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The map label for this gene is hofQ [C]

Identifier: 187927687

GI number: 187927687

Start: 625410

End: 627401

Strand: Reverse

Name: hofQ [C]

Synonym: Rpic_0591

Alternate gene names: 187927687

Gene position: 627401-625410 (Counterclockwise)

Preceding gene: 187927688

Following gene: 187927686

Centisome position: 15.91

GC content: 65.11

Gene sequence:

>1992_bases
ATGAAGACGAACCAAAAAACCAATGGCGCCAACGTCACGCTACGTGGCGTACAGGTCCTCGGCAGCACACGCATGCTCAT
TCTGGCGAGTGCCGCCGGTGCCATGCTCTGCATGCCTACGCATGCGACAGCACAAGCGGCCATGGAGGCAGGCGCCGTAG
CCAAGTCCACCACAGCACCGGTCGTGATGCAGTCTCGCGCCGGTGCATCCGCACCGGTGCAGATGACGATCAGCATGAAC
CCGGCGCTGGCGACCGCACCGGTGGCCGATGTACGCGGGCCGAACTGCACGGGCGCCGTGCGCGGCGAAAGCAGCGTGGT
GGTGCCGGTTGGCAAGTCTTCGCTCATCTCGCTGCCGGAGCCCGTGCGCAATCGCACGCTGGGCAATCCGGCTGTGGTGC
AGGCCACCATGGTGTCGCCGCAATCCATGTATCTGCTGGGCCGCAGTGTGGGCACCACCAACATGATCGTGCAGGGGCGC
AGCGGCGCCTGCAGCATCGTCAATGTGGTAGTTAACGCCGATGCCGGTGGCCTGCAGACTTCGCTCGCGCAGCTGATGCC
GGGTGAAAACAAGATTCGCGTGATGACCGCGGCAGACAGCCTTGTACTGGCCGGCAACGTGTCGAGCGCACAGGCGGCGC
AGCAAGCCATGGAAATCGCCCACGCCTATGCAGCTTCTGCACAAAGCGGTGCGGACAAGGGCGGCGGTGCGGCAGGTGCA
CTCGGCGGTGGTGGTGCCGCCGGCGGTGCCAACGTCATCAACATGATGATCGTGGATACACCGCAGCAGGTCATGCTGGA
AGTCAAGGTGGCGGAAGTGTCGAAGACCCTATTGAACCAGCTGGGCTCGGCACTCAATGTCCAAGGCGGATTCGGCTCGT
GGAGCGGCGGCCTCCTGACCTCCCTGTTGACCGGCTCGTCTACCGGGTTCTTTGCCAACAAGGCGAACAACCGGCCCTTC
CAGGTTGAGTTGGATGCGCAAAAGAACGACAGCCTGGTGAAGATCCTTGCCGAGCCGAATCTCGTCACGCTCAGTGGCCA
GGAAGCCAGCTTCCTGGCAGGCGGCAAGATCTACATCCCGGTTGCGCAGAGCAGCAGCTCAGGTGGCGCTCCCACCATCA
CGCTGCAAGAGGAGGAGTATGGCGTTGGCCTGAAGTTCACGCCAACCGTAATGGCCAATGGCCGCATCAACCTCAAGGTG
GCACCGGAGGTATCGGAACTTTCGCCCACGGGCGCAACTGTCACCGGTGCCAACACGAACGGCCAGACCATCCTGCCGCT
CATCACCACGCGGCGCGCCTCCACCACCGTGCAGATGCGTGACGGAGAGAGCTTTGCCATCGGTGGGCTGCTGCAAGACA
ACGCGCGCGGCTCACTGAAGGCATTGCCCGGCGCGGGTGAAATCCCCGTCCTGGGCACCCTCTTCCGCAGCACGCAGTTC
CAGCATGACCTGACGGAGCTGGTCATCGTCATCACGCCGCGCCTGGTGCAGCCAATGCAGACGGCCTCGTATCCGCTGCC
GACTGACAGCTTCTCGACGCCCAACGAGCTTGCCGTCTACCTGACGGGCAACATGGAAGGCTCCGGCGCCAAGAACCGCG
CGGCCAAACCAGCAACGGCCGCCGCACCTGCAACGGCACCGCAGGTACCTGCGCAGGTACCGAGCGCACCCGCTGCCCCC
AGCTCGCAGGCGCCGATGCCGGCTCCGGTTGCGCCCGCACCGGTCGCTCCGGTCATCCCTGCACCACGCACTGAGGTGAG
CATCGCCCCGCCCACGCAGCCGGCAAACGGTGCGCCCGAAAAACCGGCGGCCGCGCAACCGGTTTGGGAAACCGCGCCCG
TTACAACATCGGCCACGGCGCCCACGGACGACAATGCCGCGCGTGTTGCCCGAATCGAAGCCACTGCGGCACGGCTGGCC
CAGGCCAGAACCAAGACGCAGGGCCGGCAGACGGCAGTGGCCGACACGACCACAACCCCGCAGACACGCTAA

Upstream 100 bases:

>100_bases
ACAGTCCTTCAACACAACACGTAGCGCAAGTCGAGGTTAACCAGCCACAGCGTATCAACCGCATTTTTACCTTGTGCAGC
AGACCCTCGGGGGGGGAGAT

Downstream 100 bases:

>100_bases
CCCGGGAACCATGTGGAGATATGCCATGAACACCAATCTTAAATACCTGCAACGCGCCGCACTCGTGATCCTGGCTTGCC
AGGCCCTGACTGCCTGCATG

Product: type II and III secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 663; Mature: 663

Protein sequence:

>663_residues
MKTNQKTNGANVTLRGVQVLGSTRMLILASAAGAMLCMPTHATAQAAMEAGAVAKSTTAPVVMQSRAGASAPVQMTISMN
PALATAPVADVRGPNCTGAVRGESSVVVPVGKSSLISLPEPVRNRTLGNPAVVQATMVSPQSMYLLGRSVGTTNMIVQGR
SGACSIVNVVVNADAGGLQTSLAQLMPGENKIRVMTAADSLVLAGNVSSAQAAQQAMEIAHAYAASAQSGADKGGGAAGA
LGGGGAAGGANVINMMIVDTPQQVMLEVKVAEVSKTLLNQLGSALNVQGGFGSWSGGLLTSLLTGSSTGFFANKANNRPF
QVELDAQKNDSLVKILAEPNLVTLSGQEASFLAGGKIYIPVAQSSSSGGAPTITLQEEEYGVGLKFTPTVMANGRINLKV
APEVSELSPTGATVTGANTNGQTILPLITTRRASTTVQMRDGESFAIGGLLQDNARGSLKALPGAGEIPVLGTLFRSTQF
QHDLTELVIVITPRLVQPMQTASYPLPTDSFSTPNELAVYLTGNMEGSGAKNRAAKPATAAAPATAPQVPAQVPSAPAAP
SSQAPMPAPVAPAPVAPVIPAPRTEVSIAPPTQPANGAPEKPAAAQPVWETAPVTTSATAPTDDNAARVARIEATAARLA
QARTKTQGRQTAVADTTTTPQTR

Sequences:

>Translated_663_residues
MKTNQKTNGANVTLRGVQVLGSTRMLILASAAGAMLCMPTHATAQAAMEAGAVAKSTTAPVVMQSRAGASAPVQMTISMN
PALATAPVADVRGPNCTGAVRGESSVVVPVGKSSLISLPEPVRNRTLGNPAVVQATMVSPQSMYLLGRSVGTTNMIVQGR
SGACSIVNVVVNADAGGLQTSLAQLMPGENKIRVMTAADSLVLAGNVSSAQAAQQAMEIAHAYAASAQSGADKGGGAAGA
LGGGGAAGGANVINMMIVDTPQQVMLEVKVAEVSKTLLNQLGSALNVQGGFGSWSGGLLTSLLTGSSTGFFANKANNRPF
QVELDAQKNDSLVKILAEPNLVTLSGQEASFLAGGKIYIPVAQSSSSGGAPTITLQEEEYGVGLKFTPTVMANGRINLKV
APEVSELSPTGATVTGANTNGQTILPLITTRRASTTVQMRDGESFAIGGLLQDNARGSLKALPGAGEIPVLGTLFRSTQF
QHDLTELVIVITPRLVQPMQTASYPLPTDSFSTPNELAVYLTGNMEGSGAKNRAAKPATAAAPATAPQVPAQVPSAPAAP
SSQAPMPAPVAPAPVAPVIPAPRTEVSIAPPTQPANGAPEKPAAAQPVWETAPVTTSATAPTDDNAARVARIEATAARLA
QARTKTQGRQTAVADTTTTPQTR
>Mature_663_residues
MKTNQKTNGANVTLRGVQVLGSTRMLILASAAGAMLCMPTHATAQAAMEAGAVAKSTTAPVVMQSRAGASAPVQMTISMN
PALATAPVADVRGPNCTGAVRGESSVVVPVGKSSLISLPEPVRNRTLGNPAVVQATMVSPQSMYLLGRSVGTTNMIVQGR
SGACSIVNVVVNADAGGLQTSLAQLMPGENKIRVMTAADSLVLAGNVSSAQAAQQAMEIAHAYAASAQSGADKGGGAAGA
LGGGGAAGGANVINMMIVDTPQQVMLEVKVAEVSKTLLNQLGSALNVQGGFGSWSGGLLTSLLTGSSTGFFANKANNRPF
QVELDAQKNDSLVKILAEPNLVTLSGQEASFLAGGKIYIPVAQSSSSGGAPTITLQEEEYGVGLKFTPTVMANGRINLKV
APEVSELSPTGATVTGANTNGQTILPLITTRRASTTVQMRDGESFAIGGLLQDNARGSLKALPGAGEIPVLGTLFRSTQF
QHDLTELVIVITPRLVQPMQTASYPLPTDSFSTPNELAVYLTGNMEGSGAKNRAAKPATAAAPATAPQVPAQVPSAPAAP
SSQAPMPAPVAPAPVAPVIPAPRTEVSIAPPTQPANGAPEKPAAAQPVWETAPVTTSATAPTDDNAARVARIEATAARLA
QARTKTQGRQTAVADTTTTPQTR

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

Organism=Escherichia coli, GI1789793, Length=191, Percent_Identity=32.4607329842932, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI87082242, Length=205, Percent_Identity=28.2926829268293, Blast_Score=73, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 67115; Mature: 67115

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTNQKTNGANVTLRGVQVLGSTRMLILASAAGAMLCMPTHATAQAAMEAGAVAKSTTAP
CCCCCCCCCCEEEEEEEEEECCCEEEEEEECCCCEEEECCCHHHHHHHHHCCCCCCCCCC
VVMQSRAGASAPVQMTISMNPALATAPVADVRGPNCTGAVRGESSVVVPVGKSSLISLPE
EEEECCCCCCCCEEEEEEECCCEEECCHHHCCCCCCCEEECCCCEEEEECCCCCCCCCCC
PVRNRTLGNPAVVQATMVSPQSMYLLGRSVGTTNMIVQGRSGACSIVNVVVNADAGGLQT
HHHHCCCCCCCEEEEEEECCCEEEEEECCCCCCEEEEECCCCCEEEEEEEEECCCCCHHH
SLAQLMPGENKIRVMTAADSLVLAGNVSSAQAAQQAMEIAHAYAASAQSGADKGGGAAGA
HHHHHCCCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
LGGGGAAGGANVINMMIVDTPQQVMLEVKVAEVSKTLLNQLGSALNVQGGFGSWSGGLLT
CCCCCCCCCCEEEEEEEECCCHHHEEEEHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHH
SLLTGSSTGFFANKANNRPFQVELDAQKNDSLVKILAEPNLVTLSGQEASFLAGGKIYIP
HHHCCCCCCEEEECCCCCCEEEEECCCCCCCEEEEEECCCEEEECCCCCEEEECCEEEEE
VAQSSSSGGAPTITLQEEEYGVGLKFTPTVMANGRINLKVAPEVSELSPTGATVTGANTN
EECCCCCCCCCEEEEECHHCCCCEEECCEEEECCEEEEEECCCHHHCCCCCCEEECCCCC
GQTILPLITTRRASTTVQMRDGESFAIGGLLQDNARGSLKALPGAGEIPVLGTLFRSTQF
CCEEEEEEEECCCCEEEEEECCCEEEECCEEECCCCCCEEECCCCCCCCHHHHHHHHCCH
QHDLTELVIVITPRLVQPMQTASYPLPTDSFSTPNELAVYLTGNMEGSGAKNRAAKPATA
HHHHHEEEEEECCHHHCHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
AAPATAPQVPAQVPSAPAAPSSQAPMPAPVAPAPVAPVIPAPRTEVSIAPPTQPANGAPE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
KPAAAQPVWETAPVTTSATAPTDDNAARVARIEATAARLAQARTKTQGRQTAVADTTTTP
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEEEECCCCC
QTR
CCC
>Mature Secondary Structure
MKTNQKTNGANVTLRGVQVLGSTRMLILASAAGAMLCMPTHATAQAAMEAGAVAKSTTAP
CCCCCCCCCCEEEEEEEEEECCCEEEEEEECCCCEEEECCCHHHHHHHHHCCCCCCCCCC
VVMQSRAGASAPVQMTISMNPALATAPVADVRGPNCTGAVRGESSVVVPVGKSSLISLPE
EEEECCCCCCCCEEEEEEECCCEEECCHHHCCCCCCCEEECCCCEEEEECCCCCCCCCCC
PVRNRTLGNPAVVQATMVSPQSMYLLGRSVGTTNMIVQGRSGACSIVNVVVNADAGGLQT
HHHHCCCCCCCEEEEEEECCCEEEEEECCCCCCEEEEECCCCCEEEEEEEEECCCCCHHH
SLAQLMPGENKIRVMTAADSLVLAGNVSSAQAAQQAMEIAHAYAASAQSGADKGGGAAGA
HHHHHCCCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
LGGGGAAGGANVINMMIVDTPQQVMLEVKVAEVSKTLLNQLGSALNVQGGFGSWSGGLLT
CCCCCCCCCCEEEEEEEECCCHHHEEEEHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHH
SLLTGSSTGFFANKANNRPFQVELDAQKNDSLVKILAEPNLVTLSGQEASFLAGGKIYIP
HHHCCCCCCEEEECCCCCCEEEEECCCCCCCEEEEEECCCEEEECCCCCEEEECCEEEEE
VAQSSSSGGAPTITLQEEEYGVGLKFTPTVMANGRINLKVAPEVSELSPTGATVTGANTN
EECCCCCCCCCEEEEECHHCCCCEEECCEEEECCEEEEEECCCHHHCCCCCCEEECCCCC
GQTILPLITTRRASTTVQMRDGESFAIGGLLQDNARGSLKALPGAGEIPVLGTLFRSTQF
CCEEEEEEEECCCCEEEEEECCCEEEECCEEECCCCCCEEECCCCCCCCHHHHHHHHCCH
QHDLTELVIVITPRLVQPMQTASYPLPTDSFSTPNELAVYLTGNMEGSGAKNRAAKPATA
HHHHHEEEEEECCHHHCHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
AAPATAPQVPAQVPSAPAAPSSQAPMPAPVAPAPVAPVIPAPRTEVSIAPPTQPANGAPE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
KPAAAQPVWETAPVTTSATAPTDDNAARVARIEATAARLAQARTKTQGRQTAVADTTTTP
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEEEECCCCC
QTR
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]