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The map label for this gene is rnfA [H]

Identifier: 188585712

GI number: 188585712

Start: 1144540

End: 1145118

Strand: Direct

Name: rnfA [H]

Synonym: Nther_1085

Alternate gene names: 188585712

Gene position: 1144540-1145118 (Clockwise)

Preceding gene: 188585711

Following gene: 188585713

Centisome position: 36.16

GC content: 35.41

Gene sequence:

>579_bases
ATGATAGAGGATCTACTGGTTATCTTTTTGGGAGCAGTTCTTGTTAATAATTTTGTATTAATAAGATTTTTAGGAATCTG
TCCTTTTCTGGGAGTTTCGAAAAAAGTAGAAACAGCTTTGGGAATGGGTTTTGCTGTTACTTTTGTTATGACATTGTCAT
CTATAATTACATGGTTTATAGCTGAATTTATCCTCATCCCCCTGGAAGCTGAATACCTAGAGTATGTAGCTTATATTCTG
GTGATTGCTTCTCTGGTACAGTTTATTGAAATGTTACTCGAAAAAGTTAGTCCGAGCTTGTATAAAGCTTTGGGAATATT
TCTGCCTTTGATTACTACTAATTGTGCTATTTTAGGTTTAGTATTGATTAATATACTTGAAGATTATAATTTGTTGGAAG
CTACTGTCCATGGAATTGGTGCGGGAGTTGGGTTTATTTTGGCTTTAATTTTGATGGCCGGTATCAGAGAGCGCTTGGAA
CTTGTTAAAATGCATGAAGTTTTTAAGGGTGCTTCAATCGCTTTTATTACCGCGGGAATTCTTGCCCTGGCTTTTTCAGG
ATTTTTAGGCATAATCTAG

Upstream 100 bases:

>100_bases
GTATTTTAGAAAAATTTCTGTGTAAGTATGTAAACTATTTTTTTACTTGATCTTTACGAAAACACAATAAATAAAATAAA
CATTGGGAAAGGGGCTTATT

Downstream 100 bases:

>100_bases
TGAATAATTTTAAGGATGTGATACAAAAGGAGTGTAATTAGATGATTGAAGCTGTTTTAAGTTTAGGAGCTATTGCGTTT
ATTTTTGGATCTGTATTAGC

Product: electron transport complex, RnfABCDGE type, A subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MIEDLLVIFLGAVLVNNFVLIRFLGICPFLGVSKKVETALGMGFAVTFVMTLSSIITWFIAEFILIPLEAEYLEYVAYIL
VIASLVQFIEMLLEKVSPSLYKALGIFLPLITTNCAILGLVLINILEDYNLLEATVHGIGAGVGFILALILMAGIRERLE
LVKMHEVFKGASIAFITAGILALAFSGFLGII

Sequences:

>Translated_192_residues
MIEDLLVIFLGAVLVNNFVLIRFLGICPFLGVSKKVETALGMGFAVTFVMTLSSIITWFIAEFILIPLEAEYLEYVAYIL
VIASLVQFIEMLLEKVSPSLYKALGIFLPLITTNCAILGLVLINILEDYNLLEATVHGIGAGVGFILALILMAGIRERLE
LVKMHEVFKGASIAFITAGILALAFSGFLGII
>Mature_192_residues
MIEDLLVIFLGAVLVNNFVLIRFLGICPFLGVSKKVETALGMGFAVTFVMTLSSIITWFIAEFILIPLEAEYLEYVAYIL
VIASLVQFIEMLLEKVSPSLYKALGIFLPLITTNCAILGLVLINILEDYNLLEATVHGIGAGVGFILALILMAGIRERLE
LVKMHEVFKGASIAFITAGILALAFSGFLGII

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=191, Percent_Identity=57.5916230366492, Blast_Score=224, Evalue=2e-60,
Organism=Escherichia coli, GI1787919, Length=162, Percent_Identity=33.9506172839506, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 20902; Mature: 20902

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEDLLVIFLGAVLVNNFVLIRFLGICPFLGVSKKVETALGMGFAVTFVMTLSSIITWFI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEFILIPLEAEYLEYVAYILVIASLVQFIEMLLEKVSPSLYKALGIFLPLITTNCAILGL
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
VLINILEDYNLLEATVHGIGAGVGFILALILMAGIRERLELVKMHEVFKGASIAFITAGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LALAFSGFLGII
HHHHHHHHHHCC
>Mature Secondary Structure
MIEDLLVIFLGAVLVNNFVLIRFLGICPFLGVSKKVETALGMGFAVTFVMTLSSIITWFI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEFILIPLEAEYLEYVAYILVIASLVQFIEMLLEKVSPSLYKALGIFLPLITTNCAILGL
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
VLINILEDYNLLEATVHGIGAGVGFILALILMAGIRERLELVKMHEVFKGASIAFITAGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LALAFSGFLGII
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA