Click here to switch to the map view.

The map label for this gene is ykwD [H]

Identifier: 188586240

GI number: 188586240

Start: 1702332

End: 1703111

Strand: Reverse

Name: ykwD [H]

Synonym: Nther_1623

Alternate gene names: 188586240

Gene position: 1703111-1702332 (Counterclockwise)

Preceding gene: 188586241

Following gene: 188586239

Centisome position: 53.8

GC content: 34.1

Gene sequence:

>780_bases
TTGAAAAAAGTAGTTTTAACTTTAATAATGACTTTAGTATTAGGTTTAACCTTTGGAAGCACTGTATCAGCTTATTCCGA
TTCTTTAACAAGAGAGGAATGGTCTCAATGGTGGAGTAGGGGCTTTGATACTAGTAGTGTAGATCAAGAACCTGAAGAGA
CTAGTGATGAGGAAGAAGTAAAAGAAGTAGAGAAGGATTATCAAGATAATGCTTCTAATGAACAAGACGAAGAAAAACAA
AAAGAAGAAAAGGACGACGACACCCAATCATACTCTGGAAGATTTAATTGGTTAATTAATGAATTATTTAATAAAGATAA
TTCAAAGGATAATCAAGAAGAATCTCAAAAAGGTAAAAAAGATTCCCATGCTGATGTAGGTAATGGGGTTGATGGTATGA
CAGAAGAAGAACAAAAAATGTTTGAAAAAGTTAATAAAGAAAGAGCACAACAAGGGCTTGAACCTTATGAATTTAGTCCT
GAACTCAGTGAAGTTGCCCGCAAAAAGTCTTTAGATATGGTAGAAAATGATTATTTTGATCATGAATCACCTACATATGG
TAGCCCCGGGGAAATGGTACGAAATCAAGGATATCAATTTTCTCTAATTAGAGAAAATATCGCAACTGCTGGAAGCATTA
CAACTGCACATGCACAATTAATGGCAAGTTCTGCACATAGATCTGCTATTCTAGGTAGTAATTACACTTATGTTGGTATT
GGAGTAGTAGAAACTGAACGTGGAGGAGTCATGATAACGCAATTATTTGGAAAAAAATAA

Upstream 100 bases:

>100_bases
ACAATTTTCAATAAGACAACCATAGTAACAAATAACTATTTTGCAATAACGATTTGTTTTAGTTAAGCTGATAAAAAATT
AAGGTGTAGGAGGGATAGTT

Downstream 100 bases:

>100_bases
AATACTCAAATGGCCATCATAAAGCCCTGTGGCGGTAATAGGTTAAATCCTGAAAAGAGCTTGGGTCTTTTCAGGATTTT
TATTTGTTGTTACAATAACA

Product: SCP-like extracellular

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MKKVVLTLIMTLVLGLTFGSTVSAYSDSLTREEWSQWWSRGFDTSSVDQEPEETSDEEEVKEVEKDYQDNASNEQDEEKQ
KEEKDDDTQSYSGRFNWLINELFNKDNSKDNQEESQKGKKDSHADVGNGVDGMTEEEQKMFEKVNKERAQQGLEPYEFSP
ELSEVARKKSLDMVENDYFDHESPTYGSPGEMVRNQGYQFSLIRENIATAGSITTAHAQLMASSAHRSAILGSNYTYVGI
GVVETERGGVMITQLFGKK

Sequences:

>Translated_259_residues
MKKVVLTLIMTLVLGLTFGSTVSAYSDSLTREEWSQWWSRGFDTSSVDQEPEETSDEEEVKEVEKDYQDNASNEQDEEKQ
KEEKDDDTQSYSGRFNWLINELFNKDNSKDNQEESQKGKKDSHADVGNGVDGMTEEEQKMFEKVNKERAQQGLEPYEFSP
ELSEVARKKSLDMVENDYFDHESPTYGSPGEMVRNQGYQFSLIRENIATAGSITTAHAQLMASSAHRSAILGSNYTYVGI
GVVETERGGVMITQLFGKK
>Mature_259_residues
MKKVVLTLIMTLVLGLTFGSTVSAYSDSLTREEWSQWWSRGFDTSSVDQEPEETSDEEEVKEVEKDYQDNASNEQDEEKQ
KEEKDDDTQSYSGRFNWLINELFNKDNSKDNQEESQKGKKDSHADVGNGVDGMTEEEQKMFEKVNKERAQQGLEPYEFSP
ELSEVARKKSLDMVENDYFDHESPTYGSPGEMVRNQGYQFSLIRENIATAGSITTAHAQLMASSAHRSAILGSNYTYVGI
GVVETERGGVMITQLFGKK

Specific function: Unknown

COG id: COG2340

COG function: function code S; Uncharacterized protein with SCP/PR1 domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SCP domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014044
- InterPro:   IPR014258 [H]

Pfam domain/function: PF00188 SCP [H]

EC number: NA

Molecular weight: Translated: 29325; Mature: 29325

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVVLTLIMTLVLGLTFGSTVSAYSDSLTREEWSQWWSRGFDTSSVDQEPEETSDEEEV
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
KEVEKDYQDNASNEQDEEKQKEEKDDDTQSYSGRFNWLINELFNKDNSKDNQEESQKGKK
HHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHCCC
DSHADVGNGVDGMTEEEQKMFEKVNKERAQQGLEPYEFSPELSEVARKKSLDMVENDYFD
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
HESPTYGSPGEMVRNQGYQFSLIRENIATAGSITTAHAQLMASSAHRSAILGSNYTYVGI
CCCCCCCCCHHHHHCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
GVVETERGGVMITQLFGKK
EEEEECCCCEEEHHHHCCC
>Mature Secondary Structure
MKKVVLTLIMTLVLGLTFGSTVSAYSDSLTREEWSQWWSRGFDTSSVDQEPEETSDEEEV
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
KEVEKDYQDNASNEQDEEKQKEEKDDDTQSYSGRFNWLINELFNKDNSKDNQEESQKGKK
HHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHCCC
DSHADVGNGVDGMTEEEQKMFEKVNKERAQQGLEPYEFSPELSEVARKKSLDMVENDYFD
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
HESPTYGSPGEMVRNQGYQFSLIRENIATAGSITTAHAQLMASSAHRSAILGSNYTYVGI
CCCCCCCCCHHHHHCCCCEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
GVVETERGGVMITQLFGKK
EEEEECCCCEEEHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]