| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527266
Identifier: 188527266
GI number: 188527266
Start: 456884
End: 457813
Strand: Direct
Name: 188527266
Synonym: HPSH_02365
Alternate gene names: NA
Gene position: 456884-457813 (Clockwise)
Preceding gene: 188527265
Following gene: 188527267
Centisome position: 28.4
GC content: 34.52
Gene sequence:
>930_bases ATGCATGCCAATTTATTCAACCAAAACGCTAGTAAAAAAGATGTTTTTTTGCACAATTTACGCTCCAATAATGGGCGTTA CAAACGCTACATAAAAGCCCCTTTAAGATATGGTGGGGGCAAGTCTTTAGCTGTAGGGTTAATAGTGGAGTATATACCTA ATGGTGTGCGTAGGATTATTAGCCCTTTTATAGGTGGGGGGAGCGTAGAAATTGCATGCGCAACAGAGTTGGGTTTAGAA GTGTTGGGCTTTGATATTTTTGACATTTTAGTGAATTTTTATCAAGTGCTACTCAAAGACAAACAAGCTCTTTATAATAA TTTACTCTCTTTAGAACCTACACAAGAAACTTACAACATTATCAAACAAGAGTTAAAAGCCCATTATAAAAAAGAATGCG TTTTAGACCCTTTAATTTTGGCTAGAGATTATTACTTTAACTTTAATTTAAGCTATGGGCCAGGATTTTTAGGGTGGATG AGTAAAATTTACACTGACAAACAACGCTATCTAAACGCCCTTTTAAAAATTAAAGGTTTTAACGCCCCTAGTTTAAAGGT GGAATGCTCTAGTTTTGAAGAAGTGTTGCTCGCTTATCCTAATGATTTTTTCTATCTTGACCCCCCTTATGTGTTAGAAA ATTCTAAAATGTTTAAGGGGATTTATCCTATGCGTAATTTTCCTATCCACCATAATGGTTTTAAACATGAAGTCTTAGCT CGCATGCTAAAAAGGCATAAAGGGTCATTTATTTTAAGTTATAATGACTGCGAATTTGTAAGGAATGCTTATAAAAATTT TAAAATTTTAGAGCCATCTTGGCAATACACTATGGGACAAGGCGAGATCAGAATGGGTAAAAATCGCTTAGAAAGAGGCG ATAATAACCATGTCAAACAATCTCATGAGTTATTGATTATCAAGGAGTAA
Upstream 100 bases:
>100_bases TGAGATTTTAGAAGTTACCCCCTTGAATTTAAGGATCAGGAAAAAGATTTTAGACCCCAACATGAGGAAAAGGGCGAAAA AATAAATAGAATTTTTTGGA
Downstream 100 bases:
>100_bases AAATGCATATTAGCGAAGTCAAAACTGCCTTTAAAATCGCTGATGTAGAATATGTGAAAGACAGCACAAAGTTAAATTTC AACTATCTTAAGGATTTAAA
Product: type II adenine specific DNA methyltransferase
Products: NA
Alternate protein names: Type II DNA Methyltransferase; DNA Adenine Methylase; Type II DNA; Adenine Specific DNA Methyltransferase; D12 Class N6 Adenine-Specific DNA Methyltransferase; Methylase; Site-Specific DNA Methylase
Number of amino acids: Translated: 309; Mature: 309
Protein sequence:
>309_residues MHANLFNQNASKKDVFLHNLRSNNGRYKRYIKAPLRYGGGKSLAVGLIVEYIPNGVRRIISPFIGGGSVEIACATELGLE VLGFDIFDILVNFYQVLLKDKQALYNNLLSLEPTQETYNIIKQELKAHYKKECVLDPLILARDYYFNFNLSYGPGFLGWM SKIYTDKQRYLNALLKIKGFNAPSLKVECSSFEEVLLAYPNDFFYLDPPYVLENSKMFKGIYPMRNFPIHHNGFKHEVLA RMLKRHKGSFILSYNDCEFVRNAYKNFKILEPSWQYTMGQGEIRMGKNRLERGDNNHVKQSHELLIIKE
Sequences:
>Translated_309_residues MHANLFNQNASKKDVFLHNLRSNNGRYKRYIKAPLRYGGGKSLAVGLIVEYIPNGVRRIISPFIGGGSVEIACATELGLE VLGFDIFDILVNFYQVLLKDKQALYNNLLSLEPTQETYNIIKQELKAHYKKECVLDPLILARDYYFNFNLSYGPGFLGWM SKIYTDKQRYLNALLKIKGFNAPSLKVECSSFEEVLLAYPNDFFYLDPPYVLENSKMFKGIYPMRNFPIHHNGFKHEVLA RMLKRHKGSFILSYNDCEFVRNAYKNFKILEPSWQYTMGQGEIRMGKNRLERGDNNHVKQSHELLIIKE >Mature_309_residues MHANLFNQNASKKDVFLHNLRSNNGRYKRYIKAPLRYGGGKSLAVGLIVEYIPNGVRRIISPFIGGGSVEIACATELGLE VLGFDIFDILVNFYQVLLKDKQALYNNLLSLEPTQETYNIIKQELKAHYKKECVLDPLILARDYYFNFNLSYGPGFLGWM SKIYTDKQRYLNALLKIKGFNAPSLKVECSSFEEVLLAYPNDFFYLDPPYVLENSKMFKGIYPMRNFPIHHNGFKHEVLA RMLKRHKGSFILSYNDCEFVRNAYKNFKILEPSWQYTMGQGEIRMGKNRLERGDNNHVKQSHELLIIKE
Specific function: Unknown
COG id: COG0338
COG function: function code L; Site-specific DNA methylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35878; Mature: 35878
Theoretical pI: Translated: 9.60; Mature: 9.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHANLFNQNASKKDVFLHNLRSNNGRYKRYIKAPLRYGGGKSLAVGLIVEYIPNGVRRII CCCCCCCCCCCCHHHHHHHHHCCCCCEEHHEECHHHCCCCCHHHHHHHHHHHCHHHHHHH SPFIGGGSVEIACATELGLEVLGFDIFDILVNFYQVLLKDKQALYNNLLSLEPTQETYNI HHHCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH IKQELKAHYKKECVLDPLILARDYYFNFNLSYGPGFLGWMSKIYTDKQRYLNALLKIKGF HHHHHHHHHHHHHHCCHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC NAPSLKVECSSFEEVLLAYPNDFFYLDPPYVLENSKMFKGIYPMRNFPIHHNGFKHEVLA CCCCEEEECCCHHHHHHCCCCCEEEECCCEEECCCCHHHCCCCCCCCCCCCCCCHHHHHH RMLKRHKGSFILSYNDCEFVRNAYKNFKILEPSWQYTMGQGEIRMGKNRLERGDNNHVKQ HHHHHCCCCEEEEECCHHHHHHHHHCCEEECCCCCEECCCCCEEECHHHHHCCCCCCCCC SHELLIIKE CCCEEEEEC >Mature Secondary Structure MHANLFNQNASKKDVFLHNLRSNNGRYKRYIKAPLRYGGGKSLAVGLIVEYIPNGVRRII CCCCCCCCCCCCHHHHHHHHHCCCCCEEHHEECHHHCCCCCHHHHHHHHHHHCHHHHHHH SPFIGGGSVEIACATELGLEVLGFDIFDILVNFYQVLLKDKQALYNNLLSLEPTQETYNI HHHCCCCCEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH IKQELKAHYKKECVLDPLILARDYYFNFNLSYGPGFLGWMSKIYTDKQRYLNALLKIKGF HHHHHHHHHHHHHHCCHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC NAPSLKVECSSFEEVLLAYPNDFFYLDPPYVLENSKMFKGIYPMRNFPIHHNGFKHEVLA CCCCEEEECCCHHHHHHCCCCCEEEECCCEEECCCCHHHCCCCCCCCCCCCCCCHHHHHH RMLKRHKGSFILSYNDCEFVRNAYKNFKILEPSWQYTMGQGEIRMGKNRLERGDNNHVKQ HHHHHCCCCEEEEECCHHHHHHHHHCCEEECCCCCEECCCCCEEECHHHHHCCCCCCCCC SHELLIIKE CCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA