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The map label for this gene is nodB [H]

Identifier: 187927408

GI number: 187927408

Start: 320855

End: 321718

Strand: Reverse

Name: nodB [H]

Synonym: Rpic_0304

Alternate gene names: 187927408

Gene position: 321718-320855 (Counterclockwise)

Preceding gene: 187927409

Following gene: 187927407

Centisome position: 8.16

GC content: 69.33

Gene sequence:

>864_bases
ATGAACGCACCGATCACCCCGCCACTTGGCACCGCCCGACGCTGGAAGCCGAGCCCGCTGATCAGCGGCGCGCTGGCCCT
GCACGCTGGCGCAGCGGTTGCCGTTGCAGCAGATCCGTCGACATGGCCGTGGGCGGGCGGCGGCGTCATCGCCTCGCATC
TGGTGCTCATGGCCGGCGGACTATGGCCGCGCAGCACATGGCTCGGTCCCAACTGGACGCATCTGCCCGCCACGGCCGGC
CAGCGAATCGCAATGACCATCGACGACGGCCCTGACCCCGATGTCACGCCGCGCGTGCTGGACATACTGGACCAGTACGG
TGCCAAGGCCACCTTCTTCTGCATCGGCGAATTGGCGCAGCGGCACCCGCGCTGCGTCGAGGCCATCGTCGCGCGCGGGC
ACGCGGTGGAAAACCACAGTCAGCGCCACCGGCATACGTTCTCGCTGAAGGGGCCAGGCGCGTTGCGGCGCGAGATTGCT
GCCGCACAGGACACGCTCACGCAAATCACCGGCACGCGCCCGCTGTTCTTCCGCGCGCCGGCCGGACTGCGCAACCCGTT
TCTGGAGCCCGTGCTGTGCCAGCTTGGCCTGCAACTGGCGAGCTGGACGCGCCGCGGCTTCGATACCCGCTCGCGCAATC
CCGAAGCCGTCACCCAACGCCTGCTGCACGGTCTGGCGCCGCAAGACATCCTGCTGCTCCACGACGGCCATGCGGCGCGC
GATGCACACGGCGACCCCGTCCTGCTGACCGTATTGCCGAAGGTGCTCGAAACCGCCGCGCGCGCGCAATTGCAGTGCAC
GACGTTGCGCGCTGCCCTCGCGCCGGAGCCCGCGCAGGCCACGCGCTCGCAAATGACCATTTGA

Upstream 100 bases:

>100_bases
TCGAAACCTTCGGGCTGACCGTCGGCCCGGGCGCCATGCTTGCGCTGTTGTTCGCCGCCATCCTCGCGCCACGCGCCAAT
CACGATCAGCACGCCACAGC

Downstream 100 bases:

>100_bases
TAAAATTTGTTGACGATCGGCGCAGCAGCCTGCCGAATCCACCCCACCCCACAATTGCCGCGACATCGCCCCCAGTGAAG
CCCGTCCTGCTCACGCATTT

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: Nodulation protein B [H]

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MNAPITPPLGTARRWKPSPLISGALALHAGAAVAVAADPSTWPWAGGGVIASHLVLMAGGLWPRSTWLGPNWTHLPATAG
QRIAMTIDDGPDPDVTPRVLDILDQYGAKATFFCIGELAQRHPRCVEAIVARGHAVENHSQRHRHTFSLKGPGALRREIA
AAQDTLTQITGTRPLFFRAPAGLRNPFLEPVLCQLGLQLASWTRRGFDTRSRNPEAVTQRLLHGLAPQDILLLHDGHAAR
DAHGDPVLLTVLPKVLETAARAQLQCTTLRAALAPEPAQATRSQMTI

Sequences:

>Translated_287_residues
MNAPITPPLGTARRWKPSPLISGALALHAGAAVAVAADPSTWPWAGGGVIASHLVLMAGGLWPRSTWLGPNWTHLPATAG
QRIAMTIDDGPDPDVTPRVLDILDQYGAKATFFCIGELAQRHPRCVEAIVARGHAVENHSQRHRHTFSLKGPGALRREIA
AAQDTLTQITGTRPLFFRAPAGLRNPFLEPVLCQLGLQLASWTRRGFDTRSRNPEAVTQRLLHGLAPQDILLLHDGHAAR
DAHGDPVLLTVLPKVLETAARAQLQCTTLRAALAPEPAQATRSQMTI
>Mature_287_residues
MNAPITPPLGTARRWKPSPLISGALALHAGAAVAVAADPSTWPWAGGGVIASHLVLMAGGLWPRSTWLGPNWTHLPATAG
QRIAMTIDDGPDPDVTPRVLDILDQYGAKATFFCIGELAQRHPRCVEAIVARGHAVENHSQRHRHTFSLKGPGALRREIA
AAQDTLTQITGTRPLFFRAPAGLRNPFLEPVLCQLGLQLASWTRRGFDTRSRNPEAVTQRLLHGLAPQDILLLHDGHAAR
DAHGDPVLLTVLPKVLETAARAQLQCTTLRAALAPEPAQATRSQMTI

Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 30881; Mature: 30881

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPITPPLGTARRWKPSPLISGALALHAGAAVAVAADPSTWPWAGGGVIASHLVLMAGG
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
LWPRSTWLGPNWTHLPATAGQRIAMTIDDGPDPDVTPRVLDILDQYGAKATFFCIGELAQ
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEHHHHHHHH
RHPRCVEAIVARGHAVENHSQRHRHTFSLKGPGALRREIAAAQDTLTQITGTRPLFFRAP
HCHHHHHHHHHCCCHHHCCHHHHCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEECC
AGLRNPFLEPVLCQLGLQLASWTRRGFDTRSRNPEAVTQRLLHGLAPQDILLLHDGHAAR
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCC
DAHGDPVLLTVLPKVLETAARAQLQCTTLRAALAPEPAQATRSQMTI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure
MNAPITPPLGTARRWKPSPLISGALALHAGAAVAVAADPSTWPWAGGGVIASHLVLMAGG
CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCC
LWPRSTWLGPNWTHLPATAGQRIAMTIDDGPDPDVTPRVLDILDQYGAKATFFCIGELAQ
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEHHHHHHHH
RHPRCVEAIVARGHAVENHSQRHRHTFSLKGPGALRREIAAAQDTLTQITGTRPLFFRAP
HCHHHHHHHHHCCCHHHCCHHHHCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEECC
AGLRNPFLEPVLCQLGLQLASWTRRGFDTRSRNPEAVTQRLLHGLAPQDILLLHDGHAAR
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCC
DAHGDPVLLTVLPKVLETAARAQLQCTTLRAALAPEPAQATRSQMTI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 4006668; 6336331; 11481432 [H]