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The map label for this gene is yibD [C]

Identifier: 187927728

GI number: 187927728

Start: 672450

End: 673391

Strand: Reverse

Name: yibD [C]

Synonym: Rpic_0632

Alternate gene names: 187927728

Gene position: 673391-672450 (Counterclockwise)

Preceding gene: 187927729

Following gene: 187927727

Centisome position: 17.08

GC content: 53.4

Gene sequence:

>942_bases
ATGAGCATTCTGCAGAATCACACCGCTCCGCTGGTGAGCGTACTGATACCGATATTTAACCATGCCAGATTCATCGAAAA
GTGCTTAGATAGCCTCTTGTCGACAGGCTGGGCTCATCTCGAACTCATCGCAATCGACGACGGTTCGTCAGACGAATCCC
TGAGCATCGCTCGCACGTGGGCTCAGCGGCACGAAAGTAGTTTCGTGCGCATTGATCTATCAACTCAGCAAAACCAAGGT
ATCACGCGAACATTAAACCGGCTTATCGAGCGCGCTCGCGGCGATTTCTTGGTTTTCCTTGCCAGCGATGATCTCCTGTT
GCCGGACAGTATTCGCGCCCGGTTGCTCGTCCTACTGAATCATCCCGACGCCCTTGCAATCTTCGCCGATGCGACGGCAA
TCGACGATGATGGTCGGCAAATTGCGAAATCAGTCCTGCGCGAACGCTTCCACGCAGATGTGGCAGCCCTGTCAAGTGAC
CGACGACGGGCGCTTGAATTGATCCTGAACTGGTCTGTGCCGGGTCCGGTGTTCATGGCGCGCCGCGTGGCTTTCGATAC
AGTTGGGAAGTACGACGAGCGATTCTTCATTGAGGATCGCGACTACTATCTGCGATTACTCGCTGACCAAACCCTTCTGT
ATCTCGACCAGCCGGTCGCGGCATACCGCATGCATGGCACGTCCATTTCAGGAAACAAGTTGCGCCAGATTCGCATAGGT
CAGGAAATCATGCGTATCGAACATAAATTGCTTCCGGCATTTACTGGCAGTGCAAAGCTTGCGTTGCAGTTACGCATCTG
GTCCAACACCTCGGCGATCTATACAAGTTCCATATGGTGCAAACCCTTTACGGCAGTACGCTGTGCTATGGCTCGCCTGA
TTGCCACTTGCATGCTGCTCGCAGTACGAGCCGATTTGATCTATTGGGCTCCTGCTAAATGA

Upstream 100 bases:

>100_bases
TGCCGTTGTTTGGCCTAAAGGGTGTCGTACTTGCGCACACCGTGAACTACATCGGTTATTGCGTAGCCTTATGGGTGGGC
CTGAAACAGGCTCGAGCACT

Downstream 100 bases:

>100_bases
AACATATTCCAGGCATCGATGGCCTCAGAGCACTGGCTGCACTCTCGGTCATATTTTTCCATCTTGAAGTGCCCGGCTTT
GCATGGGGGTGGACAGGCGT

Product: family 2 glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 312

Protein sequence:

>313_residues
MSILQNHTAPLVSVLIPIFNHARFIEKCLDSLLSTGWAHLELIAIDDGSSDESLSIARTWAQRHESSFVRIDLSTQQNQG
ITRTLNRLIERARGDFLVFLASDDLLLPDSIRARLLVLLNHPDALAIFADATAIDDDGRQIAKSVLRERFHADVAALSSD
RRRALELILNWSVPGPVFMARRVAFDTVGKYDERFFIEDRDYYLRLLADQTLLYLDQPVAAYRMHGTSISGNKLRQIRIG
QEIMRIEHKLLPAFTGSAKLALQLRIWSNTSAIYTSSIWCKPFTAVRCAMARLIATCMLLAVRADLIYWAPAK

Sequences:

>Translated_313_residues
MSILQNHTAPLVSVLIPIFNHARFIEKCLDSLLSTGWAHLELIAIDDGSSDESLSIARTWAQRHESSFVRIDLSTQQNQG
ITRTLNRLIERARGDFLVFLASDDLLLPDSIRARLLVLLNHPDALAIFADATAIDDDGRQIAKSVLRERFHADVAALSSD
RRRALELILNWSVPGPVFMARRVAFDTVGKYDERFFIEDRDYYLRLLADQTLLYLDQPVAAYRMHGTSISGNKLRQIRIG
QEIMRIEHKLLPAFTGSAKLALQLRIWSNTSAIYTSSIWCKPFTAVRCAMARLIATCMLLAVRADLIYWAPAK
>Mature_312_residues
SILQNHTAPLVSVLIPIFNHARFIEKCLDSLLSTGWAHLELIAIDDGSSDESLSIARTWAQRHESSFVRIDLSTQQNQGI
TRTLNRLIERARGDFLVFLASDDLLLPDSIRARLLVLLNHPDALAIFADATAIDDDGRQIAKSVLRERFHADVAALSSDR
RRALELILNWSVPGPVFMARRVAFDTVGKYDERFFIEDRDYYLRLLADQTLLYLDQPVAAYRMHGTSISGNKLRQIRIGQ
EIMRIEHKLLPAFTGSAKLALQLRIWSNTSAIYTSSIWCKPFTAVRCAMARLIATCMLLAVRADLIYWAPAK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=105, Percent_Identity=36.1904761904762, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 35392; Mature: 35261

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSILQNHTAPLVSVLIPIFNHARFIEKCLDSLLSTGWAHLELIAIDDGSSDESLSIARTW
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHH
AQRHESSFVRIDLSTQQNQGITRTLNRLIERARGDFLVFLASDDLLLPDSIRARLLVLLN
HHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCEECCCHHCEEEEEEEE
HPDALAIFADATAIDDDGRQIAKSVLRERFHADVAALSSDRRRALELILNWSVPGPVFMA
CCCEEEEEECCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHH
RRVAFDTVGKYDERFFIEDRDYYLRLLADQTLLYLDQPVAAYRMHGTSISGNKLRQIRIG
HHHHHHHHCCCCCEEEEECCHHHHHHHHCCEEEEECCCHHHHEECCCCCCCCCEEEHHHH
QEIMRIEHKLLPAFTGSAKLALQLRIWSNTSAIYTSSIWCKPFTAVRCAMARLIATCMLL
HHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
AVRADLIYWAPAK
HHHHHHEEECCCC
>Mature Secondary Structure 
SILQNHTAPLVSVLIPIFNHARFIEKCLDSLLSTGWAHLELIAIDDGSSDESLSIARTW
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHH
AQRHESSFVRIDLSTQQNQGITRTLNRLIERARGDFLVFLASDDLLLPDSIRARLLVLLN
HHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCEECCCHHCEEEEEEEE
HPDALAIFADATAIDDDGRQIAKSVLRERFHADVAALSSDRRRALELILNWSVPGPVFMA
CCCEEEEEECCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHH
RRVAFDTVGKYDERFFIEDRDYYLRLLADQTLLYLDQPVAAYRMHGTSISGNKLRQIRIG
HHHHHHHHCCCCCEEEEECCHHHHHHHHCCEEEEECCCHHHHEECCCCCCCCCEEEHHHH
QEIMRIEHKLLPAFTGSAKLALQLRIWSNTSAIYTSSIWCKPFTAVRCAMARLIATCMLL
HHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
AVRADLIYWAPAK
HHHHHHEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA