| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is 188527111
Identifier: 188527111
GI number: 188527111
Start: 308024
End: 308578
Strand: Direct
Name: 188527111
Synonym: HPSH_01580
Alternate gene names: NA
Gene position: 308024-308578 (Clockwise)
Preceding gene: 188527110
Following gene: 188527112
Centisome position: 19.15
GC content: 38.2
Gene sequence:
>555_bases ATGAAAAAAATGGTTTTGGTATCGGTTTTACTAGCAGGCTTTTTGCAAGCGGTGAATTTGGATTTATCTTCGGCTAAGCT AACATGGACGGCCTTTAAAACTAAGGCTAAAACACCGGTAAATGGGAGTTTTGAAAGCATCACCTATAAATTGGGCAAAT CTCAAGATAGTTTAAAAACCCTTTTAGAAGGGGCGAGTGCGAGCATGGATAGCTTGAAAGTCAATTTAGGCGATGACACT AAAAACAAAAATGTTAAAGAAGCTTTTTTCGCTCTTTTTAAAAACACTAACATCAAAGTAACTTTTAGAAATGTGATAGA AGGCGATCATGAAGGTTCTCTTACGGCTTATGTGAGGATGAATGAAAAACTGGTGAAAGTGCCTATGCAATACACGGTTG CTAGTGATAAGCTCGTGGTTAAAGGGGTCTTGGATCTATTGAATTTTGGCTTGAAAAACGAATTAGCGAGCTTAGCTAAA CGATGCGAGAGTTTTCATGAGGGCTTGACTTGGTCGCAAGTGGAAATCCAATTTGAAAGCATGATTAAGGGATAA
Upstream 100 bases:
>100_bases AGTGCAAATGATTATCAAAATGAATCGTTTTAGTTGTAAGCGTGCTTATTCACACTAAAACAATAAGCGTTATTGATAAG ACCACATTAAAGGATAATGA
Downstream 100 bases:
>100_bases TTTAAAATCATGGAGTTGTTGCACAGCATTAATGATTTTAATGAAGCTAAACAGGTGATCGCTGGGGGGGTCAATTCGCC TGTGAGGGCGTTTAAGAGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 184; Mature: 184
Protein sequence:
>184_residues MKKMVLVSVLLAGFLQAVNLDLSSAKLTWTAFKTKAKTPVNGSFESITYKLGKSQDSLKTLLEGASASMDSLKVNLGDDT KNKNVKEAFFALFKNTNIKVTFRNVIEGDHEGSLTAYVRMNEKLVKVPMQYTVASDKLVVKGVLDLLNFGLKNELASLAK RCESFHEGLTWSQVEIQFESMIKG
Sequences:
>Translated_184_residues MKKMVLVSVLLAGFLQAVNLDLSSAKLTWTAFKTKAKTPVNGSFESITYKLGKSQDSLKTLLEGASASMDSLKVNLGDDT KNKNVKEAFFALFKNTNIKVTFRNVIEGDHEGSLTAYVRMNEKLVKVPMQYTVASDKLVVKGVLDLLNFGLKNELASLAK RCESFHEGLTWSQVEIQFESMIKG >Mature_184_residues MKKMVLVSVLLAGFLQAVNLDLSSAKLTWTAFKTKAKTPVNGSFESITYKLGKSQDSLKTLLEGASASMDSLKVNLGDDT KNKNVKEAFFALFKNTNIKVTFRNVIEGDHEGSLTAYVRMNEKLVKVPMQYTVASDKLVVKGVLDLLNFGLKNELASLAK RCESFHEGLTWSQVEIQFESMIKG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20361; Mature: 20361
Theoretical pI: Translated: 9.96; Mature: 9.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKMVLVSVLLAGFLQAVNLDLSSAKLTWTAFKTKAKTPVNGSFESITYKLGKSQDSLKT CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCHHHHHEECCCCHHHHHH LLEGASASMDSLKVNLGDDTKNKNVKEAFFALFKNTNIKVTFRNVIEGDHEGSLTAYVRM HHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHCCCCCCCEEEEEEE NEKLVKVPMQYTVASDKLVVKGVLDLLNFGLKNELASLAKRCESFHEGLTWSQVEIQFES CCHHEECCHHEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHEEEHHH MIKG HCCC >Mature Secondary Structure MKKMVLVSVLLAGFLQAVNLDLSSAKLTWTAFKTKAKTPVNGSFESITYKLGKSQDSLKT CCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCHHHHHEECCCCHHHHHH LLEGASASMDSLKVNLGDDTKNKNVKEAFFALFKNTNIKVTFRNVIEGDHEGSLTAYVRM HHHCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHCCCCCCCEEEEEEE NEKLVKVPMQYTVASDKLVVKGVLDLLNFGLKNELASLAKRCESFHEGLTWSQVEIQFES CCHHEECCHHEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHEEEHHH MIKG HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA