| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527276
Identifier: 188527276
GI number: 188527276
Start: 465596
End: 466195
Strand: Direct
Name: 188527276
Synonym: HPSH_02415
Alternate gene names: NA
Gene position: 465596-466195 (Clockwise)
Preceding gene: 188527274
Following gene: 188527278
Centisome position: 28.95
GC content: 37.5
Gene sequence:
>600_bases TTGGGAGGTATTGATTTTGTTTGGGGTAATAAAGATTACGGGTTAGAACACATTTTACAACGCCGAGAAGAACAAGCCAT AGCTAAAGGCTTAAACGAAGCCAAAGCCAAAGAATACGCCCTAACCGTAGTTAAAACAATCCCTGAGATTATAGAAAAAG GCGTTAAGGTTGATAATAACGGACGAATAGCTATTGAATACCAAAATATAAGAGTAGGTCTAAAAGATAATTGGAAGGGA GAAAAACTACCTAATCATTGGGTTATAACAAGTTATGAAAAAAGGTTAGAGAATAGTGAAAGTTTATATTCATCTCCACT AATCACAAAGAGTGAGCATCTACTCTTAAACTCTAACGAACCTAATCCTACCACAAACGCGCTAAAAAAGCAAGAGCCTT TAAGCGAACAAGCCAAAGCTGAAAAGCTTGCTAAATTAGAAAGCGAGAAACGGATAAAAGAAGTAAGCAAAAAGAGTGCA GAGAAAACAGAGAACCAATTTACATTAAAGCAGAGATTGACAAGGCGGACATTATCCACTCTTTCATTCCGCAGGCAAGA ACGCTTAAAGAATAAGCCGATGGAGTGGGCTTGCGTTTAA
Upstream 100 bases:
>100_bases CAAGAATTACCCCGAGTTTGCCCTAAAGCCTAAGGAAGCGTTAGAAAAACTCTTACAAGAGAAAAACGGACAAGTCGCAG GCGCAGCGTATAGGGACGAT
Downstream 100 bases:
>100_bases AGTATAAGATAAAATCGTTAATCAGTCAAGGAGTAAGAAGATGAAAAGAAAGCCTCAAGCCAGCAGTCAAAAAAACCGCT ATGTTCACGCTTAAATTTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 199; Mature: 198
Protein sequence:
>199_residues MGGIDFVWGNKDYGLEHILQRREEQAIAKGLNEAKAKEYALTVVKTIPEIIEKGVKVDNNGRIAIEYQNIRVGLKDNWKG EKLPNHWVITSYEKRLENSESLYSSPLITKSEHLLLNSNEPNPTTNALKKQEPLSEQAKAEKLAKLESEKRIKEVSKKSA EKTENQFTLKQRLTRRTLSTLSFRRQERLKNKPMEWACV
Sequences:
>Translated_199_residues MGGIDFVWGNKDYGLEHILQRREEQAIAKGLNEAKAKEYALTVVKTIPEIIEKGVKVDNNGRIAIEYQNIRVGLKDNWKG EKLPNHWVITSYEKRLENSESLYSSPLITKSEHLLLNSNEPNPTTNALKKQEPLSEQAKAEKLAKLESEKRIKEVSKKSA EKTENQFTLKQRLTRRTLSTLSFRRQERLKNKPMEWACV >Mature_198_residues GGIDFVWGNKDYGLEHILQRREEQAIAKGLNEAKAKEYALTVVKTIPEIIEKGVKVDNNGRIAIEYQNIRVGLKDNWKGE KLPNHWVITSYEKRLENSESLYSSPLITKSEHLLLNSNEPNPTTNALKKQEPLSEQAKAEKLAKLESEKRIKEVSKKSAE KTENQFTLKQRLTRRTLSTLSFRRQERLKNKPMEWACV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22975; Mature: 22843
Theoretical pI: Translated: 10.13; Mature: 10.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGGIDFVWGNKDYGLEHILQRREEQAIAKGLNEAKAKEYALTVVKTIPEIIEKGVKVDNN CCCCCEEECCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCEECCC GRIAIEYQNIRVGLKDNWKGEKLPNHWVITSYEKRLENSESLYSSPLITKSEHLLLNSNE CEEEEEEEEEEECCCCCCCCCCCCCCEEEEHHHHHCCCCHHHHCCCCCCCCCEEEEECCC PNPTTNALKKQEPLSEQAKAEKLAKLESEKRIKEVSKKSAEKTENQFTLKQRLTRRTLST CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSFRRQERLKNKPMEWACV HHHHHHHHHHCCCCCCCCC >Mature Secondary Structure GGIDFVWGNKDYGLEHILQRREEQAIAKGLNEAKAKEYALTVVKTIPEIIEKGVKVDNN CCCCEEECCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCEECCC GRIAIEYQNIRVGLKDNWKGEKLPNHWVITSYEKRLENSESLYSSPLITKSEHLLLNSNE CEEEEEEEEEEECCCCCCCCCCCCCCEEEEHHHHHCCCCHHHHCCCCCCCCCEEEEECCC PNPTTNALKKQEPLSEQAKAEKLAKLESEKRIKEVSKKSAEKTENQFTLKQRLTRRTLST CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LSFRRQERLKNKPMEWACV HHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA