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The map label for this gene is rnfD [H]

Identifier: 188585709

GI number: 188585709

Start: 1141795

End: 1142742

Strand: Direct

Name: rnfD [H]

Synonym: Nther_1082

Alternate gene names: 188585709

Gene position: 1141795-1142742 (Clockwise)

Preceding gene: 188585708

Following gene: 188585710

Centisome position: 36.07

GC content: 40.19

Gene sequence:

>948_bases
ATGAAAGAGAAACTTGTGGTGTCTTCTTCACCTCATCTCAGGTCACCAGAAACTATAGATAGTATTATGAGAGATGTGTT
AATAGCTTTAATACCACCTTTTATTGTAAGCATCTGGTTATTTGGTTGGACATCTATCATTGTTGTTGCAGTGGCAACTG
CAGTATCTATGATAACTGAATCTCTTATAGTCCATAAATCATTGGCTCCAAGGAAACTTAAAGGAGATTTAAGTGCTGCA
GTCACAGGGGTTATTTTTGGACTGAGTTTGCCCCCTGGGACGCCCTGGTGGGTAGTAGCTTCAGGCGCTTTTGTTGCTAT
TTTCATTGCAAAACAGATATTTGGAGGGATTGGATATAATATTTTCAATCCCGCTTTAGTAGGTAGGGCTTTTGTAGTAG
TAGCTTGGCCCTCTTATTTAACTCATTGGACAGAACCCTTTGAACCTGTTGATGCTGCTTCTAGGGCCACCCCATTGGCA
TTCCCGGGTATGACAGAGGGTTCACCCTTTGAAATAGTTCCCTTTACTGACTTGTTTGTAGGAACCATTGCTGGTTCACT
TGGTGAAACCTCGGCTTTAGCAATTACAATTGGTGGAATATTTCTACTAATAAGAGGACATATTGATTTCAGAGTGCCTC
TCGGTTTTTTGGGTGCCTTGGCTTTAGTTGTTTCTATTGCAGGCGAAAATGCATTGTTCCATTTAGTTAGCGGTAGTGCT
TTTTTTGGAGCTATTTTTATAGCCACTTGCATGGTCACCTCTCCTTATACAAAAACTGGAAAACTAATTTTTGGGATAGG
TTGTGGTGCCATAACTGCCATTTTAAGGATGTACGCAGCAATTCCCGCTGGAGTAACCTATGCGGTGCTATTGATGAATG
CATTAGTACCCTTTATTAATGTTTATACTAAACCTAGAGTCTATGGGGAGGTTAATAATAAAAAATGA

Upstream 100 bases:

>100_bases
AGAATGGCCAAGGCCGATATCATGAAAAAGCGAGAAAAAGAAGGATGACGATTGATAAGACGGATTAAAAAGACTAGTTT
TTGATAGCAGGAGGTATAAG

Downstream 100 bases:

>100_bases
AAGCATCCAACGTACTTCGTCTATCAATGATTTTAACTTTAGTTACACTTTTGGCAGCTACTGTCTTGGGTTTCTCATTT
GTATATACAGAGCCTCTAAT

Product: electron transport complex, RnfABCDGE type, D subunit

Products: NA

Alternate protein names: Nitrogen fixation protein rnfD [H]

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MKEKLVVSSSPHLRSPETIDSIMRDVLIALIPPFIVSIWLFGWTSIIVVAVATAVSMITESLIVHKSLAPRKLKGDLSAA
VTGVIFGLSLPPGTPWWVVASGAFVAIFIAKQIFGGIGYNIFNPALVGRAFVVVAWPSYLTHWTEPFEPVDAASRATPLA
FPGMTEGSPFEIVPFTDLFVGTIAGSLGETSALAITIGGIFLLIRGHIDFRVPLGFLGALALVVSIAGENALFHLVSGSA
FFGAIFIATCMVTSPYTKTGKLIFGIGCGAITAILRMYAAIPAGVTYAVLLMNALVPFINVYTKPRVYGEVNNKK

