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The map label for this gene is rnfE [H]

Identifier: 188585711

GI number: 188585711

Start: 1143847

End: 1144464

Strand: Direct

Name: rnfE [H]

Synonym: Nther_1084

Alternate gene names: 188585711

Gene position: 1143847-1144464 (Clockwise)

Preceding gene: 188585710

Following gene: 188585712

Centisome position: 36.13

GC content: 40.29

Gene sequence:

>618_bases
ATGAATTTTAGTCAGGCATTAGCCCAAGGGATATTAAGAGAAAATGGTTTGTACCGGCAATTGCTGGGGCTTTGTCCTGC
CCTGGCAGTTACCGGTACTGCTATTAACAGCTTAGGCATGGGAGTTGCCACTTTATCAGTTTTAGTGGCTTCAAATATTG
TTATATCTCTTATACGTAATCTGATTCCTCAGAAAATTAGAATTCCAGCTTATATAGTTATCATAGCCACTTTTGTAACC
CTGGTTGATATGGTCTTAGAAGCTTTTAATCCAGAGCTCCATTCTGCTTTAGGTATTTTTATCCCCTTGATTGTAACTAA
TTGTTTGATATTAGGAAGGGCTGAAGCCTTTGCTTCCCGAGAAGAAATTGTACCTTCCATTGGCGATGGACTCGGTATGG
GGCTTGGCTTTACCCTGGCACTTCTTTCTGTAGGTGTAGTGCGAGAACTTTTAGGAATGGGAAGTATTTTTGGGTGGCCG
GTGATGGATCAGTTATTTGGATTGTTTGGGGCAGAATTTCAACCAGTTTTGATATTTGTCCAACCTGCTGGAGCTTTTTT
TGCCCTGGGGCTATTATTGGCAGTAATGAATTTGTATTTTAGAAAAATTTCTGTGTAA

Upstream 100 bases:

>100_bases
GAACAGTCTACTGATGTAGATACTGTATCTGGAGCTACCCAATCAAGTGTTGGAATTATTAACGCAGTAGAGGAAGCTTT
AGAACAGGAGAGTGAATAGA

Downstream 100 bases:

>100_bases
GTATGTAAACTATTTTTTTACTTGATCTTTACGAAAACACAATAAATAAAATAAACATTGGGAAAGGGGCTTATTATGAT
AGAGGATCTACTGGTTATCT

Product: electron transport complex, RnfABCDGE type, E subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MNFSQALAQGILRENGLYRQLLGLCPALAVTGTAINSLGMGVATLSVLVASNIVISLIRNLIPQKIRIPAYIVIIATFVT
LVDMVLEAFNPELHSALGIFIPLIVTNCLILGRAEAFASREEIVPSIGDGLGMGLGFTLALLSVGVVRELLGMGSIFGWP
VMDQLFGLFGAEFQPVLIFVQPAGAFFALGLLLAVMNLYFRKISV

Sequences:

>Translated_205_residues
MNFSQALAQGILRENGLYRQLLGLCPALAVTGTAINSLGMGVATLSVLVASNIVISLIRNLIPQKIRIPAYIVIIATFVT
LVDMVLEAFNPELHSALGIFIPLIVTNCLILGRAEAFASREEIVPSIGDGLGMGLGFTLALLSVGVVRELLGMGSIFGWP
VMDQLFGLFGAEFQPVLIFVQPAGAFFALGLLLAVMNLYFRKISV
>Mature_205_residues
MNFSQALAQGILRENGLYRQLLGLCPALAVTGTAINSLGMGVATLSVLVASNIVISLIRNLIPQKIRIPAYIVIIATFVT
LVDMVLEAFNPELHSALGIFIPLIVTNCLILGRAEAFASREEIVPSIGDGLGMGLGFTLALLSVGVVRELLGMGSIFGWP
VMDQLFGLFGAEFQPVLIFVQPAGAFFALGLLLAVMNLYFRKISV

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4660

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfE

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787919, Length=199, Percent_Identity=44.2211055276382, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1787914, Length=152, Percent_Identity=33.5526315789474, Blast_Score=73, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR010968 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 21864; Mature: 21864

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFSQALAQGILRENGLYRQLLGLCPALAVTGTAINSLGMGVATLSVLVASNIVISLIRN
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIPQKIRIPAYIVIIATFVTLVDMVLEAFNPELHSALGIFIPLIVTNCLILGRAEAFASR
HCCHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEIVPSIGDGLGMGLGFTLALLSVGVVRELLGMGSIFGWPVMDQLFGLFGAEFQPVLIFV
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEEE
QPAGAFFALGLLLAVMNLYFRKISV
ECHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNFSQALAQGILRENGLYRQLLGLCPALAVTGTAINSLGMGVATLSVLVASNIVISLIRN
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIPQKIRIPAYIVIIATFVTLVDMVLEAFNPELHSALGIFIPLIVTNCLILGRAEAFASR
HCCHHHCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEIVPSIGDGLGMGLGFTLALLSVGVVRELLGMGSIFGWPVMDQLFGLFGAEFQPVLIFV
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEEE
QPAGAFFALGLLLAVMNLYFRKISV
ECHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA