Click here to switch to the map view.

The map label for this gene is rbfA

Identifier: 188527210

GI number: 188527210

Start: 396836

End: 397171

Strand: Direct

Name: rbfA

Synonym: HPSH_02085

Alternate gene names: 188527210

Gene position: 396836-397171 (Clockwise)

Preceding gene: 188527209

Following gene: 188527211

Centisome position: 24.67

GC content: 38.99

Gene sequence:

>336_bases
ATGAACGCTCATAAAGAACGCTTAGAATCCAATCTTTTAGAATTATTGCAAGAGGCTTTAGCGAGCTTGAACGACAGCGA
GTTGAATTCTTTAAGCGTTACTAGAGTGGAATGCTCTAAAGGGAAGCACCACGCTTTTGTGTTTGTGCTTTCACAAGATC
ATAAAATCCTTTCCAAATTAAAAAAAGCTGAGGGCTTGATCAGGCAGTTTGTTTTGCAGGCGAGCGGGTGGTTTAAATGC
CCAAAACTCAGTTTTGTTTTAGATAACAGCTTAGAAAAGCAGCTTCGCCTAGACGCTATATTTAATGAAATCGCTAAAGG
GAAAGATAATGACTAA

Upstream 100 bases:

>100_bases
AGGGCTATGAGTGCGGGATCATGCTGGACAATTATAATGAGATTAAAGTGGGCGATGTGTTTGAAACCTATAAAGAAATC
CATAAAAAAAGAACCCTCTA

Downstream 100 bases:

>100_bases
AAAAATAGAAGAGAAAATAGAGGGCGTGATTGAAAGTTTGGGTTATTTGCTTTATGATGTGAGTTTGATTAAAGAAAATG
AGCAGCATGTTTTAAGGGTG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MNAHKERLESNLLELLQEALASLNDSELNSLSVTRVECSKGKHHAFVFVLSQDHKILSKLKKAEGLIRQFVLQASGWFKC
PKLSFVLDNSLEKQLRLDAIFNEIAKGKDND

Sequences:

>Translated_111_residues
MNAHKERLESNLLELLQEALASLNDSELNSLSVTRVECSKGKHHAFVFVLSQDHKILSKLKKAEGLIRQFVLQASGWFKC
PKLSFVLDNSLEKQLRLDAIFNEIAKGKDND
>Mature_111_residues
MNAHKERLESNLLELLQEALASLNDSELNSLSVTRVECSKGKHHAFVFVLSQDHKILSKLKKAEGLIRQFVLQASGWFKC
PKLSFVLDNSLEKQLRLDAIFNEIAKGKDND

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 12579; Mature: 12579

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAHKERLESNLLELLQEALASLNDSELNSLSVTRVECSKGKHHAFVFVLSQDHKILSKL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCHHHHHHH
KKAEGLIRQFVLQASGWFKCPKLSFVLDNSLEKQLRLDAIFNEIAKGKDND
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNAHKERLESNLLELLQEALASLNDSELNSLSVTRVECSKGKHHAFVFVLSQDHKILSKL
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCHHHHHHH
KKAEGLIRQFVLQASGWFKCPKLSFVLDNSLEKQLRLDAIFNEIAKGKDND
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA