Click here to switch to the map view.

The map label for this gene is rimP [H]

Identifier: 188527211

GI number: 188527211

Start: 397164

End: 397604

Strand: Direct

Name: rimP [H]

Synonym: HPSH_02090

Alternate gene names: 188527211

Gene position: 397164-397604 (Clockwise)

Preceding gene: 188527210

Following gene: 188527212

Centisome position: 24.69

GC content: 37.64

Gene sequence:

>441_bases
ATGACTAAAAAAATAGAAGAGAAAATAGAGGGCGTGATTGAAAGTTTGGGTTATTTGCTTTATGATGTGAGTTTGATTAA
AGAAAATGAGCAGCATGTTTTAAGGGTGAGCCTTAAAAACCCTAACGGAGCGGTTAGCTTGGATATTTGCCAGCAAGTGA
GCGAGATCATTTCGCCCTTATTAGATGTGTGCGATTTTATTCAAGACGCTTATATTTTGGAAGTGAGCTCTATGGGGTTA
GAAAGAACGCTTAAAACCCCCAAACACTTCAAGCTTTCTTTAGGCGAAAAAGTGGAAGTCAAACTCACAAATAAAGAAAG
CTTCCAAGCTGTCCTTAAAGACGCTAACGATTTGAGCGCGGATTTTGAATTAGAAGATCATGCTATCAAAAGCGTGGAGT
ATAAAGATTTAAAGAAAGTTAAAACGCTTTTTGAGTGGTGA

Upstream 100 bases:

>100_bases
TGGTTTAAATGCCCAAAACTCAGTTTTGTTTTAGATAACAGCTTAGAAAAGCAGCTTCGCCTAGACGCTATATTTAATGA
AATCGCTAAAGGGAAAGATA

Downstream 100 bases:

>100_bases
GATTATTTTTTGAATATTAAAAATAGCGCTAGTCATAAGGGTAATTTGGATTATAAAAGCCATTAAATTGAGAATGATAA
GGCGTTAAATTAAGGATATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 145

Protein sequence:

>146_residues
MTKKIEEKIEGVIESLGYLLYDVSLIKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVCDFIQDAYILEVSSMGL
ERTLKTPKHFKLSLGEKVEVKLTNKESFQAVLKDANDLSADFELEDHAIKSVEYKDLKKVKTLFEW

Sequences:

>Translated_146_residues
MTKKIEEKIEGVIESLGYLLYDVSLIKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVCDFIQDAYILEVSSMGL
ERTLKTPKHFKLSLGEKVEVKLTNKESFQAVLKDANDLSADFELEDHAIKSVEYKDLKKVKTLFEW
>Mature_145_residues
TKKIEEKIEGVIESLGYLLYDVSLIKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPLLDVCDFIQDAYILEVSSMGLE
RTLKTPKHFKLSLGEKVEVKLTNKESFQAVLKDANDLSADFELEDHAIKSVEYKDLKKVKTLFEW

Specific function: Required for maturation of 30S ribosomal subunits [H]

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family [H]

Homologues:

Organism=Escherichia coli, GI226510978, Length=115, Percent_Identity=35.6521739130435, Blast_Score=66, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003728 [H]

Pfam domain/function: PF02576 DUF150 [H]

EC number: NA

Molecular weight: Translated: 16629; Mature: 16498

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKIEEKIEGVIESLGYLLYDVSLIKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEHHHHHHHHHHHHHH
LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTNKESFQAVLKDANDLSA
HHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEECCCEEEEEECCHHHHHHHHHCCCCCCC
DFELEDHAIKSVEYKDLKKVKTLFEW
CCEEHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TKKIEEKIEGVIESLGYLLYDVSLIKENEQHVLRVSLKNPNGAVSLDICQQVSEIISPL
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEHHHHHHHHHHHHHH
LDVCDFIQDAYILEVSSMGLERTLKTPKHFKLSLGEKVEVKLTNKESFQAVLKDANDLSA
HHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEECCCEEEEEECCHHHHHHHHHCCCCCCC
DFELEDHAIKSVEYKDLKKVKTLFEW
CCEEHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA