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The map label for this gene is pcl [H]

Identifier: 187927412

GI number: 187927412

Start: 325713

End: 327410

Strand: Reverse

Name: pcl [H]

Synonym: Rpic_0308

Alternate gene names: 187927412

Gene position: 327410-325713 (Counterclockwise)

Preceding gene: 187927413

Following gene: 187927411

Centisome position: 8.3

GC content: 68.08

Gene sequence:

>1698_bases
ATGCCGACTTACCCGCTGGTCTCCCATCCAACGCTGGACAACACGCTTGCCTGGCGTGACGGCACGCCCGTCTCAGCGCG
CACGTTCCTGGCCGATGTGATGGCGCTGGCCGCGATGCTGCCGCCGGGCGGCCACGTGTTCAACGCCTGCGCAGACCGTT
ACCGCTTTGCCGTCGGGCTGGGCGCAGCGCTGGTGGCCGGCAAGGTCAGCCTGCTGCCGCCCATGCAGACGGCGCAGATG
GTGCGTCAGCTTTCGGCGTTCGCGCCCGATGTGTTCTGCCTGCACGATGCGACCGCCTGCCCGGTCGACCTGCCTGCCTT
CCGTTATCCCGATGCGTTGACGCCCGGCGCAGCGCCCATCGACGTGCCGCAGATCGACACGTCGCAAGTCATGGCGGTGT
TGTTCACGTCCGGCTCGACCGGTACGCCGGTGCCGCATCGCAAGACGTGGGGCGCACTGGCGCGCTGCATGCGCACGGCC
GTCGCGCACCTTGGCCTGGCCGATGGGCGCGCCTTCACGCTGGTCGGCACGGTGCCGGCACAGCACATGTACGGCCTTGA
GGTGACGGTGCTGTTGGCGCTGCAGGGGGGTCTGGCGTTCAGCAACCGGCAGCCGTTCTATCCGGCGGACATTCGCGAGG
CGTTGGACGCAGTACCGCAGCCGCGCGTGCTGGTGACCTCGCCGGTGCATCTGCGGGCGCTCCTCGCATCGGAGCCCGCG
TTGCCGAGTGCATCGCTCGTCCTGTCGGCCACAGCGCCGCTGTCGGAGGCGCTGGCGCGGAAGACCGAGACTCGCCTATC
CACGCCGCTCCTGGAAATCTACGGCAGCACCGAAACCGGCCAGGTCGCGACGCGCCGTACCGCGCAAGAAACCGCGTGGC
ACCTGTACCCCGGCGTTCGCATGGAATCGCGCTCCGGCACGCCGGAAGACGAAGGCCCGACGGTGTGGGTCTATGGCGGA
CACGTCGAAACCCCGGTACCGATGGGTGACGCGATCGAACTGATCGACGACACGCACTTTCTCCTGCACGGGCGCAAGGC
CGATCTGATCAACATTGCAGGCAAGCGGTCGTCGCTGGCGTATCTGAACCATCAACTCAACGCGATTGCCGGTGTGGTGG
ACGGCGTGTTCTACATGCCGGACGATGCGCCCGCCGCCCGGCATACGCACGGCAGCGCGGCAGTCACGCGCCTGGTGGCG
CTGGTTGTGGCGCCGGGCCTCAGCGCGGCGGATGTGCTGCGTGCCCTGCACGACCGCATCGACGCAGCATTTATGCCGCG
TCCACTGCTGCTGGTGGACGCGCTGCCGCGCAACGAAACCGGCAAACTGGCGCGCGATGTGCTGGCCGCGCTGATCGCGC
AGCATTCGCACCGCAACGCACACAAGCACGGCATGCGCTTCACCATTCCCGCTGATCACCCCGCGCTGCCGGGGCACTTT
CCTGGCCATCCGATCGTGCCGGGCGTGGTGCTGCTCGACCATGCGCTTCACACGATCGGTGCGGCGCTGGGCCGCTCGCT
TGATGCGTGCAAGATCAGCTCGGCCAAGTTTCTCAGTCCTGCGGCACCCGGGGAAGTGCTCGATCTCGCGTTCGAGACGA
CGCCAAGCAACGCCGTGCGCTTCACAATCCGCGCGGGCGAACGTGAAGTGGCCAGCGGCGTCCTGTCTGCCCCGGCACCG
GAGGGCGTTGCCGCATGA

Upstream 100 bases:

>100_bases
ACGCGGTGCGCGCGTATCGACAATCGGAACAATCCGGGCACGTCACGCCCGCTGCCACAGAACGGTCCCGCTGAACCCAC
CCGCCTGCAAGATTTGCTTC

Downstream 100 bases:

>100_bases
AGCGCTCCGACTGGGCCGAGCGTCCGGAGCGCAGCAACCTCGCGCTGCTGCGCCTGATGACGTGGCTCTCGCTGCGGCTC
GGGCGGCCGTTCGGCCGGGT

Product: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ

Products: NA

Alternate protein names: 4CL; 4-coumaroyl-CoA synthase [H]

Number of amino acids: Translated: 565; Mature: 564

Protein sequence:

>565_residues
MPTYPLVSHPTLDNTLAWRDGTPVSARTFLADVMALAAMLPPGGHVFNACADRYRFAVGLGAALVAGKVSLLPPMQTAQM
VRQLSAFAPDVFCLHDATACPVDLPAFRYPDALTPGAAPIDVPQIDTSQVMAVLFTSGSTGTPVPHRKTWGALARCMRTA
VAHLGLADGRAFTLVGTVPAQHMYGLEVTVLLALQGGLAFSNRQPFYPADIREALDAVPQPRVLVTSPVHLRALLASEPA
LPSASLVLSATAPLSEALARKTETRLSTPLLEIYGSTETGQVATRRTAQETAWHLYPGVRMESRSGTPEDEGPTVWVYGG
HVETPVPMGDAIELIDDTHFLLHGRKADLINIAGKRSSLAYLNHQLNAIAGVVDGVFYMPDDAPAARHTHGSAAVTRLVA
LVVAPGLSAADVLRALHDRIDAAFMPRPLLLVDALPRNETGKLARDVLAALIAQHSHRNAHKHGMRFTIPADHPALPGHF
PGHPIVPGVVLLDHALHTIGAALGRSLDACKISSAKFLSPAAPGEVLDLAFETTPSNAVRFTIRAGEREVASGVLSAPAP
EGVAA

Sequences:

>Translated_565_residues
MPTYPLVSHPTLDNTLAWRDGTPVSARTFLADVMALAAMLPPGGHVFNACADRYRFAVGLGAALVAGKVSLLPPMQTAQM
VRQLSAFAPDVFCLHDATACPVDLPAFRYPDALTPGAAPIDVPQIDTSQVMAVLFTSGSTGTPVPHRKTWGALARCMRTA
VAHLGLADGRAFTLVGTVPAQHMYGLEVTVLLALQGGLAFSNRQPFYPADIREALDAVPQPRVLVTSPVHLRALLASEPA
LPSASLVLSATAPLSEALARKTETRLSTPLLEIYGSTETGQVATRRTAQETAWHLYPGVRMESRSGTPEDEGPTVWVYGG
HVETPVPMGDAIELIDDTHFLLHGRKADLINIAGKRSSLAYLNHQLNAIAGVVDGVFYMPDDAPAARHTHGSAAVTRLVA
LVVAPGLSAADVLRALHDRIDAAFMPRPLLLVDALPRNETGKLARDVLAALIAQHSHRNAHKHGMRFTIPADHPALPGHF
PGHPIVPGVVLLDHALHTIGAALGRSLDACKISSAKFLSPAAPGEVLDLAFETTPSNAVRFTIRAGEREVASGVLSAPAP
EGVAA
>Mature_564_residues
PTYPLVSHPTLDNTLAWRDGTPVSARTFLADVMALAAMLPPGGHVFNACADRYRFAVGLGAALVAGKVSLLPPMQTAQMV
RQLSAFAPDVFCLHDATACPVDLPAFRYPDALTPGAAPIDVPQIDTSQVMAVLFTSGSTGTPVPHRKTWGALARCMRTAV
AHLGLADGRAFTLVGTVPAQHMYGLEVTVLLALQGGLAFSNRQPFYPADIREALDAVPQPRVLVTSPVHLRALLASEPAL
PSASLVLSATAPLSEALARKTETRLSTPLLEIYGSTETGQVATRRTAQETAWHLYPGVRMESRSGTPEDEGPTVWVYGGH
VETPVPMGDAIELIDDTHFLLHGRKADLINIAGKRSSLAYLNHQLNAIAGVVDGVFYMPDDAPAARHTHGSAAVTRLVAL
VVAPGLSAADVLRALHDRIDAAFMPRPLLLVDALPRNETGKLARDVLAALIAQHSHRNAHKHGMRFTIPADHPALPGHFP
GHPIVPGVVLLDHALHTIGAALGRSLDACKISSAKFLSPAAPGEVLDLAFETTPSNAVRFTIRAGEREVASGVLSAPAPE
GVAA

Specific function: Converts p-coumaric acid into p-coumaryl CoA. This is necessary for the activation of the photoactive yellow protein (PYP) chromophore [H]

COG id: COG0365

COG function: function code I; Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012743
- InterPro:   IPR020845
- InterPro:   IPR000873 [H]

Pfam domain/function: PF00501 AMP-binding [H]

EC number: =6.2.1.12 [H]

Molecular weight: Translated: 59692; Mature: 59561

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTYPLVSHPTLDNTLAWRDGTPVSARTFLADVMALAAMLPPGGHVFNACADRYRFAVGL
CCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
GAALVAGKVSLLPPMQTAQMVRQLSAFAPDVFCLHDATACPVDLPAFRYPDALTPGAAPI
HHHHHHCCHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
DVPQIDTSQVMAVLFTSGSTGTPVPHRKTWGALARCMRTAVAHLGLADGRAFTLVGTVPA
CCCCCCHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCH
QHMYGLEVTVLLALQGGLAFSNRQPFYPADIREALDAVPQPRVLVTSPVHLRALLASEPA
HHHCCCEEEEEEEECCCCEECCCCCCCCHHHHHHHHCCCCCCEEEECCHHHHHHHHCCCC
LPSASLVLSATAPLSEALARKTETRLSTPLLEIYGSTETGQVATRRTAQETAWHLYPGVR
CCCCEEEEEECCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHEEECCCCE
MESRSGTPEDEGPTVWVYGGHVETPVPMGDAIELIDDTHFLLHGRKADLINIAGKRSSLA
EECCCCCCCCCCCEEEEECCEECCCCCCCCHHHHHCCCEEEEECCCCCEEEECCCCCHHH
YLNHQLNAIAGVVDGVFYMPDDAPAARHTHGSAAVTRLVALVVAPGLSAADVLRALHDRI
HHHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
DAAFMPRPLLLVDALPRNETGKLARDVLAALIAQHSHRNAHKHGMRFTIPADHPALPGHF
HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCEEEECCCCCCCCCCC
PGHPIVPGVVLLDHALHTIGAALGRSLDACKISSAKFLSPAAPGEVLDLAFETTPSNAVR
CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEE
FTIRAGEREVASGVLSAPAPEGVAA
EEEECCCHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
PTYPLVSHPTLDNTLAWRDGTPVSARTFLADVMALAAMLPPGGHVFNACADRYRFAVGL
CCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
GAALVAGKVSLLPPMQTAQMVRQLSAFAPDVFCLHDATACPVDLPAFRYPDALTPGAAPI
HHHHHHCCHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC
DVPQIDTSQVMAVLFTSGSTGTPVPHRKTWGALARCMRTAVAHLGLADGRAFTLVGTVPA
CCCCCCHHHEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCH
QHMYGLEVTVLLALQGGLAFSNRQPFYPADIREALDAVPQPRVLVTSPVHLRALLASEPA
HHHCCCEEEEEEEECCCCEECCCCCCCCHHHHHHHHCCCCCCEEEECCHHHHHHHHCCCC
LPSASLVLSATAPLSEALARKTETRLSTPLLEIYGSTETGQVATRRTAQETAWHLYPGVR
CCCCEEEEEECCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHEEECCCCE
MESRSGTPEDEGPTVWVYGGHVETPVPMGDAIELIDDTHFLLHGRKADLINIAGKRSSLA
EECCCCCCCCCCCEEEEECCEECCCCCCCCHHHHHCCCEEEEECCCCCEEEECCCCCHHH
YLNHQLNAIAGVVDGVFYMPDDAPAARHTHGSAAVTRLVALVVAPGLSAADVLRALHDRI
HHHHHHHHHHHHHCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
DAAFMPRPLLLVDALPRNETGKLARDVLAALIAQHSHRNAHKHGMRFTIPADHPALPGHF
HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCEEEECCCCCCCCCCC
PGHPIVPGVVLLDHALHTIGAALGRSLDACKISSAKFLSPAAPGEVLDLAFETTPSNAVR
CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCEEEEEEECCCCCEEE
FTIRAGEREVASGVLSAPAPEGVAA
EEEECCCHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA