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The map label for this gene is pepF [H]

Identifier: 188584772

GI number: 188584772

Start: 154201

End: 155982

Strand: Direct

Name: pepF [H]

Synonym: Nther_0130

Alternate gene names: 188584772

Gene position: 154201-155982 (Clockwise)

Preceding gene: 188584769

Following gene: 188584776

Centisome position: 4.87

GC content: 35.3

Gene sequence:

>1782_bases
ATGAATAGGCTAGATGATCATGACAAATTAAGTTTAACCTGGGATTTAAATAAAATTTTCTCAGGAGGAAGCGACTCTTA
CCAATTAAAAGAAATGATGTCTGAATTAGAACAGGAACTAAAAGATTTAGCCAATAAATCTTCAGAATTAATAGTTGATA
CCAAATCAGTTTCCAATCTAGTACAATCATGTCAGGATACTCGAGATAAATTGAGAGAAGTTGGAGCTTTTATTAGATGT
TTGGTTAGTCAAGACCAAACAGATAAAGAAGCCCAGCGACTAGAAGCATATCTTGGCCAGCTTGAGGCCAAATTAGAGGC
AGTTATGATTGATTTAGAATCCATTGTACAAGAGTTTTGGGAAGAAGATTGGCAAAAACTTATAAACTCTCAAGAAATTA
ATCCTATTAAATTCTTTATGGAAGAACTTCGAGCTAAAGGTAAGAATAAAATGGCACCAGATAAAGAAAAATTAGCAGCT
GACCTGGCTGTAGACGGTTACCATGGATGGGGACAATTATATCATACTATAATAGGCGATATAGAAATTCAATATCAAGA
CCAAATAATTTCTGTAGGCCAAGCCCATAATTTATTGTCTGACCCTAATCAAAATGTACGATTTGAAATAGGGCAAAAAA
TAGAGGAAGCTTTTCAAAATAAAGAACACTTAATTGCCAATACTTTAAATCACCTTGCCGGTTATCGCTTAAATTTGTAT
AAACACCGTCATTGGGATGATTTTTTGTATGAAGCTATGACTATTAATAGAGTTTCCCAAAAAACCATTGAAACTATGTG
GGATACTATTTCCAAATACAAAGAAACTTTCACTGATTATTATGAGAATAAAAAGCAGTTTTTAAATTTGGAAAAGTTCG
GCTGGTTTGATAGAAATGCCCCTCTTTCTAGTGATGACTCTCAGATAGAGTTCGGGGAAGGTGCTCAATTTATTATTGAT
CAATTTGAAAAAGTGAGCCAGGAAATGGCTGATTTTGCAGAAATGGCTTTAATTAACAGATGGGTTGAAGCAGAAAATCG
TGCAAATAAGCGTCCGGGAGGCTTCTGTGCTACTTTCCCTATGAGTGGTGAAAGCAGAATATTTATGACTTATTCAGGTA
CTTCTAGAAATGTAGCAACCTTAGCCCATGAACTAGGCCATGCTTATCATCAATGGACATTAAAGGAATTACCTTCATTT
TCTGCCAAATATCCCATGACCCTGGCCGAAACTGCATCTACTTTTGCTGAACAGGTGGTTTCAGATGCTGCAATAGAGGC
TAGCCAGAGTAAAGAAGAAATGATAACTTTGTTAGATGATAAAATAAGCAGAAGTTGTGCTTTTTTCATGGATCTTCATA
GCAGATTTTTATTTGAAACTTCTTTTTATCGGGAAAGGGAAGCTGGCCCGGTAGATGTAGATAGGCTAAATCAATTAATG
GTTGAAGCTCAAAGGAAGGCATACTTGAACTCCCTTGACCACTGGCATCCCAGGTTTTGGGCTACTAAACTACACTTTTA
TTTGACCAAGGTTCCATTCTATAATTTTCCTTATACATTTGGTTATTTATTCAGTATGGGAATTTATGCTCTATACAAGA
ATTCGCCTGAAGATTTTCCGGAAATTTATAAGAAATTGTTAAAAGATACGGGTAGTATGACAGTGGAAGAGCTAGCTTGG
AAACATATGGGTACTGATCTGACTAAACCAGATTTTTGGGAAGAAGCAGTTGCTAATTGTATTGCTGATGTTGACAAATT
AAATTCAATTTTAAAAGATTGA

Upstream 100 bases:

>100_bases
TAAGATTAAATTTTAACACCAACTTATGAAGGTTTGCAGCTATAATTATAGAATTTAAACAATATTATGAATTATATACT
TATTCCAGGAGGTATAAGCT

Downstream 100 bases:

>100_bases
TAAATTAATCTTTTAAATGTCCATCAAATAAAAGTGGGGGTCCATTAAAATGGACCCCCACTTTTTATAATTGTTGATTT
TTTATGGAACAAGTGCAATT

Product: Oligopeptidase F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 593; Mature: 593

Protein sequence:

>593_residues
MNRLDDHDKLSLTWDLNKIFSGGSDSYQLKEMMSELEQELKDLANKSSELIVDTKSVSNLVQSCQDTRDKLREVGAFIRC
LVSQDQTDKEAQRLEAYLGQLEAKLEAVMIDLESIVQEFWEEDWQKLINSQEINPIKFFMEELRAKGKNKMAPDKEKLAA
DLAVDGYHGWGQLYHTIIGDIEIQYQDQIISVGQAHNLLSDPNQNVRFEIGQKIEEAFQNKEHLIANTLNHLAGYRLNLY
KHRHWDDFLYEAMTINRVSQKTIETMWDTISKYKETFTDYYENKKQFLNLEKFGWFDRNAPLSSDDSQIEFGEGAQFIID
QFEKVSQEMADFAEMALINRWVEAENRANKRPGGFCATFPMSGESRIFMTYSGTSRNVATLAHELGHAYHQWTLKELPSF
SAKYPMTLAETASTFAEQVVSDAAIEASQSKEEMITLLDDKISRSCAFFMDLHSRFLFETSFYREREAGPVDVDRLNQLM
VEAQRKAYLNSLDHWHPRFWATKLHFYLTKVPFYNFPYTFGYLFSMGIYALYKNSPEDFPEIYKKLLKDTGSMTVEELAW
KHMGTDLTKPDFWEEAVANCIADVDKLNSILKD

Sequences:

>Translated_593_residues
MNRLDDHDKLSLTWDLNKIFSGGSDSYQLKEMMSELEQELKDLANKSSELIVDTKSVSNLVQSCQDTRDKLREVGAFIRC
LVSQDQTDKEAQRLEAYLGQLEAKLEAVMIDLESIVQEFWEEDWQKLINSQEINPIKFFMEELRAKGKNKMAPDKEKLAA
DLAVDGYHGWGQLYHTIIGDIEIQYQDQIISVGQAHNLLSDPNQNVRFEIGQKIEEAFQNKEHLIANTLNHLAGYRLNLY
KHRHWDDFLYEAMTINRVSQKTIETMWDTISKYKETFTDYYENKKQFLNLEKFGWFDRNAPLSSDDSQIEFGEGAQFIID
QFEKVSQEMADFAEMALINRWVEAENRANKRPGGFCATFPMSGESRIFMTYSGTSRNVATLAHELGHAYHQWTLKELPSF
SAKYPMTLAETASTFAEQVVSDAAIEASQSKEEMITLLDDKISRSCAFFMDLHSRFLFETSFYREREAGPVDVDRLNQLM
VEAQRKAYLNSLDHWHPRFWATKLHFYLTKVPFYNFPYTFGYLFSMGIYALYKNSPEDFPEIYKKLLKDTGSMTVEELAW
KHMGTDLTKPDFWEEAVANCIADVDKLNSILKD
>Mature_593_residues
MNRLDDHDKLSLTWDLNKIFSGGSDSYQLKEMMSELEQELKDLANKSSELIVDTKSVSNLVQSCQDTRDKLREVGAFIRC
LVSQDQTDKEAQRLEAYLGQLEAKLEAVMIDLESIVQEFWEEDWQKLINSQEINPIKFFMEELRAKGKNKMAPDKEKLAA
DLAVDGYHGWGQLYHTIIGDIEIQYQDQIISVGQAHNLLSDPNQNVRFEIGQKIEEAFQNKEHLIANTLNHLAGYRLNLY
KHRHWDDFLYEAMTINRVSQKTIETMWDTISKYKETFTDYYENKKQFLNLEKFGWFDRNAPLSSDDSQIEFGEGAQFIID
QFEKVSQEMADFAEMALINRWVEAENRANKRPGGFCATFPMSGESRIFMTYSGTSRNVATLAHELGHAYHQWTLKELPSF
SAKYPMTLAETASTFAEQVVSDAAIEASQSKEEMITLLDDKISRSCAFFMDLHSRFLFETSFYREREAGPVDVDRLNQLM
VEAQRKAYLNSLDHWHPRFWATKLHFYLTKVPFYNFPYTFGYLFSMGIYALYKNSPEDFPEIYKKLLKDTGSMTVEELAW
KHMGTDLTKPDFWEEAVANCIADVDKLNSILKD

Specific function: Unknown

COG id: COG1164

COG function: function code E; Oligoendopeptidase F

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M3B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001567
- InterPro:   IPR004438
- InterPro:   IPR013647 [H]

Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N [H]

EC number: NA

Molecular weight: Translated: 68867; Mature: 68867

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLDDHDKLSLTWDLNKIFSGGSDSYQLKEMMSELEQELKDLANKSSELIVDTKSVSNL
CCCCCCCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHH
VQSCQDTRDKLREVGAFIRCLVSQDQTDKEAQRLEAYLGQLEAKLEAVMIDLESIVQEFW
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEDWQKLINSQEINPIKFFMEELRAKGKNKMAPDKEKLAADLAVDGYHGWGQLYHTIIGD
HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCC
IEIQYQDQIISVGQAHNLLSDPNQNVRFEIGQKIEEAFQNKEHLIANTLNHLAGYRLNLY
CEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHH
KHRHWDDFLYEAMTINRVSQKTIETMWDTISKYKETFTDYYENKKQFLNLEKFGWFDRNA
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC
PLSSDDSQIEFGEGAQFIIDQFEKVSQEMADFAEMALINRWVEAENRANKRPGGFCATFP
CCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
MSGESRIFMTYSGTSRNVATLAHELGHAYHQWTLKELPSFSAKYPMTLAETASTFAEQVV
CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
SDAAIEASQSKEEMITLLDDKISRSCAFFMDLHSRFLFETSFYREREAGPVDVDRLNQLM
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
VEAQRKAYLNSLDHWHPRFWATKLHFYLTKVPFYNFPYTFGYLFSMGIYALYKNSPEDFP
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHH
EIYKKLLKDTGSMTVEELAWKHMGTDLTKPDFWEEAVANCIADVDKLNSILKD
HHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNRLDDHDKLSLTWDLNKIFSGGSDSYQLKEMMSELEQELKDLANKSSELIVDTKSVSNL
CCCCCCCCCEEEEEEHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHH
VQSCQDTRDKLREVGAFIRCLVSQDQTDKEAQRLEAYLGQLEAKLEAVMIDLESIVQEFW
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EEDWQKLINSQEINPIKFFMEELRAKGKNKMAPDKEKLAADLAVDGYHGWGQLYHTIIGD
HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCC
IEIQYQDQIISVGQAHNLLSDPNQNVRFEIGQKIEEAFQNKEHLIANTLNHLAGYRLNLY
CEEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHH
KHRHWDDFLYEAMTINRVSQKTIETMWDTISKYKETFTDYYENKKQFLNLEKFGWFDRNA
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCC
PLSSDDSQIEFGEGAQFIIDQFEKVSQEMADFAEMALINRWVEAENRANKRPGGFCATFP
CCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC
MSGESRIFMTYSGTSRNVATLAHELGHAYHQWTLKELPSFSAKYPMTLAETASTFAEQVV
CCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
SDAAIEASQSKEEMITLLDDKISRSCAFFMDLHSRFLFETSFYREREAGPVDVDRLNQLM
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
VEAQRKAYLNSLDHWHPRFWATKLHFYLTKVPFYNFPYTFGYLFSMGIYALYKNSPEDFP
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHH
EIYKKLLKDTGSMTVEELAWKHMGTDLTKPDFWEEAVANCIADVDKLNSILKD
HHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11353084 [H]