| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527178
Identifier: 188527178
GI number: 188527178
Start: 369009
End: 369671
Strand: Direct
Name: 188527178
Synonym: HPSH_01925
Alternate gene names: NA
Gene position: 369009-369671 (Clockwise)
Preceding gene: 188527177
Following gene: 188527179
Centisome position: 22.94
GC content: 28.36
Gene sequence:
>663_bases ATGAGTAAAAAGATACTTATTTATACAGAAGGAAAAAGCGATAGAAACTTTCTGGGTTGGTATCTTAATTTTTTGAAATG CGAGAATCGTTTTGATATATTTGATATAGAAGGTAAAGATAAGCTAATTTCAGATGAGTTTCTGAAAAAGATTGACAAAA TTTTAAATAATGAACATCAAGCATATAAACAAGTGTGTATTATTTTTGACGCAGACAAGAAAGAGAGTCAAGAAAGTGAT GCGGGTTTTGATAATAAGCTTGAGCATATTTGTGAAAAACTCAAAGAAAAAGAGATTAACTTTCCAAGAGAACAAATCTT TTTATTCCCTAACAATCAAGATGATGGTGATTTAGAAACCCTACTATTAGAAATTGCTAAACACGATAAATTTCTTAAAC GCTTTGAAGGATACTTAGAATGCATTAAAAGTAAAGAACATTATAAACCGATTAAAAACAAAAGTAAGTGGTATGCCTAT TTAGAAGCGTCTGGGTTAGAGGATCTAAATACCAAAAAAAATATTTTTGATAACGAAGGTAAAGTAAAGAATGAATATAA AGAAGACTATGAAAGATTAAAAAAAGCTATCAAGTTTGAATCAGACATTCTCGTTCCCCTTAAAAATTTTTTAGGGCAAT TTGCAGAAAATAATCAAAAATAA
Upstream 100 bases:
>100_bases TCAATCGTTGCAGAGCCTTATTATGGAGAAAATCTATCTCTTTATTTCAAAAATCATGCCAATCTTTTTGGAGGTAAAGA AAGATTTAAGGAAAATAATT
Downstream 100 bases:
>100_bases ATCCTAAAGTTTTCTAATTTAACAAAATATATTACAATTACCCAAAAAGTATTATTTTTCTTAAAAGGTGCACTGTGAAA TTGTGGTTTCCTTATTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 220; Mature: 219
Protein sequence:
>220_residues MSKKILIYTEGKSDRNFLGWYLNFLKCENRFDIFDIEGKDKLISDEFLKKIDKILNNEHQAYKQVCIIFDADKKESQESD AGFDNKLEHICEKLKEKEINFPREQIFLFPNNQDDGDLETLLLEIAKHDKFLKRFEGYLECIKSKEHYKPIKNKSKWYAY LEASGLEDLNTKKNIFDNEGKVKNEYKEDYERLKKAIKFESDILVPLKNFLGQFAENNQK
Sequences:
>Translated_220_residues MSKKILIYTEGKSDRNFLGWYLNFLKCENRFDIFDIEGKDKLISDEFLKKIDKILNNEHQAYKQVCIIFDADKKESQESD AGFDNKLEHICEKLKEKEINFPREQIFLFPNNQDDGDLETLLLEIAKHDKFLKRFEGYLECIKSKEHYKPIKNKSKWYAY LEASGLEDLNTKKNIFDNEGKVKNEYKEDYERLKKAIKFESDILVPLKNFLGQFAENNQK >Mature_219_residues SKKILIYTEGKSDRNFLGWYLNFLKCENRFDIFDIEGKDKLISDEFLKKIDKILNNEHQAYKQVCIIFDADKKESQESDA GFDNKLEHICEKLKEKEINFPREQIFLFPNNQDDGDLETLLLEIAKHDKFLKRFEGYLECIKSKEHYKPIKNKSKWYAYL EASGLEDLNTKKNIFDNEGKVKNEYKEDYERLKKAIKFESDILVPLKNFLGQFAENNQK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26204; Mature: 26073
Theoretical pI: Translated: 6.17; Mature: 6.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKKILIYTEGKSDRNFLGWYLNFLKCENRFDIFDIEGKDKLISDEFLKKIDKILNNEHQ CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCHHH AYKQVCIIFDADKKESQESDAGFDNKLEHICEKLKEKEINFPREQIFLFPNNQDDGDLET HHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHEEEECCCCCCCHHHHH LLLEIAKHDKFLKRFEGYLECIKSKEHYKPIKNKSKWYAYLEASGLEDLNTKKNIFDNEG HHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCC KVKNEYKEDYERLKKAIKFESDILVPLKNFLGQFAENNQK CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure SKKILIYTEGKSDRNFLGWYLNFLKCENRFDIFDIEGKDKLISDEFLKKIDKILNNEHQ CCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCHHH AYKQVCIIFDADKKESQESDAGFDNKLEHICEKLKEKEINFPREQIFLFPNNQDDGDLET HHHHEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHEEEECCCCCCCHHHHH LLLEIAKHDKFLKRFEGYLECIKSKEHYKPIKNKSKWYAYLEASGLEDLNTKKNIFDNEG HHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCEEEEEECCCCCCCCCHHHHCCCCC KVKNEYKEDYERLKKAIKFESDILVPLKNFLGQFAENNQK CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA