAVRIFAEYERGVTFRLGRFVGTKGPGLIFIIPFIDRIEKV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHCCCCCCEEEEEHHHHHHHHH
SLRTVVYDVPVQEVITKDNVTCRVNAVLYYRVVEPKNAVINVQRFHEATIQLSQTTLRSV
HHHHHEEECCHHHHHCCCCCEEEEEEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHH
VGDAEFDELLSEREKLNQKLQQIIDQATDPWGIKVTTVEIKDVTIPDSIQRSIGRQAEAE
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCHHHHHHHCCHHHHH
RRRRAVIIQAEGEKQAAKELAEAADILSKQKGGLTLRSLRTALEMSAEKGNTIYFPFPME
HHHCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCHH
FTSLMNLIGGEENEEK
HHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLNFLAIILVLLLVLTLLGMAVRIFAEYERGVTFRLGRFVGTKGPGLIFIIPFIDRIEKV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHCCCCCCEEEEEHHHHHHHHH
SLRTVVYDVPVQEVITKDNVTCRVNAVLYYRVVEPKNAVINVQRFHEATIQLSQTTLRSV
HHHHHEEECCHHHHHCCCCCEEEEEEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHH
VGDAEFDELLSEREKLNQKLQQIIDQATDPWGIKVTTVEIKDVTIPDSIQRSIGRQAEAE
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCHHHHHHHCCHHHHH
RRRRAVIIQAEGEKQAAKELAEAADILSKQKGGLTLRSLRTALEMSAEKGNTIYFPFPME
HHHCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCHH
FTSLMNLIGGEENEEK
HHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]