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The map label for this gene is ydeD [C]

Identifier: 187927498

GI number: 187927498

Start: 421022

End: 421927

Strand: Reverse

Name: ydeD [C]

Synonym: Rpic_0395

Alternate gene names: 187927498

Gene position: 421927-421022 (Counterclockwise)

Preceding gene: 187927499

Following gene: 187927493

Centisome position: 10.7

GC content: 66.89

Gene sequence:

>906_bases
ATGGCAACCGCCACTGACGCCATCCGCCGGCCGCTGGACGGCACTGCCATCGGCCTGATGGTGGTGCTGTGCATGTGCTG
GGGCTTTCAGCAGGTTGCCATCAAGGTGGCCGCGCACGACGTGGGGCCCGTCATGCAGGCCGGTGTGCGCTCGGCAATCG
CGTCGGTCCTGGTACTGGCGTTTGCGCTGTGGCGCGGCACGTGCCTGTCGGTGCGTGACGGCACATTGGCCGGTGGTCTG
ATGGCCGGTGTGCTCTTCGGGGTCGAGTTCCTGTGCATCTTCATTGGCCTGAGCTACACCACTGCCTCGCGCATGGCGGT
GTTCCTTTACACCGCGCCGATCTTCACCGCCCTCGGCCTGCACTTTTTCGTGCCGGGTGAGCACCTGCGCCCGCGCCAGT
GGGCCGGGATCGGCATTGCGTTTGCGGGGATCGTGCTGGCGTTCGCCGACGGTGTCCTGCACCCGGCGGCCGGGCCGTCG
ACCTCGCTGGGCGACGCGCTGGGCGTGGTGGCAGGCGCGCTGTGGGGCGCGACGACCATCGTCGTGCGGGCAAGCAAGCT
TTCCGAAGCACCGGCAGCGAAGACGCTGCTGTACCAACTTGCCGTCTCGGCCGTGCTGTTGCTGTTGATGGCCGCCGGCA
CCGGCCAGGCCTTTACGGCAAACCTTACACCGACCGCGCTGGCCAGCCTCGCCTACCAATCCGTGCTGATTGCGTTCGCC
AGTTACCTGACGTGGTTCTGGCTGCTGCGCCGCTACCTGGCATCGCGGTTGTCGGTGTTCTCGTTCCTGACGCCGCTGTT
TGGCGTGGCGTTTGGCGTGCTGCTGTTGCACGAGCCGGTGGGACTGCGGTTTGCTCTGGCGGCGGCGCTCGTGCTGTCGG
GCATCCTGCTCGTCAATCTTCGCTAA

Upstream 100 bases:

>100_bases
CGTGAAGCGGGCCCGGTCAAGGGCGGCAGCACCATCATCGCGTTTGTGGAAGATCCGGATGGCTACAAGATCGAGCTGAT
CCAGGCGCGCTCGATGCCCG

Downstream 100 bases:

>100_bases
GGTCGGAGGCGCTGCCGGCAATGCGATTGGCCGGCAGTGCGTTCGCCACTGCCACGAAGTCTTCCACCGACACTTCTTCT
GCGCGCCGGCCCAGGTCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MATATDAIRRPLDGTAIGLMVVLCMCWGFQQVAIKVAAHDVGPVMQAGVRSAIASVLVLAFALWRGTCLSVRDGTLAGGL
MAGVLFGVEFLCIFIGLSYTTASRMAVFLYTAPIFTALGLHFFVPGEHLRPRQWAGIGIAFAGIVLAFADGVLHPAAGPS
TSLGDALGVVAGALWGATTIVVRASKLSEAPAAKTLLYQLAVSAVLLLLMAAGTGQAFTANLTPTALASLAYQSVLIAFA
SYLTWFWLLRRYLASRLSVFSFLTPLFGVAFGVLLLHEPVGLRFALAAALVLSGILLVNLR

Sequences:

>Translated_301_residues
MATATDAIRRPLDGTAIGLMVVLCMCWGFQQVAIKVAAHDVGPVMQAGVRSAIASVLVLAFALWRGTCLSVRDGTLAGGL
MAGVLFGVEFLCIFIGLSYTTASRMAVFLYTAPIFTALGLHFFVPGEHLRPRQWAGIGIAFAGIVLAFADGVLHPAAGPS
TSLGDALGVVAGALWGATTIVVRASKLSEAPAAKTLLYQLAVSAVLLLLMAAGTGQAFTANLTPTALASLAYQSVLIAFA
SYLTWFWLLRRYLASRLSVFSFLTPLFGVAFGVLLLHEPVGLRFALAAALVLSGILLVNLR
>Mature_300_residues
ATATDAIRRPLDGTAIGLMVVLCMCWGFQQVAIKVAAHDVGPVMQAGVRSAIASVLVLAFALWRGTCLSVRDGTLAGGLM
AGVLFGVEFLCIFIGLSYTTASRMAVFLYTAPIFTALGLHFFVPGEHLRPRQWAGIGIAFAGIVLAFADGVLHPAAGPST
SLGDALGVVAGALWGATTIVVRASKLSEAPAAKTLLYQLAVSAVLLLLMAAGTGQAFTANLTPTALASLAYQSVLIAFAS
YLTWFWLLRRYLASRLSVFSFLTPLFGVAFGVLLLHEPVGLRFALAAALVLSGILLVNLR

Specific function: Unknown

COG id: COG0697

COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 31513; Mature: 31382

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATATDAIRRPLDGTAIGLMVVLCMCWGFQQVAIKVAAHDVGPVMQAGVRSAIASVLVLA
CCCCCHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FALWRGTCLSVRDGTLAGGLMAGVLFGVEFLCIFIGLSYTTASRMAVFLYTAPIFTALGL
HHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HFFVPGEHLRPRQWAGIGIAFAGIVLAFADGVLHPAAGPSTSLGDALGVVAGALWGATTI
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VVRASKLSEAPAAKTLLYQLAVSAVLLLLMAAGTGQAFTANLTPTALASLAYQSVLIAFA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHH
SYLTWFWLLRRYLASRLSVFSFLTPLFGVAFGVLLLHEPVGLRFALAAALVLSGILLVNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEC
R
C
>Mature Secondary Structure 
ATATDAIRRPLDGTAIGLMVVLCMCWGFQQVAIKVAAHDVGPVMQAGVRSAIASVLVLA
CCCCHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FALWRGTCLSVRDGTLAGGLMAGVLFGVEFLCIFIGLSYTTASRMAVFLYTAPIFTALGL
HHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HFFVPGEHLRPRQWAGIGIAFAGIVLAFADGVLHPAAGPSTSLGDALGVVAGALWGATTI
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VVRASKLSEAPAAKTLLYQLAVSAVLLLLMAAGTGQAFTANLTPTALASLAYQSVLIAFA
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHH
SYLTWFWLLRRYLASRLSVFSFLTPLFGVAFGVLLLHEPVGLRFALAAALVLSGILLVNL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHEEC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]