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The map label for this gene is rnfC [H]

Identifier: 188585708

GI number: 188585708

Start: 1140417

End: 1141742

Strand: Direct

Name: rnfC [H]

Synonym: Nther_1081

Alternate gene names: 188585708

Gene position: 1140417-1141742 (Clockwise)

Preceding gene: 188585705

Following gene: 188585709

Centisome position: 36.03

GC content: 38.76

Gene sequence:

>1326_bases
ATGGCCCAGTTAACCTTTAGGGGAGGTGTGGAACCTGGTGACTATAAAAATACCGCAGACCACCCTATAGAACAGATGGC
ATTACCCGACAAAGTTTATATTCCCCTAGAACAACATATCGGAGCACCTTGTGAACCTATTGTTGATGTAGGAGATAAGG
TTAAAACTGGTCAAAAAATTGCAGAAAGTGAAGCTCCGGTCTCGGCACCTATTCATGCAAGTATTTCGGGGGAAGTTATA
GATATTACTGAATACACCCATCCAATTGGAGAAAAAGCCAATACAATAATAATTGAAAATGACGGAAAAGATGAATTGGA
TTACGAAGAAAGCGAGGGATTAGATTCCCCCGATAATATTACAGCTGATGAAATTAAAGAGAAAGTGAATGCAGCTGGAA
TTATTGGTATGGGCGGAGCTGCTTTCCCTACTCATATCAAAATCTCTCCAGATAAAGAAAAACCTATTGATACAGTTATC
TTAAACGGGGCTGAATGTGAACCTTATTTAACAACTGATTACAGAATGATGTTGGAAGCAGAAGATTATGTGTTGTTTGG
CTTAAGAGCTATTATGAAAGCAGTTAACTGTGAAAATGGAGTTATTGCTATTGAAAATAATAAGCCCCAAGCTATCGAGA
AAATGCAAAATATTGTAGCAGATGACGACAGACTACAGGTGATGATATTTGAATCAAAGTATCCCCAGGGGGCAGAAAAA
CAGTTGATAAAAACGGTTACAGGAAGAGAAGTGCCTTCTGGAGGATTGCCTATGGATGTAGGATGTATCGTAAATAATGT
AGGAACAGCTGTAGCTATAGCTGAGGCTATTAAATTAAATAAACCTTCTTACGAAAGAGTTATGACAGTAACAGGTCCAG
GAATCAACCGACCAGGTAATTTTTTAGTAAGAATAGGGACACTAGCATCTCATATTATTTCTGAATGTGGTGGAGCAAAG
GAAAATACAAAAAAAGTTATCATGGGCGGTCCTATGATGGGGCTGAGCCAACCGACAGTTGAGTTTCCAGTTATTAAGGG
AACTTCAGGGATTTTATTATTAACAGGATCAGAGGTTAAAGTTTTTGAAGAAAAACCCTGCATTAATTGTGGCAGATGTG
TAGACGATTGTCCTGCCTATTTACTTCCCAATGTAATAGCCCATTATATGGAAAATGGCAGGGTAAATGAGTCAGAAGAC
TATAACGCCATGGATTGCATAGAATGTGGTTGCTGTACTTATATATGCCCTGCTAACAGACCACTGGTGCATTATATTAG
AATGGCCAAGGCCGATATCATGAAAAAGCGAGAAAAAGAAGGATGA

Upstream 100 bases:

>100_bases
GAATTTAAATGGTATAAAATAACGCTCCCAGTAAAAATTAAAAACAAGAGCATATGTAGTTCAAAATTTAAGTAACAAGT
TATAGCGAAGGAGGAGTATA

Downstream 100 bases:

>100_bases
CGATTGATAAGACGGATTAAAAAGACTAGTTTTTGATAGCAGGAGGTATAAGATGAAAGAGAAACTTGTGGTGTCTTCTT
CACCTCATCTCAGGTCACCA

Product: electron transport complex, RnfABCDGE type, C subunit

Products: NA

Alternate protein names: Nitrogen fixation protein rnfC [H]

Number of amino acids: Translated: 441; Mature: 440

Protein sequence:

>441_residues
MAQLTFRGGVEPGDYKNTADHPIEQMALPDKVYIPLEQHIGAPCEPIVDVGDKVKTGQKIAESEAPVSAPIHASISGEVI
DITEYTHPIGEKANTIIIENDGKDELDYEESEGLDSPDNITADEIKEKVNAAGIIGMGGAAFPTHIKISPDKEKPIDTVI
LNGAECEPYLTTDYRMMLEAEDYVLFGLRAIMKAVNCENGVIAIENNKPQAIEKMQNIVADDDRLQVMIFESKYPQGAEK
QLIKTVTGREVPSGGLPMDVGCIVNNVGTAVAIAEAIKLNKPSYERVMTVTGPGINRPGNFLVRIGTLASHIISECGGAK
ENTKKVIMGGPMMGLSQPTVEFPVIKGTSGILLLTGSEVKVFEEKPCINCGRCVDDCPAYLLPNVIAHYMENGRVNESED
YNAMDCIECGCCTYICPANRPLVHYIRMAKADIMKKREKEG

Sequences:

>Translated_441_residues
MAQLTFRGGVEPGDYKNTADHPIEQMALPDKVYIPLEQHIGAPCEPIVDVGDKVKTGQKIAESEAPVSAPIHASISGEVI
DITEYTHPIGEKANTIIIENDGKDELDYEESEGLDSPDNITADEIKEKVNAAGIIGMGGAAFPTHIKISPDKEKPIDTVI
LNGAECEPYLTTDYRMMLEAEDYVLFGLRAIMKAVNCENGVIAIENNKPQAIEKMQNIVADDDRLQVMIFESKYPQGAEK
QLIKTVTGREVPSGGLPMDVGCIVNNVGTAVAIAEAIKLNKPSYERVMTVTGPGINRPGNFLVRIGTLASHIISECGGAK
ENTKKVIMGGPMMGLSQPTVEFPVIKGTSGILLLTGSEVKVFEEKPCINCGRCVDDCPAYLLPNVIAHYMENGRVNESED
YNAMDCIECGCCTYICPANRPLVHYIRMAKADIMKKREKEG
>Mature_440_residues
AQLTFRGGVEPGDYKNTADHPIEQMALPDKVYIPLEQHIGAPCEPIVDVGDKVKTGQKIAESEAPVSAPIHASISGEVID
ITEYTHPIGEKANTIIIENDGKDELDYEESEGLDSPDNITADEIKEKVNAAGIIGMGGAAFPTHIKISPDKEKPIDTVIL
NGAECEPYLTTDYRMMLEAEDYVLFGLRAIMKAVNCENGVIAIENNKPQAIEKMQNIVADDDRLQVMIFESKYPQGAEKQ
LIKTVTGREVPSGGLPMDVGCIVNNVGTAVAIAEAIKLNKPSYERVMTVTGPGINRPGNFLVRIGTLASHIISECGGAKE
NTKKVIMGGPMMGLSQPTVEFPVIKGTSGILLLTGSEVKVFEEKPCINCGRCVDDCPAYLLPNVIAHYMENGRVNESEDY
NAMDCIECGCCTYICPANRPLVHYIRMAKADIMKKREKEG

Specific function: Required for nitrogen fixation. May be part of a membrane complex functioning as an intermediate in the electron transport to nitrogenase. Stabilizes rnfB [H]

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787916, Length=439, Percent_Identity=38.2687927107062, Blast_Score=320, Evalue=1e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554 [H]

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]

EC number: NA

Molecular weight: Translated: 47887; Mature: 47755

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQLTFRGGVEPGDYKNTADHPIEQMALPDKVYIPLEQHIGAPCEPIVDVGDKVKTGQKI
CCEEEECCCCCCCCCCCCCCCCHHHHCCCCEEEEEHHHHCCCCCCHHHCCCCCHHCCHHH
AESEAPVSAPIHASISGEVIDITEYTHPIGEKANTIIIENDGKDELDYEESEGLDSPDNI
HHCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCHHCCCCCCCCC
TADEIKEKVNAAGIIGMGGAAFPTHIKISPDKEKPIDTVILNGAECEPYLTTDYRMMLEA
CHHHHHHHHCCCCEEECCCCCCCEEEEECCCCCCCCCEEEECCCCCCCEEECCEEEEEEC
EDYVLFGLRAIMKAVNCENGVIAIENNKPQAIEKMQNIVADDDRLQVMIFESKYPQGAEK
CCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCHHH
QLIKTVTGREVPSGGLPMDVGCIVNNVGTAVAIAEAIKLNKPSYERVMTVTGPGINRPGN
HHHHHHCCCCCCCCCCCEEHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
FLVRIGTLASHIISECGGAKENTKKVIMGGPMMGLSQPTVEFPVIKGTSGILLLTGSEVK
EEEEHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCEE
VFEEKPCINCGRCVDDCPAYLLPNVIAHYMENGRVNESEDYNAMDCIECGCCTYICPANR
EECCCCCCCCCCCHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCEEEECCCCC
PLVHYIRMAKADIMKKREKEG
HHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AQLTFRGGVEPGDYKNTADHPIEQMALPDKVYIPLEQHIGAPCEPIVDVGDKVKTGQKI
CEEEECCCCCCCCCCCCCCCCHHHHCCCCEEEEEHHHHCCCCCCHHHCCCCCHHCCHHH
AESEAPVSAPIHASISGEVIDITEYTHPIGEKANTIIIENDGKDELDYEESEGLDSPDNI
HHCCCCCCCCEEECCCCCEEEEECCCCCCCCCCCEEEEECCCCCCCCCCHHCCCCCCCCC
TADEIKEKVNAAGIIGMGGAAFPTHIKISPDKEKPIDTVILNGAECEPYLTTDYRMMLEA
CHHHHHHHHCCCCEEECCCCCCCEEEEECCCCCCCCCEEEECCCCCCCEEECCEEEEEEC
EDYVLFGLRAIMKAVNCENGVIAIENNKPQAIEKMQNIVADDDRLQVMIFESKYPQGAEK
CCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCHHH
QLIKTVTGREVPSGGLPMDVGCIVNNVGTAVAIAEAIKLNKPSYERVMTVTGPGINRPGN
HHHHHHCCCCCCCCCCCEEHHHHHHCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC
FLVRIGTLASHIISECGGAKENTKKVIMGGPMMGLSQPTVEFPVIKGTSGILLLTGSEVK
EEEEHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCEEEEEEECCCCEEEEECCCEE
VFEEKPCINCGRCVDDCPAYLLPNVIAHYMENGRVNESEDYNAMDCIECGCCTYICPANR
EECCCCCCCCCCCHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCEEEECCCCC
PLVHYIRMAKADIMKKREKEG
HHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8264535; 9492268; 9154934 [H]