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The map label for this gene is ctpA [H]

Identifier: 187927316

GI number: 187927316

Start: 225605

End: 227221

Strand: Reverse

Name: ctpA [H]

Synonym: Rpic_0208

Alternate gene names: 187927316

Gene position: 227221-225605 (Counterclockwise)

Preceding gene: 187927317

Following gene: 187927315

Centisome position: 5.76

GC content: 63.64

Gene sequence:

>1617_bases
ATGCGAACTTCGCTCAAGAACATCAGCTTGATCGCCATCGGCCTCGTCACCGGGGTCCTGGCGACGCTCCAGCTCTCCGC
CACCGCGCAAAACGCGACGGTCGGCCCGCTCCCGCTGGAAAAGCTCAGGCTCATGGCGGACATCTTTGGCCAAATCAAGC
GTGAATATGTCGAGCCGGTGGACGACGACAAGCTGCTGACCGAAGCCATCAAGGGCATGGTCGCCAGCCTCGACCCGCAT
TCGGCTTACCTGGATAAGAAGGACTTCCAGGAGCTGCAGGAAGGGACCCAAGGCCGCTTCGCCGGTCTGGGCATCGAGAT
CTCGCAGGAAGAAGGTCTGGTTAAGGTCATCAACCCGATCGAAGACACCCCCGCCTTCCGCGCCGGCGTGCAGCCGGGCG
ACCTGATCACCCGCATCGACGACAAGCCCGTGCGCGGCATGCCGCTGGAGCAAGCCGTCAAGCGCATGCGCGGTGCCCCG
GGCACGAAGGTCACGCTGACCATCTACCGCAAGAAGGAAGAGCGCACGTTCCCGCTGACCATCACTCGCGCCGAGATCCA
GGTGCAGTCGGTCAAGGCAAAGATGCTGGACAACGGCATTGCCTGGGTGCGCATTACCAGCTTCCAGGAACGCACTGTGC
CGGACCTGGCCAAGAAGCTCAATGACCTGGCGAAACAGGACCCCCACCTCAAGGGCCTGATCCTGGACCTGCGCAACAAC
GGCGGTGGCGTGCTGCAGGCAGCAGTTGGGGTGTCGGCTGCATTCCTGCCGCCGGACGCGACGGTGGTGTCGACCAACGG
CCAGGTGCCAGATGCCAAGCGCACGTACAAGGCGACCTTCGCAAACTACCGCTTGAGCAACTTGGATTCCGACCCTCTGG
TGGGCCTGGATCCCGAGTTCAAGACCGTGCCGATCATCGTGCTGACCAACGCCTACACGGCTTCGGCCTCAGAAATCGTG
GCCGGCGCGCTGCAGGATCATCACCGTGCCAAGACGATGGGCAAGACGACCTTCGGCAAGGGCTCGGTGCAGACGGTGCG
TCCGCTGTCGAACGACACCGGCATCAAGCTGACCATCGCCTACTACTACACGCCGTCGGGCAAGTCGATTCAGGCCAAGG
GCATCCGCCCGGATATTCCGGTTGACCAGAACCCGGACGGCGACCCGGACGACGCGCTGATCACGCGCGAAATCGACACC
GAACGCCACCTGCACAACAAGCAGGAATCGGAAGAAGCCGAGATGACCGAGCGCGAAAAGCGCCGCGTTGAAGAGCTGCG
TCGCCTGGAAGAAGAAAACGCCAAGAAGACGCCCGAGCAGCGCGAGAAGGAGCGCAACAAGAAGCCGATCGAGTTCGGTT
CGGCCGAAGATTTCATGCTCCAGCAAGCCCTTGCCGACCTGAAGGGTCAGCCGGTCAAGCGCTCGAAGTCGGTGCTGGAA
GCCGCGGCTGCCGCGGTGCCGGACAAGGCGGTGAAATCGCCGGCGGCCAAGGATTCTAGCGCCCCGGCCAAGCTGCCCAA
GGGCAAGGCCACACCGGCTTCCGAGCCGCCTGCACCGAAGCCCAATGTTCCGGCCAGCGGCGTGCAGCCTGCGCCGGAGC
CCACCGGCGCACGATAA

Upstream 100 bases:

>100_bases
GCACTCCAACGCCTTTATACTGTCGAAGCCTGTAGCCCGGGATGTGCGCGAGCCGTCCCGGGCCATGTTTATCTACTGTT
CCCACGTCCACGCTCGACAC

Downstream 100 bases:

>100_bases
GACACCTGCCGGCAAACACTGGCAAACTTACGAGGCCGTGCACTGCACGGCCTTTTTCATTGCACCACCATGAACGACGA
TCAACTGCTGCGCTACTCGC

Product: carboxyl-terminal protease

Products: NA

Alternate protein names: C-terminal-processing protease [H]

Number of amino acids: Translated: 538; Mature: 538

Protein sequence:

>538_residues
MRTSLKNISLIAIGLVTGVLATLQLSATAQNATVGPLPLEKLRLMADIFGQIKREYVEPVDDDKLLTEAIKGMVASLDPH
SAYLDKKDFQELQEGTQGRFAGLGIEISQEEGLVKVINPIEDTPAFRAGVQPGDLITRIDDKPVRGMPLEQAVKRMRGAP
GTKVTLTIYRKKEERTFPLTITRAEIQVQSVKAKMLDNGIAWVRITSFQERTVPDLAKKLNDLAKQDPHLKGLILDLRNN
GGGVLQAAVGVSAAFLPPDATVVSTNGQVPDAKRTYKATFANYRLSNLDSDPLVGLDPEFKTVPIIVLTNAYTASASEIV
AGALQDHHRAKTMGKTTFGKGSVQTVRPLSNDTGIKLTIAYYYTPSGKSIQAKGIRPDIPVDQNPDGDPDDALITREIDT
ERHLHNKQESEEAEMTEREKRRVEELRRLEEENAKKTPEQREKERNKKPIEFGSAEDFMLQQALADLKGQPVKRSKSVLE
AAAAAVPDKAVKSPAAKDSSAPAKLPKGKATPASEPPAPKPNVPASGVQPAPEPTGAR

Sequences:

>Translated_538_residues
MRTSLKNISLIAIGLVTGVLATLQLSATAQNATVGPLPLEKLRLMADIFGQIKREYVEPVDDDKLLTEAIKGMVASLDPH
SAYLDKKDFQELQEGTQGRFAGLGIEISQEEGLVKVINPIEDTPAFRAGVQPGDLITRIDDKPVRGMPLEQAVKRMRGAP
GTKVTLTIYRKKEERTFPLTITRAEIQVQSVKAKMLDNGIAWVRITSFQERTVPDLAKKLNDLAKQDPHLKGLILDLRNN
GGGVLQAAVGVSAAFLPPDATVVSTNGQVPDAKRTYKATFANYRLSNLDSDPLVGLDPEFKTVPIIVLTNAYTASASEIV
AGALQDHHRAKTMGKTTFGKGSVQTVRPLSNDTGIKLTIAYYYTPSGKSIQAKGIRPDIPVDQNPDGDPDDALITREIDT
ERHLHNKQESEEAEMTEREKRRVEELRRLEEENAKKTPEQREKERNKKPIEFGSAEDFMLQQALADLKGQPVKRSKSVLE
AAAAAVPDKAVKSPAAKDSSAPAKLPKGKATPASEPPAPKPNVPASGVQPAPEPTGAR
>Mature_538_residues
MRTSLKNISLIAIGLVTGVLATLQLSATAQNATVGPLPLEKLRLMADIFGQIKREYVEPVDDDKLLTEAIKGMVASLDPH
SAYLDKKDFQELQEGTQGRFAGLGIEISQEEGLVKVINPIEDTPAFRAGVQPGDLITRIDDKPVRGMPLEQAVKRMRGAP
GTKVTLTIYRKKEERTFPLTITRAEIQVQSVKAKMLDNGIAWVRITSFQERTVPDLAKKLNDLAKQDPHLKGLILDLRNN
GGGVLQAAVGVSAAFLPPDATVVSTNGQVPDAKRTYKATFANYRLSNLDSDPLVGLDPEFKTVPIIVLTNAYTASASEIV
AGALQDHHRAKTMGKTTFGKGSVQTVRPLSNDTGIKLTIAYYYTPSGKSIQAKGIRPDIPVDQNPDGDPDDALITREIDT
ERHLHNKQESEEAEMTEREKRRVEELRRLEEENAKKTPEQREKERNKKPIEFGSAEDFMLQQALADLKGQPVKRSKSVLE
AAAAAVPDKAVKSPAAKDSSAPAKLPKGKATPASEPPAPKPNVPASGVQPAPEPTGAR

Specific function: Involved in protection of the bacterium from thermal and osmotic stresses (Potential) [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=341, Percent_Identity=29.0322580645161, Blast_Score=119, Evalue=6e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 58476; Mature: 58476

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTSLKNISLIAIGLVTGVLATLQLSATAQNATVGPLPLEKLRLMADIFGQIKREYVEPV
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
DDDKLLTEAIKGMVASLDPHSAYLDKKDFQELQEGTQGRFAGLGIEISQEEGLVKVINPI
CCHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCCCCEEEECEEECCCCCEEEECCCC
EDTPAFRAGVQPGDLITRIDDKPVRGMPLEQAVKRMRGAPGTKVTLTIYRKKEERTFPLT
CCCCHHHCCCCCCHHEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEE
ITRAEIQVQSVKAKMLDNGIAWVRITSFQERTVPDLAKKLNDLAKQDPHLKGLILDLRNN
EEEHHHHHHHHHHHHHCCCEEEEEEECCHHCCHHHHHHHHHHHHHCCCCCEEEEEEEECC
GGGVLQAAVGVSAAFLPPDATVVSTNGQVPDAKRTYKATFANYRLSNLDSDPLVGLDPEF
CCCEEEHHHCCEEEECCCCCEEEECCCCCCCCHHHHHHHHHHCEECCCCCCCCCCCCCCC
KTVPIIVLTNAYTASASEIVAGALQDHHRAKTMGKTTFGKGSVQTVRPLSNDTGIKLTIA
CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCEEEEEE
YYYTPSGKSIQAKGIRPDIPVDQNPDGDPDDALITREIDTERHLHNKQESEEAEMTEREK
EEECCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHHHHHH
RRVEELRRLEEENAKKTPEQREKERNKKPIEFGSAEDFMLQQALADLKGQPVKRSKSVLE
HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
AAAAAVPDKAVKSPAAKDSSAPAKLPKGKATPASEPPAPKPNVPASGVQPAPEPTGAR
HHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRTSLKNISLIAIGLVTGVLATLQLSATAQNATVGPLPLEKLRLMADIFGQIKREYVEPV
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
DDDKLLTEAIKGMVASLDPHSAYLDKKDFQELQEGTQGRFAGLGIEISQEEGLVKVINPI
CCHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHCCCCCCEEEECEEECCCCCEEEECCCC
EDTPAFRAGVQPGDLITRIDDKPVRGMPLEQAVKRMRGAPGTKVTLTIYRKKEERTFPLT
CCCCHHHCCCCCCHHEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEE
ITRAEIQVQSVKAKMLDNGIAWVRITSFQERTVPDLAKKLNDLAKQDPHLKGLILDLRNN
EEEHHHHHHHHHHHHHCCCEEEEEEECCHHCCHHHHHHHHHHHHHCCCCCEEEEEEEECC
GGGVLQAAVGVSAAFLPPDATVVSTNGQVPDAKRTYKATFANYRLSNLDSDPLVGLDPEF
CCCEEEHHHCCEEEECCCCCEEEECCCCCCCCHHHHHHHHHHCEECCCCCCCCCCCCCCC
KTVPIIVLTNAYTASASEIVAGALQDHHRAKTMGKTTFGKGSVQTVRPLSNDTGIKLTIA
CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCEEEEEE
YYYTPSGKSIQAKGIRPDIPVDQNPDGDPDDALITREIDTERHLHNKQESEEAEMTEREK
EEECCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHHHHHH
RRVEELRRLEEENAKKTPEQREKERNKKPIEFGSAEDFMLQQALADLKGQPVKRSKSVLE
HHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
AAAAAVPDKAVKSPAAKDSSAPAKLPKGKATPASEPPAPKPNVPASGVQPAPEPTGAR
HHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141685 [H]