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The map label for this gene is secB [H]

Identifier: 187927320

GI number: 187927320

Start: 229120

End: 229638

Strand: Direct

Name: secB [H]

Synonym: Rpic_0212

Alternate gene names: 187927320

Gene position: 229120-229638 (Clockwise)

Preceding gene: 187927319

Following gene: 187927321

Centisome position: 5.81

GC content: 62.43

Gene sequence:

>519_bases
ATGAGCGACCAGCAACAGCAGCAACCGGGCCAGGATGGCCAGCCGTTCTTCAACATCCAGCGCGTCTATCTGAAGGACCT
GTCGCTGGAGCAACCGAACTCGCCGCACATCTTCCTCGAGCAGGAACAGCCGTCCGTGGAAGTGCAGGTCGACGTCGCCG
CTTCGCAACTGGCTGAAGGCGTGTTCGAAGTGACCGTCATCGGTACCGTGACGACCAAGGTGCAAGAGAAGGTGGCGTTC
CTGGTGGAAGCCAAGCAAGCTGGCATCTTCGATATCCGCAACGTGCCGGCCGAACAGATGGACCCGCTGCTGGGTATCGC
CTGCCCGACCATCGTGTACCCGTACCTGCGCTCGAACATTGCCGACACCATCGGCCGCGCCGGCTTCCAGCCGATCCACC
TGGCCGAGATCAACTTCCAGGCGCTGTACGAACAACGCCTGGCCGCTGCCATGGAGCAGCAAGGCCAAGCCGGTGGCACT
GGTCTGGTGATGCCGGACGGCTCGAAGGCCACCCACTAA

Upstream 100 bases:

>100_bases
CCGGCTCTCATAGCGGGCACCATCTGGTCATGTACCATACGCGTCTTGCGCGGCGGACGCTTCCGCCAAGCACTGTCCAC
ATCCTATTTGAAGGCGAGTC

Downstream 100 bases:

>100_bases
GTACGAGGCGCACTGCGCCAGAGGCCCGCGCCAGCCGCACGCTTGCGCGGGCTTTTTTTTGCCCGACCTGTTGCTCGACC
TTTGCCTGACCGATGTTGAA

Product: preprotein translocase subunit SecB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 171

Protein sequence:

>172_residues
MSDQQQQQPGQDGQPFFNIQRVYLKDLSLEQPNSPHIFLEQEQPSVEVQVDVAASQLAEGVFEVTVIGTVTTKVQEKVAF
LVEAKQAGIFDIRNVPAEQMDPLLGIACPTIVYPYLRSNIADTIGRAGFQPIHLAEINFQALYEQRLAAAMEQQGQAGGT
GLVMPDGSKATH

Sequences:

>Translated_172_residues
MSDQQQQQPGQDGQPFFNIQRVYLKDLSLEQPNSPHIFLEQEQPSVEVQVDVAASQLAEGVFEVTVIGTVTTKVQEKVAF
LVEAKQAGIFDIRNVPAEQMDPLLGIACPTIVYPYLRSNIADTIGRAGFQPIHLAEINFQALYEQRLAAAMEQQGQAGGT
GLVMPDGSKATH
>Mature_171_residues
SDQQQQQPGQDGQPFFNIQRVYLKDLSLEQPNSPHIFLEQEQPSVEVQVDVAASQLAEGVFEVTVIGTVTTKVQEKVAFL
VEAKQAGIFDIRNVPAEQMDPLLGIACPTIVYPYLRSNIADTIGRAGFQPIHLAEINFQALYEQRLAAAMEQQGQAGGTG
LVMPDGSKATH

Specific function: One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its r

COG id: COG1952

COG function: function code U; Preprotein translocase subunit SecB

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secB family [H]

Homologues:

Organism=Escherichia coli, GI1790038, Length=131, Percent_Identity=45.0381679389313, Blast_Score=126, Evalue=7e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003708 [H]

Pfam domain/function: PF02556 SecB [H]

EC number: NA

Molecular weight: Translated: 18809; Mature: 18677

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDQQQQQPGQDGQPFFNIQRVYLKDLSLEQPNSPHIFLEQEQPSVEVQVDVAASQLAEG
CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEHHHHHHHCC
VFEVTVIGTVTTKVQEKVAFLVEAKQAGIFDIRNVPAEQMDPLLGIACPTIVYPYLRSNI
CEEEEEEEHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHCHHHHHHHHHHHHHHHHHHH
ADTIGRAGFQPIHLAEINFQALYEQRLAAAMEQQGQAGGTGLVMPDGSKATH
HHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC
>Mature Secondary Structure 
SDQQQQQPGQDGQPFFNIQRVYLKDLSLEQPNSPHIFLEQEQPSVEVQVDVAASQLAEG
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCEEEEEEHHHHHHHCC
VFEVTVIGTVTTKVQEKVAFLVEAKQAGIFDIRNVPAEQMDPLLGIACPTIVYPYLRSNI
CEEEEEEEHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHCHHHHHHHHHHHHHHHHHHH
ADTIGRAGFQPIHLAEINFQALYEQRLAAAMEQQGQAGGTGLVMPDGSKATH
HHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852 [H]