Click here to switch to the map view.

The map label for this gene is ompW [H]

Identifier: 187927514

GI number: 187927514

Start: 437812

End: 438738

Strand: Reverse

Name: ompW [H]

Synonym: Rpic_0411

Alternate gene names: 187927514

Gene position: 438738-437812 (Counterclockwise)

Preceding gene: 187927515

Following gene: 187927513

Centisome position: 11.13

GC content: 63.75

Gene sequence:

>927_bases
ATGAACCGCACCGCCCGCCGCCTTGCTGCAGCCATTGCCTGCGCCGCCGCCAGCACCCTTGCTGCCCCCCTGGCTCACGC
CCAATCCACCGCAGAGGCCAACGTGGCCGCAAGCGCCAGCAATGGCAGTGGCATGAGCAGCGGTGGCGGTGGCGGCTTCA
GCGGCTTCATGGACAACTACGTCTGGGGCCGCAACGTCATGGCGCTGGGCTGGTTCTACATCCGCCCGATGGATTCGGCC
ACGCCGCTGACCACCACCACCAGCGCGCTGGGCCTGGGCACCTACCAGTCGCCAGGAACTGACGTGAAAGTCAGTAACGC
CAATACGCTGTCGCTCACGTTCACGCACTTCTTTAACGACAACATCGCCGGTACGTTCGTGGGTGGCGTTCCGCCCAAGT
TCAACCTGTACGGCAGCGGCAATGTGATCGCGCCGGTGCCGGTGGTCGGGCCGCTGACGCTAGTCAACCTGGGCCTGCCG
CAAAACAACCCGGTCGCCACCGTGCGTGAATGGAGCCCGGCGATCGTCGCGCAGTACTACTTCGGCACCAAGGAAAGCAA
GCTGCGCCCGTTCGTCGGCGCAGGCGTCAGCTACAACTTCTTCACCAACCTGAAACTGAACCAGAACTTCGTCAACGGCC
TGCAGAACCTGGGGCAGGTGCTGCAGCTGGGCATGGGCCAGGTTCCGACTGGCCCGGCCAAGGTGACGGCGGAAACGTCC
AGCTCGTGGACGCCGGTGGCCAACGTAGGCGTCTCGTATGAGTTCGCCAAGAACTGGACCGCCATCGGCACGGTGTCTTA
CCTGCCGCTGAAGACGACCTCCACCATCACGATCCGCAGCCAGCAAGGCCAGGTGCTGGCGGTCAACAAGACCGACATCA
AGGTCGACCCGATCGTGTTCGGCTTGGCTGTGGGCTACAAGTTCTAA

Upstream 100 bases:

>100_bases
GTCATCGCAGCGCAACCGAACAAAAGCGCTGCGCTATGCTGCGGAAACACAAATCGCCACACCAAGGCGTGATAACAATC
CAATCCAGAGAGACAACCAC

Downstream 100 bases:

>100_bases
GCCGCACAATTGCTCCATCGCAAGACGCCACCTCCGGGTGGCGTTTTTCATTGGGGCGCGACCCGATATCATGGCGGACT
ACTACGACGCGCCGTTTGAC

Product: OmpW family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MNRTARRLAAAIACAAASTLAAPLAHAQSTAEANVAASASNGSGMSSGGGGGFSGFMDNYVWGRNVMALGWFYIRPMDSA
TPLTTTTSALGLGTYQSPGTDVKVSNANTLSLTFTHFFNDNIAGTFVGGVPPKFNLYGSGNVIAPVPVVGPLTLVNLGLP
QNNPVATVREWSPAIVAQYYFGTKESKLRPFVGAGVSYNFFTNLKLNQNFVNGLQNLGQVLQLGMGQVPTGPAKVTAETS
SSWTPVANVGVSYEFAKNWTAIGTVSYLPLKTTSTITIRSQQGQVLAVNKTDIKVDPIVFGLAVGYKF

Sequences:

>Translated_308_residues
MNRTARRLAAAIACAAASTLAAPLAHAQSTAEANVAASASNGSGMSSGGGGGFSGFMDNYVWGRNVMALGWFYIRPMDSA
TPLTTTTSALGLGTYQSPGTDVKVSNANTLSLTFTHFFNDNIAGTFVGGVPPKFNLYGSGNVIAPVPVVGPLTLVNLGLP
QNNPVATVREWSPAIVAQYYFGTKESKLRPFVGAGVSYNFFTNLKLNQNFVNGLQNLGQVLQLGMGQVPTGPAKVTAETS
SSWTPVANVGVSYEFAKNWTAIGTVSYLPLKTTSTITIRSQQGQVLAVNKTDIKVDPIVFGLAVGYKF
>Mature_308_residues
MNRTARRLAAAIACAAASTLAAPLAHAQSTAEANVAASASNGSGMSSGGGGGFSGFMDNYVWGRNVMALGWFYIRPMDSA
TPLTTTTSALGLGTYQSPGTDVKVSNANTLSLTFTHFFNDNIAGTFVGGVPPKFNLYGSGNVIAPVPVVGPLTLVNLGLP
QNNPVATVREWSPAIVAQYYFGTKESKLRPFVGAGVSYNFFTNLKLNQNFVNGLQNLGQVLQLGMGQVPTGPAKVTAETS
SSWTPVANVGVSYEFAKNWTAIGTVSYLPLKTTSTITIRSQQGQVLAVNKTDIKVDPIVFGLAVGYKF

Specific function: Acts as a receptor for colicin S4 [H]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=205, Percent_Identity=26.8292682926829, Blast_Score=80, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 32262; Mature: 32262

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRTARRLAAAIACAAASTLAAPLAHAQSTAEANVAASASNGSGMSSGGGGGFSGFMDNY
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCC
VWGRNVMALGWFYIRPMDSATPLTTTTSALGLGTYQSPGTDVKVSNANTLSLTFTHFFND
CCCCCEEEEEEEEEEECCCCCCCEECCHHHCCCCCCCCCCEEEECCCCEEEEEEEEEECC
NIAGTFVGGVPPKFNLYGSGNVIAPVPVVGPLTLVNLGLPQNNPVATVREWSPAIVAQYY
CCCEEEECCCCCCEEEEECCCEEECCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEEE
FGTKESKLRPFVGAGVSYNFFTNLKLNQNFVNGLQNLGQVLQLGMGQVPTGPAKVTAETS
CCCCCCCCCCEEECCCEEEEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCC
SSWTPVANVGVSYEFAKNWTAIGTVSYLPLKTTSTITIRSQQGQVLAVNKTDIKVDPIVF
CCCCCHHHCCEEEEHHCCCEEEEEEEEEEECCCEEEEEECCCCCEEEEECCCEEECCEEE
GLAVGYKF
EEEECCCC
>Mature Secondary Structure
MNRTARRLAAAIACAAASTLAAPLAHAQSTAEANVAASASNGSGMSSGGGGGFSGFMDNY
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHCC
VWGRNVMALGWFYIRPMDSATPLTTTTSALGLGTYQSPGTDVKVSNANTLSLTFTHFFND
CCCCCEEEEEEEEEEECCCCCCCEECCHHHCCCCCCCCCCEEEECCCCEEEEEEEEEECC
NIAGTFVGGVPPKFNLYGSGNVIAPVPVVGPLTLVNLGLPQNNPVATVREWSPAIVAQYY
CCCEEEECCCCCCEEEEECCCEEECCCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEEE
FGTKESKLRPFVGAGVSYNFFTNLKLNQNFVNGLQNLGQVLQLGMGQVPTGPAKVTAETS
CCCCCCCCCCEEECCCEEEEEEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCC
SSWTPVANVGVSYEFAKNWTAIGTVSYLPLKTTSTITIRSQQGQVLAVNKTDIKVDPIVF
CCCCCHHHCCEEEEHHCCCEEEEEEEEEEECCCEEEEEECCCCCEEEEECCCEEECCEEE
GLAVGYKF
EEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3058546; 9097039; 9278503; 9629924; 10348872 [H]