| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
Click here to switch to the map view.
The map label for this gene is omp85 [H]
Identifier: 188527496
GI number: 188527496
Start: 687246
End: 689891
Strand: Reverse
Name: omp85 [H]
Synonym: HPSH_03580
Alternate gene names: 188527496
Gene position: 689891-687246 (Counterclockwise)
Preceding gene: 188527497
Following gene: 188527495
Centisome position: 42.89
GC content: 42.74
Gene sequence:
>2646_bases TTGACTTCTCCAAAAGAAGCCTCTCAAGAATCTCAAAAAAATGAGGCTCAAAGAAATGAAGCTCAAAAAGAAACCTCTCA ATCAAATCAAACGCCTAAAGAAATGAAAGTCAAGTCCGTTTCTTATGTTGGGCTTTCTTACATGTCTGACATGCTCGCTA ATGAAATTGTAAAAATTCGTGTGGGCGATATTGTGGATTCTAAAAAAATAGACACCGCTGTTTTGGCTTTATTTAATCAA GGGTATTTTAAAGATGTTTATGCCACTTTTGAAGGCGGCATATTAGAGTTTCATTTTGATGAAAAAGCCAGAATTGCCGG GGTAGAAATCAAGGGTTATGGGACTGAAAAGGAAAAAGACGGCTTAAAATCCCAAATGGGGATCAAAAAGGGCGACACCT TTGATGAGCAAAAATTAGAGCATGCTAAAACGGCTTTAAAATCCGCTTTAGAGGGGCAGGGCTATTATGGGAGCGTGGTG GAGGTGCGCACCCAAAAGGTCAGTGAGGGCGCGTTATTAATCGTGTTTGATGTGAATAGGGGGGATAGCATTTATATCAA ACAATCCATTTATGAGGGAAGCGCGAAATTAAAACGCCGCATGATTGAATCTTTGAGCGCGAACAAGCAACGAGATTTCA TGGGCTGGATGTGGGGCTTGAATGATGGGAAATTGCGTTTAGATCAATTAGAATACGATTCTATGCGTATCCAAGATGTG TATATGCGTAGGGGTTACTTAGACGCTCATATTTCTTCGCCTTTTTTGAAAACGGATTTTTCTACCCATGACGCTAAGCT TCATTATAAAGTCAAAGAAGGGATCCAATACAGGATTTCAGACATTTTAATAGAGATTGACAACCCGGTAGTCCCCTTAA AAACCTTAGAAAAAGCGCTTAAAGTTAAAAGAAAAGATGTCTTTAATATTGAGCATTTAAGAGCGGATGCACAAATTTTA AAAACCGAAATTGCCGATAAGGGTTATGCGTTTGCGGTGGTGAAGCCAGACTTGGATAAAGATGAAAAAAACGGACTTGT GAAAGTCATTTATCGTATTGAAGTGGGCGATATGGTGTATATCAATGATGTCATCATTTCAGGGAACCAGCGTACAAGCG ATAGGATCATCAGAAGGGAGTTATTGTTAGGGCCTAAGGATAAATACAACTTGACTAAACTGAGAAATTCCGAAAATTCT TTAAGGCGTTTAGGGTTTTTCTCTAAAGTCAAAATTGAAGAAAAAAGGGTGAATAGTTCGCTTATGGATTTGTTAGTGAG CGTAGAAGAGGGGCGCACTGGGCAGTTGCAATTTGGGTTAGGCTATGGCTCTTATGGAGGACTTATGCTTAATGGGAGCG TGAGCGAAAGAAACCTTTTTGGCACAGGGCAAAGCATGAGCTTGTATGCTAACATCGCTACAGGGGGGGGCAGATCTTAT CCGGGCATGCCAAAAGGAGCGGGTCGTATGTTTGCTGGGAATTTGAGCCTGACTAATCCTAGGATTTTTGACAGCTGGTA TAGCTCTACGATCAATCTTTATGCGGATTATAGGATAAGCTACCAATACATCCAACAAGGTGGGGGCTTTGGGGTGAATG TCGGGCGCATGCTGGGTAACAGAACCCATGTGAGCTTAGGGTATAACTTGAATGTTACCAAACTCCTTGGTTTCAGCAGC CCTTTATACAACCGCTACTATTCCTCTGTTAATGAAGTGGTCGCTCCAAGGCAATGCTCTACCCCCGCATCGGTGATTAT CAATCGCTTATCAGGCGGTAAAACCCCCTTACAACCTGAAAATTGTTCTAGCCCTGGAGCGATCACCACTTCACCAGAAA TAAAAGGGATTTGGGATAGGGATTACCATACGCCTATCACCAGCTCTTTCACCCTTGATGTGAGCTATGACAACACCGAT GATTATTACTTCCCTAGAAATGGGGTTATCTTTAGCTCCTATGCGACGATGTCTGGCTTGCCAAGCTCTGGCACGCTCAA TTCGTGGAACGGGTTAGGCGGGAATGTCCGTAACACTAAAGTTTATGGTAAATTCGCCGCTTACCACCATTTGCAAAAAT ATTTATTGATAGATTTGATCGCTCGCTTTAAAACGCAAGGGGGCTATATCTTTAGGTATAACACCGATGATTACTTGCCC TTAAACTCCACCTTCTACATGGGGGGCGTAACCACGGTGAGAGGCTTTAGGAACGGATCGGTTACGCCTAAAGACGAATT TGGCTTGTGGCTTGGGGGCGATGGGATATTCACCGCTTCTACTGAATTAAGCTATGGGGTGTTAAAAGCGGCTAAAATGC GCTTAGCGTGGTTTTTTGACTTTGGTTTCTTGACCTTTAAAACCCCAACTAGGGGGAGCTTCTTCTATAACGCTCCCTTC ACAACAGCGAATTTTAAAGATTATGGCGTTATAGGGGCTGGGTTTGAAAGAGCGACTTGGAGGGCTTCTACAGGCTTGCA GATTGAATGGATTTCGCCCATGGGGCCTTTGGTGCTCATATTCCCTATAGCGTTTTTCAACCAATGGGGCGATGGCAATG GCAAGAAATGTAAAGGGCTATGCTTCAACCCTAACATGAACGATTACACGCAACACTTTGAATTTTCTATGGGAACAAGG TTTTAA
Upstream 100 bases:
>100_bases GGAAATCAGTATTAAAAAATTTATTCTATCTTCTCTTGTTTTCGCATGTATCAATACCAGCGTTGAAGCTTTAGAAAATG ACGGCTCTAAACCAAACGAT
Downstream 100 bases:
>100_bases AATGCGCATTAACAGAGAAGAAATTTTAGATCTAATGAAAAACGCGCCCTTGAAAGAATTAGGGCAAAAGGCTTTAGAAA TCAAGCAACGCTTGCACCCT
Product: protective surface antigen D15
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 881; Mature: 880
Protein sequence:
>881_residues MTSPKEASQESQKNEAQRNEAQKETSQSNQTPKEMKVKSVSYVGLSYMSDMLANEIVKIRVGDIVDSKKIDTAVLALFNQ GYFKDVYATFEGGILEFHFDEKARIAGVEIKGYGTEKEKDGLKSQMGIKKGDTFDEQKLEHAKTALKSALEGQGYYGSVV EVRTQKVSEGALLIVFDVNRGDSIYIKQSIYEGSAKLKRRMIESLSANKQRDFMGWMWGLNDGKLRLDQLEYDSMRIQDV YMRRGYLDAHISSPFLKTDFSTHDAKLHYKVKEGIQYRISDILIEIDNPVVPLKTLEKALKVKRKDVFNIEHLRADAQIL KTEIADKGYAFAVVKPDLDKDEKNGLVKVIYRIEVGDMVYINDVIISGNQRTSDRIIRRELLLGPKDKYNLTKLRNSENS LRRLGFFSKVKIEEKRVNSSLMDLLVSVEEGRTGQLQFGLGYGSYGGLMLNGSVSERNLFGTGQSMSLYANIATGGGRSY PGMPKGAGRMFAGNLSLTNPRIFDSWYSSTINLYADYRISYQYIQQGGGFGVNVGRMLGNRTHVSLGYNLNVTKLLGFSS PLYNRYYSSVNEVVAPRQCSTPASVIINRLSGGKTPLQPENCSSPGAITTSPEIKGIWDRDYHTPITSSFTLDVSYDNTD DYYFPRNGVIFSSYATMSGLPSSGTLNSWNGLGGNVRNTKVYGKFAAYHHLQKYLLIDLIARFKTQGGYIFRYNTDDYLP LNSTFYMGGVTTVRGFRNGSVTPKDEFGLWLGGDGIFTASTELSYGVLKAAKMRLAWFFDFGFLTFKTPTRGSFFYNAPF TTANFKDYGVIGAGFERATWRASTGLQIEWISPMGPLVLIFPIAFFNQWGDGNGKKCKGLCFNPNMNDYTQHFEFSMGTR F
Sequences:
>Translated_881_residues MTSPKEASQESQKNEAQRNEAQKETSQSNQTPKEMKVKSVSYVGLSYMSDMLANEIVKIRVGDIVDSKKIDTAVLALFNQ GYFKDVYATFEGGILEFHFDEKARIAGVEIKGYGTEKEKDGLKSQMGIKKGDTFDEQKLEHAKTALKSALEGQGYYGSVV EVRTQKVSEGALLIVFDVNRGDSIYIKQSIYEGSAKLKRRMIESLSANKQRDFMGWMWGLNDGKLRLDQLEYDSMRIQDV YMRRGYLDAHISSPFLKTDFSTHDAKLHYKVKEGIQYRISDILIEIDNPVVPLKTLEKALKVKRKDVFNIEHLRADAQIL KTEIADKGYAFAVVKPDLDKDEKNGLVKVIYRIEVGDMVYINDVIISGNQRTSDRIIRRELLLGPKDKYNLTKLRNSENS LRRLGFFSKVKIEEKRVNSSLMDLLVSVEEGRTGQLQFGLGYGSYGGLMLNGSVSERNLFGTGQSMSLYANIATGGGRSY PGMPKGAGRMFAGNLSLTNPRIFDSWYSSTINLYADYRISYQYIQQGGGFGVNVGRMLGNRTHVSLGYNLNVTKLLGFSS PLYNRYYSSVNEVVAPRQCSTPASVIINRLSGGKTPLQPENCSSPGAITTSPEIKGIWDRDYHTPITSSFTLDVSYDNTD DYYFPRNGVIFSSYATMSGLPSSGTLNSWNGLGGNVRNTKVYGKFAAYHHLQKYLLIDLIARFKTQGGYIFRYNTDDYLP LNSTFYMGGVTTVRGFRNGSVTPKDEFGLWLGGDGIFTASTELSYGVLKAAKMRLAWFFDFGFLTFKTPTRGSFFYNAPF TTANFKDYGVIGAGFERATWRASTGLQIEWISPMGPLVLIFPIAFFNQWGDGNGKKCKGLCFNPNMNDYTQHFEFSMGTR F >Mature_880_residues TSPKEASQESQKNEAQRNEAQKETSQSNQTPKEMKVKSVSYVGLSYMSDMLANEIVKIRVGDIVDSKKIDTAVLALFNQG YFKDVYATFEGGILEFHFDEKARIAGVEIKGYGTEKEKDGLKSQMGIKKGDTFDEQKLEHAKTALKSALEGQGYYGSVVE VRTQKVSEGALLIVFDVNRGDSIYIKQSIYEGSAKLKRRMIESLSANKQRDFMGWMWGLNDGKLRLDQLEYDSMRIQDVY MRRGYLDAHISSPFLKTDFSTHDAKLHYKVKEGIQYRISDILIEIDNPVVPLKTLEKALKVKRKDVFNIEHLRADAQILK TEIADKGYAFAVVKPDLDKDEKNGLVKVIYRIEVGDMVYINDVIISGNQRTSDRIIRRELLLGPKDKYNLTKLRNSENSL RRLGFFSKVKIEEKRVNSSLMDLLVSVEEGRTGQLQFGLGYGSYGGLMLNGSVSERNLFGTGQSMSLYANIATGGGRSYP GMPKGAGRMFAGNLSLTNPRIFDSWYSSTINLYADYRISYQYIQQGGGFGVNVGRMLGNRTHVSLGYNLNVTKLLGFSSP LYNRYYSSVNEVVAPRQCSTPASVIINRLSGGKTPLQPENCSSPGAITTSPEIKGIWDRDYHTPITSSFTLDVSYDNTDD YYFPRNGVIFSSYATMSGLPSSGTLNSWNGLGGNVRNTKVYGKFAAYHHLQKYLLIDLIARFKTQGGYIFRYNTDDYLPL NSTFYMGGVTTVRGFRNGSVTPKDEFGLWLGGDGIFTASTELSYGVLKAAKMRLAWFFDFGFLTFKTPTRGSFFYNAPFT TANFKDYGVIGAGFERATWRASTGLQIEWISPMGPLVLIFPIAFFNQWGDGNGKKCKGLCFNPNMNDYTQHFEFSMGTRF
Specific function: Unknown
COG id: COG4775
COG function: function code M; Outer membrane protein/protective antigen OMA87
Gene ontology:
Cell location: Cell outer membrane (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the surface antigen D15 family [H]
Homologues:
Organism=Escherichia coli, GI1786374, Length=437, Percent_Identity=23.7986270022883, Blast_Score=123, Evalue=5e-29,
Paralogues:
None
Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000184 - InterPro: IPR016474 - InterPro: IPR010827 [H]
Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]
EC number: NA
Molecular weight: Translated: 98895; Mature: 98763
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSPKEASQESQKNEAQRNEAQKETSQSNQTPKEMKVKSVSYVGLSYMSDMLANEIVKIR CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEHEEHHHHHHHHHHHHHHEEEEE VGDIVDSKKIDTAVLALFNQGYFKDVYATFEGGILEFHFDEKARIAGVEIKGYGTEKEKD ECCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEECCCCEEEEEEEECCCCCHHHH GLKSQMGIKKGDTFDEQKLEHAKTALKSALEGQGYYGSVVEVRTQKVSEGALLIVFDVNR CHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEECCC GDSIYIKQSIYEGSAKLKRRMIESLSANKQRDFMGWMWGLNDGKLRLDQLEYDSMRIQDV CCEEEEEECHHCCHHHHHHHHHHHHCCCCCCCHHHEEEECCCCCEEEEEECCCCCHHHHH YMRRGYLDAHISSPFLKTDFSTHDAKLHYKVKEGIQYRISDILIEIDNPVVPLKTLEKAL HHHCCCEEECCCCCEEECCCCCCCEEEEEEECCCHHEEEEEEEEECCCCEECHHHHHHHH KVKRKDVFNIEHLRADAQILKTEIADKGYAFAVVKPDLDKDEKNGLVKVIYRIEVGDMVY HHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEEEEEECCEEE INDVIISGNQRTSDRIIRRELLLGPKDKYNLTKLRNSENSLRRLGFFSKVKIEEKRVNSS EEEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHCCHHHEEEHHHHHHHH LMDLLVSVEEGRTGQLQFGLGYGSYGGLMLNGSVSERNLFGTGQSMSLYANIATGGGRSY HHHHHHHHCCCCCCEEEEECCCCCCCCEEEECCCCCCEEECCCCCEEEEEEEECCCCCCC PGMPKGAGRMFAGNLSLTNPRIFDSWYSSTINLYADYRISYQYIQQGGGFGVNVGRMLGN CCCCCCCCCEEECCEECCCCCHHHHHHCCEEEEEEEEEEEEEHHHCCCCCCEEHHHHHCC RTHVSLGYNLNVTKLLGFSSPLYNRYYSSVNEVVAPRQCSTPASVIINRLSGGKTPLQPE CEEEEEECCCCHHHEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCC NCSSPGAITTSPEIKGIWDRDYHTPITSSFTLDVSYDNTDDYYFPRNGVIFSSYATMSGL CCCCCCCEECCCCCCEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCEEEECCHHHCCC PSSGTLNSWNGLGGNVRNTKVYGKFAAYHHLQKYLLIDLIARFKTQGGYIFRYNTDDYLP CCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEC LNSTFYMGGVTTVRGFRNGSVTPKDEFGLWLGGDGIFTASTELSYGVLKAAKMRLAWFFD CCCEEEECCEEEEEECCCCCCCCCHHCCEEECCCEEEEECCCCHHHHHHHHHHEEEEEEE FGFLTFKTPTRGSFFYNAPFTTANFKDYGVIGAGFERATWRASTGLQIEWISPMGPLVLI ECEEEEECCCCCCEEECCCCCCCCCCCCCEEECCCCCCEEECCCCEEEEEECCCCCCHHH FPIAFFNQWGDGNGKKCKGLCFNPNMNDYTQHFEFSMGTRF HHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHEEEECCCCC >Mature Secondary Structure TSPKEASQESQKNEAQRNEAQKETSQSNQTPKEMKVKSVSYVGLSYMSDMLANEIVKIR CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEEHEEHHHHHHHHHHHHHHEEEEE VGDIVDSKKIDTAVLALFNQGYFKDVYATFEGGILEFHFDEKARIAGVEIKGYGTEKEKD ECCCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEECCCCEEEEEEEECCCCCHHHH GLKSQMGIKKGDTFDEQKLEHAKTALKSALEGQGYYGSVVEVRTQKVSEGALLIVFDVNR CHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEECCC GDSIYIKQSIYEGSAKLKRRMIESLSANKQRDFMGWMWGLNDGKLRLDQLEYDSMRIQDV CCEEEEEECHHCCHHHHHHHHHHHHCCCCCCCHHHEEEECCCCCEEEEEECCCCCHHHHH YMRRGYLDAHISSPFLKTDFSTHDAKLHYKVKEGIQYRISDILIEIDNPVVPLKTLEKAL HHHCCCEEECCCCCEEECCCCCCCEEEEEEECCCHHEEEEEEEEECCCCEECHHHHHHHH KVKRKDVFNIEHLRADAQILKTEIADKGYAFAVVKPDLDKDEKNGLVKVIYRIEVGDMVY HHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEEEEEEEECCEEE INDVIISGNQRTSDRIIRRELLLGPKDKYNLTKLRNSENSLRRLGFFSKVKIEEKRVNSS EEEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHHCCHHHEEEHHHHHHHH LMDLLVSVEEGRTGQLQFGLGYGSYGGLMLNGSVSERNLFGTGQSMSLYANIATGGGRSY HHHHHHHHCCCCCCEEEEECCCCCCCCEEEECCCCCCEEECCCCCEEEEEEEECCCCCCC PGMPKGAGRMFAGNLSLTNPRIFDSWYSSTINLYADYRISYQYIQQGGGFGVNVGRMLGN CCCCCCCCCEEECCEECCCCCHHHHHHCCEEEEEEEEEEEEEHHHCCCCCCEEHHHHHCC RTHVSLGYNLNVTKLLGFSSPLYNRYYSSVNEVVAPRQCSTPASVIINRLSGGKTPLQPE CEEEEEECCCCHHHEECCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCC NCSSPGAITTSPEIKGIWDRDYHTPITSSFTLDVSYDNTDDYYFPRNGVIFSSYATMSGL CCCCCCCEECCCCCCEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCEEEECCHHHCCC PSSGTLNSWNGLGGNVRNTKVYGKFAAYHHLQKYLLIDLIARFKTQGGYIFRYNTDDYLP CCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEC LNSTFYMGGVTTVRGFRNGSVTPKDEFGLWLGGDGIFTASTELSYGVLKAAKMRLAWFFD CCCEEEECCEEEEEECCCCCCCCCHHCCEEECCCEEEEECCCCHHHHHHHHHHEEEEEEE FGFLTFKTPTRGSFFYNAPFTTANFKDYGVIGAGFERATWRASTGLQIEWISPMGPLVLI ECEEEEECCCCCCEEECCCCCCCCCCCCCEEECCCCCCEEECCCCEEEEEECCCCCCHHH FPIAFFNQWGDGNGKKCKGLCFNPNMNDYTQHFEFSMGTRF HHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10710307 [H]