Sequences:

>Translated_315_residues
MKEKLVVSSSPHLRSPETIDSIMRDVLIALIPPFIVSIWLFGWTSIIVVAVATAVSMITESLIVHKSLAPRKLKGDLSAA
VTGVIFGLSLPPGTPWWVVASGAFVAIFIAKQIFGGIGYNIFNPALVGRAFVVVAWPSYLTHWTEPFEPVDAASRATPLA
FPGMTEGSPFEIVPFTDLFVGTIAGSLGETSALAITIGGIFLLIRGHIDFRVPLGFLGALALVVSIAGENALFHLVSGSA
FFGAIFIATCMVTSPYTKTGKLIFGIGCGAITAILRMYAAIPAGVTYAVLLMNALVPFINVYTKPRVYGEVNNKK
>Mature_315_residues
MKEKLVVSSSPHLRSPETIDSIMRDVLIALIPPFIVSIWLFGWTSIIVVAVATAVSMITESLIVHKSLAPRKLKGDLSAA
VTGVIFGLSLPPGTPWWVVASGAFVAIFIAKQIFGGIGYNIFNPALVGRAFVVVAWPSYLTHWTEPFEPVDAASRATPLA
FPGMTEGSPFEIVPFTDLFVGTIAGSLGETSALAITIGGIFLLIRGHIDFRVPLGFLGALALVVSIAGENALFHLVSGSA
FFGAIFIATCMVTSPYTKTGKLIFGIGCGAITAILRMYAAIPAGVTYAVLLMNALVPFINVYTKPRVYGEVNNKK

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase [H]

COG id: COG4658

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=346, Percent_Identity=32.6589595375723, Blast_Score=178, Evalue=5e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011303
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 33459; Mature: 33459

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKLVVSSSPHLRSPETIDSIMRDVLIALIPPFIVSIWLFGWTSIIVVAVATAVSMITE
CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIVHKSLAPRKLKGDLSAAVTGVIFGLSLPPGTPWWVVASGAFVAIFIAKQIFGGIGYN
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCHH
IFNPALVGRAFVVVAWPSYLTHWTEPFEPVDAASRATPLAFPGMTEGSPFEIVPFTDLFV
HHCHHHHHCEEEEEECHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEHHHHHH
GTIAGSLGETSALAITIGGIFLLIRGHIDFRVPLGFLGALALVVSIAGENALFHLVSGSA
HHHHCCCCCCCEEEEEHHHEEEHEECCCEEECHHHHHHHHHHHHHHCCCCEEEEEECCCH
FFGAIFIATCMVTSPYTKTGKLIFGIGCGAITAILRMYAAIPAGVTYAVLLMNALVPFIN
HHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VYTKPRVYGEVNNKK
HHCCCEEEECCCCCC
>Mature Secondary Structure
MKEKLVVSSSPHLRSPETIDSIMRDVLIALIPPFIVSIWLFGWTSIIVVAVATAVSMITE
CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIVHKSLAPRKLKGDLSAAVTGVIFGLSLPPGTPWWVVASGAFVAIFIAKQIFGGIGYN
HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHCCCHH
IFNPALVGRAFVVVAWPSYLTHWTEPFEPVDAASRATPLAFPGMTEGSPFEIVPFTDLFV
HHCHHHHHCEEEEEECHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEEHHHHHH
GTIAGSLGETSALAITIGGIFLLIRGHIDFRVPLGFLGALALVVSIAGENALFHLVSGSA
HHHHCCCCCCCEEEEEHHHEEEHEECCCEEECHHHHHHHHHHHHHHCCCCEEEEEECCCH
FFGAIFIATCMVTSPYTKTGKLIFGIGCGAITAILRMYAAIPAGVTYAVLLMNALVPFIN
HHHHHHHHHHHHCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VYTKPRVYGEVNNKK
HHCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA