Definition | Natranaerobius thermophilus JW/NM-WN-LF, complete genome. |
---|---|
Accession | NC_010718 |
Length | 3,165,557 |
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The map label for this gene is selB [H]
Identifier: 188585740
GI number: 188585740
Start: 1180650
End: 1182551
Strand: Direct
Name: selB [H]
Synonym: Nther_1114
Alternate gene names: 188585740
Gene position: 1180650-1182551 (Clockwise)
Preceding gene: 188585739
Following gene: 188585741
Centisome position: 37.3
GC content: 37.54
Gene sequence:
>1902_bases ATGCATCATGTGATAGGTACAGCAGGCCATGTGGATCATGGAAAAACTAAGTTGATAGAGGCGTTAACGGGAGAAGATAC CGACCGCCTACAAGAGGAAAAGGATCGAGGGATTTCCGTAGACTTAGGATTTGCTCCATTTAAGCTTCCTAGTGGTAGCA TAGCTGGGGTGGTTGATGTTCCCGGACATGAAAAATTCATTCATAATATGCTTGCTGGAATTGCAGGAATAGATTTGGTT ATTTTAGTAATTGACGTGAATGAGGGAATCATGCCTCAGACTAAAGAACATATTGCAATTATGGAGTTACTGGAAATTAA ATCTGGTATAATTGTTCTCACTAAAGTAGATCAGGCAGAAGAGGAATGGATTGAACTTATGCAGGAAGAAGTCAGAGAAA GCTTATCCCAAACATTTCTAAAAGATGCCCCTCTTATAAAGACCTCTGTGGTTTCAGGAAAAGGAGTTTCAGAGTTAAAA GAATTAATTGACGATAAATTGCAGCAAGTCCCTCCTAAGGATGAAGGTGGGCCTGTTCGCATGCCTATTGACAGGGCATT TAAGATATCTGGGTTTGGAACTGTAGTAACAGGCACTCTGTTTTCAGGAACCATAGATAAAGGTGATGAACTTGAGATAG TTCCTAGTGAGACTAAAACACGAGCAAGGCAGATTCAAGTCCATGGGAAACAAGTCGATAAAGGACGGGCAGGACAGAGA TTAGCCATTAACATTCCCAATGTTTCGGCGGAGAATTTGGAAAGGGGCTATGTATTATCGGAACCAAGTTATTTTAAGGA AGTGTCAAAATGTGATGTCAGAGTGAATATGCTACAAGATATAGATTGGGAACTTAAAAATGGTTCACCTGTACATCTTC ATGTAGGAGCGGGAGAGACCGTGGCCAGAATATACTTTTATGGGCAGAAAAAATTACAACCGGGGGAGAGTTCATTAGCA CAATTGAGATTGGAAAAGCCCCTTGCTATATTTAGAAAAGATAGATTTATTATTAGATCATACTCTCCTGTTACCACTAT CGGTGGCGGATTAGTTTTAGAGCATGATGCTAACAAAAAACCTTTAAGTTCACAAAAAGTTATTGATCACTTACTAGCTC TGGAGAAAGGTGATCCTAGTGAATTAGTTAATCAAGTTGTCAAAACTAAAAAAATTGTTTCTTTGGATAAAATCGCTAAA GAAACAGGTGTTTTAGGTGAAGATCTTAATTCTATTGTTAAAGGACTATCTGAAGGTCAAAAATTGGTTACTTTAGGGGA CTACGTGATTGATTTCGAGAAAATCCAGTATTTAACTCAGCAGATAATTGAATCCCTCAATGAATTCCAAAAAAATTATC CCTTACGTCCTGGGAAGCCAAAAGCAGAGATTATAAGCTTCCTGGTCAAATCTGGTATGGATGAGAAAGCATCCATGATT TTATTAGAACAGCTCCAAAAAGACAGTAAGATAAAGGTGGAAAATGATCATATTAGCTTACCAGATTTCAAACCTGAACC AACTAATGAACAAAAACAGTTACTGAAAGAAATTGAAGATAAATATGCAAACCAAGGTTTTCGTCCTCCAGCTTTAGAAG ATATCTCTAATGATTTGAAAATATCTAAGGATATGACAAGAGAATTGTTTGAATACCTGGTAATGGTGGGGACAATGATA AAAATTACCGATAATTATTATATGCTAGCTCAAGATGTAGACAAAGCCAAACAGCTGCTGAAAGATCATTTTTCTGATCA AGATACACTGTCCATTGGAGAATGGAGAGATATATTGGATACTACTCGAAAGTACGCCTTACCTTTACTGGAATATTTTG ACAGAATAAAACTAACTAGACGTCAGGAAGATGTTAGAGTCTATCTGGGAAACAACGAGTAA
Upstream 100 bases:
>100_bases ACTGGAATTTTTATTGAAAAGAATCAACTTTACAAATACTGTTTTCTGATTTTTGAATGACAAATAAAATTAAAAATTAA TAAACGGCAGGTGATCCGTC
Downstream 100 bases:
>100_bases CAGCAATATTGAAAGAACTGCATCTACTACTAAAGATTCTCTACGTAAAGGAGGTGAATTTATGGGTGAAGAAAAAAATA AGCAAGCAGAAAATAAGGAG
Product: selenocysteine-specific translation elongation factor
Products: NA
Alternate protein names: SelB translation factor [H]
Number of amino acids: Translated: 633; Mature: 633
Protein sequence:
>633_residues MHHVIGTAGHVDHGKTKLIEALTGEDTDRLQEEKDRGISVDLGFAPFKLPSGSIAGVVDVPGHEKFIHNMLAGIAGIDLV ILVIDVNEGIMPQTKEHIAIMELLEIKSGIIVLTKVDQAEEEWIELMQEEVRESLSQTFLKDAPLIKTSVVSGKGVSELK ELIDDKLQQVPPKDEGGPVRMPIDRAFKISGFGTVVTGTLFSGTIDKGDELEIVPSETKTRARQIQVHGKQVDKGRAGQR LAINIPNVSAENLERGYVLSEPSYFKEVSKCDVRVNMLQDIDWELKNGSPVHLHVGAGETVARIYFYGQKKLQPGESSLA QLRLEKPLAIFRKDRFIIRSYSPVTTIGGGLVLEHDANKKPLSSQKVIDHLLALEKGDPSELVNQVVKTKKIVSLDKIAK ETGVLGEDLNSIVKGLSEGQKLVTLGDYVIDFEKIQYLTQQIIESLNEFQKNYPLRPGKPKAEIISFLVKSGMDEKASMI LLEQLQKDSKIKVENDHISLPDFKPEPTNEQKQLLKEIEDKYANQGFRPPALEDISNDLKISKDMTRELFEYLVMVGTMI KITDNYYMLAQDVDKAKQLLKDHFSDQDTLSIGEWRDILDTTRKYALPLLEYFDRIKLTRRQEDVRVYLGNNE
Sequences:
>Translated_633_residues MHHVIGTAGHVDHGKTKLIEALTGEDTDRLQEEKDRGISVDLGFAPFKLPSGSIAGVVDVPGHEKFIHNMLAGIAGIDLV ILVIDVNEGIMPQTKEHIAIMELLEIKSGIIVLTKVDQAEEEWIELMQEEVRESLSQTFLKDAPLIKTSVVSGKGVSELK ELIDDKLQQVPPKDEGGPVRMPIDRAFKISGFGTVVTGTLFSGTIDKGDELEIVPSETKTRARQIQVHGKQVDKGRAGQR LAINIPNVSAENLERGYVLSEPSYFKEVSKCDVRVNMLQDIDWELKNGSPVHLHVGAGETVARIYFYGQKKLQPGESSLA QLRLEKPLAIFRKDRFIIRSYSPVTTIGGGLVLEHDANKKPLSSQKVIDHLLALEKGDPSELVNQVVKTKKIVSLDKIAK ETGVLGEDLNSIVKGLSEGQKLVTLGDYVIDFEKIQYLTQQIIESLNEFQKNYPLRPGKPKAEIISFLVKSGMDEKASMI LLEQLQKDSKIKVENDHISLPDFKPEPTNEQKQLLKEIEDKYANQGFRPPALEDISNDLKISKDMTRELFEYLVMVGTMI KITDNYYMLAQDVDKAKQLLKDHFSDQDTLSIGEWRDILDTTRKYALPLLEYFDRIKLTRRQEDVRVYLGNNE >Mature_633_residues MHHVIGTAGHVDHGKTKLIEALTGEDTDRLQEEKDRGISVDLGFAPFKLPSGSIAGVVDVPGHEKFIHNMLAGIAGIDLV ILVIDVNEGIMPQTKEHIAIMELLEIKSGIIVLTKVDQAEEEWIELMQEEVRESLSQTFLKDAPLIKTSVVSGKGVSELK ELIDDKLQQVPPKDEGGPVRMPIDRAFKISGFGTVVTGTLFSGTIDKGDELEIVPSETKTRARQIQVHGKQVDKGRAGQR LAINIPNVSAENLERGYVLSEPSYFKEVSKCDVRVNMLQDIDWELKNGSPVHLHVGAGETVARIYFYGQKKLQPGESSLA QLRLEKPLAIFRKDRFIIRSYSPVTTIGGGLVLEHDANKKPLSSQKVIDHLLALEKGDPSELVNQVVKTKKIVSLDKIAK ETGVLGEDLNSIVKGLSEGQKLVTLGDYVIDFEKIQYLTQQIIESLNEFQKNYPLRPGKPKAEIISFLVKSGMDEKASMI LLEQLQKDSKIKVENDHISLPDFKPEPTNEQKQLLKEIEDKYANQGFRPPALEDISNDLKISKDMTRELFEYLVMVGTMI KITDNYYMLAQDVDKAKQLLKDHFSDQDTLSIGEWRDILDTTRKYALPLLEYFDRIKLTRRQEDVRVYLGNNE
Specific function: Translation factor necessary for the incorporation of selenocysteine into proteins. It probably replaces EF-Tu for the insertion of selenocysteine directed by the UGA codon. SelB binds GTP and GDP [H]
COG id: COG3276
COG function: function code J; Selenocysteine-specific translation elongation factor
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. SelB subfamily [H]
Homologues:
Organism=Homo sapiens, GI34147630, Length=384, Percent_Identity=30.2083333333333, Blast_Score=157, Evalue=3e-38, Organism=Homo sapiens, GI54607086, Length=345, Percent_Identity=28.695652173913, Blast_Score=146, Evalue=6e-35, Organism=Homo sapiens, GI5729864, Length=375, Percent_Identity=26.4, Blast_Score=106, Evalue=7e-23, Organism=Homo sapiens, GI223555963, Length=375, Percent_Identity=26.4, Blast_Score=105, Evalue=9e-23, Organism=Homo sapiens, GI4503507, Length=256, Percent_Identity=29.6875, Blast_Score=98, Evalue=3e-20, Organism=Homo sapiens, GI194097354, Length=261, Percent_Identity=28.3524904214559, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI194018520, Length=261, Percent_Identity=28.3524904214559, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI194018522, Length=261, Percent_Identity=28.3524904214559, Blast_Score=96, Evalue=1e-19, Organism=Homo sapiens, GI46094014, Length=261, Percent_Identity=29.1187739463602, Blast_Score=95, Evalue=2e-19, Organism=Homo sapiens, GI53729339, Length=270, Percent_Identity=27.7777777777778, Blast_Score=76, Evalue=8e-14, Organism=Homo sapiens, GI53729337, Length=270, Percent_Identity=27.7777777777778, Blast_Score=76, Evalue=8e-14, Organism=Homo sapiens, GI45593140, Length=392, Percent_Identity=22.1938775510204, Blast_Score=72, Evalue=2e-12, Organism=Escherichia coli, GI2367247, Length=625, Percent_Identity=28.64, Blast_Score=280, Evalue=2e-76, Organism=Escherichia coli, GI1790412, Length=382, Percent_Identity=31.9371727748691, Blast_Score=137, Evalue=2e-33, Organism=Escherichia coli, GI1789737, Length=382, Percent_Identity=31.9371727748691, Blast_Score=137, Evalue=2e-33, Organism=Escherichia coli, GI1789108, Length=232, Percent_Identity=24.5689655172414, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI48994988, Length=246, Percent_Identity=27.6422764227642, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI25141371, Length=378, Percent_Identity=32.2751322751323, Blast_Score=166, Evalue=5e-41, Organism=Caenorhabditis elegans, GI17556456, Length=390, Percent_Identity=27.9487179487179, Blast_Score=127, Evalue=2e-29, Organism=Caenorhabditis elegans, GI17506081, Length=352, Percent_Identity=28.4090909090909, Blast_Score=116, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17552884, Length=270, Percent_Identity=25.9259259259259, Blast_Score=102, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17569207, Length=270, Percent_Identity=25.9259259259259, Blast_Score=102, Evalue=6e-22, Organism=Caenorhabditis elegans, GI17509919, Length=270, Percent_Identity=29.2592592592593, Blast_Score=99, Evalue=7e-21, Organism=Caenorhabditis elegans, GI32566303, Length=239, Percent_Identity=26.7782426778243, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI115532067, Length=221, Percent_Identity=28.5067873303167, Blast_Score=89, Evalue=6e-18, Organism=Caenorhabditis elegans, GI115532065, Length=221, Percent_Identity=28.5067873303167, Blast_Score=89, Evalue=1e-17, Organism=Caenorhabditis elegans, GI32566629, Length=266, Percent_Identity=25.187969924812, Blast_Score=86, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17565438, Length=297, Percent_Identity=24.2424242424242, Blast_Score=72, Evalue=8e-13, Organism=Saccharomyces cerevisiae, GI6324761, Length=297, Percent_Identity=32.996632996633, Blast_Score=142, Evalue=1e-34, Organism=Saccharomyces cerevisiae, GI6325337, Length=276, Percent_Identity=29.3478260869565, Blast_Score=106, Evalue=9e-24, Organism=Saccharomyces cerevisiae, GI6319594, Length=276, Percent_Identity=29.3478260869565, Blast_Score=106, Evalue=9e-24, Organism=Saccharomyces cerevisiae, GI6320863, Length=256, Percent_Identity=29.6875, Blast_Score=101, Evalue=3e-22, Organism=Saccharomyces cerevisiae, GI6322937, Length=327, Percent_Identity=26.2996941896024, Blast_Score=85, Evalue=4e-17, Organism=Saccharomyces cerevisiae, GI6320377, Length=263, Percent_Identity=25.0950570342205, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI281363316, Length=384, Percent_Identity=28.90625, Blast_Score=150, Evalue=2e-36, Organism=Drosophila melanogaster, GI17864358, Length=384, Percent_Identity=28.90625, Blast_Score=150, Evalue=2e-36, Organism=Drosophila melanogaster, GI19922690, Length=320, Percent_Identity=30.9375, Blast_Score=148, Evalue=1e-35, Organism=Drosophila melanogaster, GI19921738, Length=285, Percent_Identity=32.280701754386, Blast_Score=138, Evalue=1e-32, Organism=Drosophila melanogaster, GI24647046, Length=256, Percent_Identity=29.296875, Blast_Score=109, Evalue=5e-24, Organism=Drosophila melanogaster, GI24647048, Length=256, Percent_Identity=29.296875, Blast_Score=108, Evalue=9e-24, Organism=Drosophila melanogaster, GI45553807, Length=269, Percent_Identity=27.1375464684015, Blast_Score=104, Evalue=2e-22, Organism=Drosophila melanogaster, GI45553816, Length=269, Percent_Identity=27.1375464684015, Blast_Score=104, Evalue=2e-22, Organism=Drosophila melanogaster, GI24651721, Length=269, Percent_Identity=27.1375464684015, Blast_Score=104, Evalue=2e-22, Organism=Drosophila melanogaster, GI17864154, Length=269, Percent_Identity=27.1375464684015, Blast_Score=104, Evalue=2e-22, Organism=Drosophila melanogaster, GI24652838, Length=269, Percent_Identity=26.0223048327138, Blast_Score=102, Evalue=6e-22, Organism=Drosophila melanogaster, GI17137572, Length=269, Percent_Identity=26.0223048327138, Blast_Score=102, Evalue=6e-22, Organism=Drosophila melanogaster, GI17137380, Length=307, Percent_Identity=27.6872964169381, Blast_Score=91, Evalue=2e-18, Organism=Drosophila melanogaster, GI45550900, Length=344, Percent_Identity=22.093023255814, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI28572034, Length=215, Percent_Identity=27.4418604651163, Blast_Score=67, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015189 - InterPro: IPR015190 - InterPro: IPR015191 - InterPro: IPR000795 - InterPro: IPR005225 - InterPro: IPR009001 - InterPro: IPR004161 - InterPro: IPR009000 - InterPro: IPR004535 - InterPro: IPR011991 [H]
Pfam domain/function: PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2; PF09105 SelB-wing_1; PF09106 SelB-wing_2; PF09107 SelB-wing_3 [H]
EC number: NA
Molecular weight: Translated: 71024; Mature: 71024
Theoretical pI: Translated: 5.40; Mature: 5.40
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHHVIGTAGHVDHGKTKLIEALTGEDTDRLQEEKDRGISVDLGFAPFKLPSGSIAGVVDV CCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEC PGHEKFIHNMLAGIAGIDLVILVIDVNEGIMPQTKEHIAIMELLEIKSGIIVLTKVDQAE CCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHH EEWIELMQEEVRESLSQTFLKDAPLIKTSVVSGKGVSELKELIDDKLQQVPPKDEGGPVR HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEE MPIDRAFKISGFGTVVTGTLFSGTIDKGDELEIVPSETKTRARQIQVHGKQVDKGRAGQR CCCCCEEEECCCCCEEEHHHEECCCCCCCCEEEECCHHHHHHHHEEECCCCCCCCCCCCE LAINIPNVSAENLERGYVLSEPSYFKEVSKCDVRVNMLQDIDWELKNGSPVHLHVGAGET EEEECCCCCHHHCCCCEEECCCHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEECCCCE VARIYFYGQKKLQPGESSLAQLRLEKPLAIFRKDRFIIRSYSPVTTIGGGLVLEHDANKK EEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCHHCCCCCEEEECCCCCC PLSSQKVIDHLLALEKGDPSELVNQVVKTKKIVSLDKIAKETGVLGEDLNSIVKGLSEGQ CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC KLVTLGDYVIDFEKIQYLTQQIIESLNEFQKNYPLRPGKPKAEIISFLVKSGMDEKASMI EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHH LLEQLQKDSKIKVENDHISLPDFKPEPTNEQKQLLKEIEDKYANQGFRPPALEDISNDLK HHHHHCCCCCEEEECCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH ISKDMTRELFEYLVMVGTMIKITDNYYMLAQDVDKAKQLLKDHFSDQDTLSIGEWRDILD HHHHHHHHHHHHHHHHCCCEEEECCEEEEHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHH TTRKYALPLLEYFDRIKLTRRQEDVRVYLGNNE HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC >Mature Secondary Structure MHHVIGTAGHVDHGKTKLIEALTGEDTDRLQEEKDRGISVDLGFAPFKLPSGSIAGVVDV CCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEEC PGHEKFIHNMLAGIAGIDLVILVIDVNEGIMPQTKEHIAIMELLEIKSGIIVLTKVDQAE CCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHH EEWIELMQEEVRESLSQTFLKDAPLIKTSVVSGKGVSELKELIDDKLQQVPPKDEGGPVR HHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEE MPIDRAFKISGFGTVVTGTLFSGTIDKGDELEIVPSETKTRARQIQVHGKQVDKGRAGQR CCCCCEEEECCCCCEEEHHHEECCCCCCCCEEEECCHHHHHHHHEEECCCCCCCCCCCCE LAINIPNVSAENLERGYVLSEPSYFKEVSKCDVRVNMLQDIDWELKNGSPVHLHVGAGET EEEECCCCCHHHCCCCEEECCCHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEECCCCE VARIYFYGQKKLQPGESSLAQLRLEKPLAIFRKDRFIIRSYSPVTTIGGGLVLEHDANKK EEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHCCCEEEECCCCHHCCCCCEEEECCCCCC PLSSQKVIDHLLALEKGDPSELVNQVVKTKKIVSLDKIAKETGVLGEDLNSIVKGLSEGQ CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC KLVTLGDYVIDFEKIQYLTQQIIESLNEFQKNYPLRPGKPKAEIISFLVKSGMDEKASMI EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCHHHHHH LLEQLQKDSKIKVENDHISLPDFKPEPTNEQKQLLKEIEDKYANQGFRPPALEDISNDLK HHHHHCCCCCEEEECCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH ISKDMTRELFEYLVMVGTMIKITDNYYMLAQDVDKAKQLLKDHFSDQDTLSIGEWRDILD HHHHHHHHHHHHHHHHCCCEEEECCEEEEHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHH TTRKYALPLLEYFDRIKLTRRQEDVRVYLGNNE HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8893853 [H]