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The map label for this gene is 187927189

Identifier: 187927189

GI number: 187927189

Start: 90805

End: 91998

Strand: Reverse

Name: 187927189

Synonym: Rpic_0079

Alternate gene names: NA

Gene position: 91998-90805 (Counterclockwise)

Preceding gene: 187927190

Following gene: 187927188

Centisome position: 2.33

GC content: 67.17

Gene sequence:

>1194_bases
ATGCCCCGCAGTTACCTCCGCCCCTCGCCCGAAGGGGCCCACGGCCATCACCGCGTCACCAACATCGAGTTGTTCTTCGA
TCTGGTATTCGTGTTTGCGGTGACGCAGCTCTCGCACCTGCTGATCAGCAATTTCACGCTGCAAGGCGGCGCGCAGGCGC
TGCTGCTGATGCTGGCCGTGTGGTGGGTGTGGATCTTCACGTCGTGGGTGACGAACTGGCTCGATCCGGACAAGCTCGCC
ATCCGCATGCTGATGCTCGTGCTGATGACGGGCGGGCTGCTGCTCTCGGCATCGCTGCCGCAGGCGTTCGGCTCGCGCGG
GCTGGCCTTTGCGCTGGCCTATGTGTTCATGCAGTTCGGCCGCACGGTGTTCTTCATGTGGGCCGTGCGCGGCGAGTCGC
TGCCCATGCGGCGCAACTTCCAGCGCATCGCCACGTGGCTCGGCATCTCTGCAGTGCTGTGGCTGGCGGGCGGCCTGTCG
GACGGTTCCGCGCGCTGGGCGTGCTGGATCTTCGCGCTGGTCATCGAATGGCTCGGCCCCTCGATGGGCTTCTACACACC
GGGCCTGGGCCGCTCCACCACCAACGACTGGAACGTGGAAGGCGGCCACATGGCCGAGCGCTGCTCGCTGTTCATCATCA
TCGCGCTCGGCGAATCGGTGCTGGTGACGGGCTCCACGTTTGCTGGCCTCGCCTGGACCGCAGAAAACATCGCGGCGATG
GCGCTGTCGTTCATCGGCAGCCTGGCGATGTGGTGGCTGTATTTCGACAGGATTGCCGAGCGCGGCGCGCGCACCATGTC
GCATTCGGCTGATCCGGGCCGGCTCGCACGGCTGGCCTACACCTACATCCACGTGGTGCTGGTGGCCGGCATCATCGTCG
GGGCGGTGGCCGATGAGTTCGTGCTGGCGCATCCGGTGGGCCGCGCCCATGAAGGGACGACGCTGGCGGTGCTGGGCAGC
GCAGCGCTATATCTGCTGGGCAACCTGCTGTTCAAGTGGGCGATCTTCGGGCGGTTGCGCCCGGCACATGCGGTTGGCCT
AGTGGTGCTGGGCGGCGCCTGGCTGCCGGCGGGTGAACTGCCGGCGCTCGCGGTGTCCGCGCTGGCGACGGGCGTGCTGT
GCGGCACCGCGGCGTGGGAATGGTACGCACGCTCCTGCGAGACAGCGGAACCCGAAGCGGCACACAACCCGTAA

Upstream 100 bases:

>100_bases
GGCTACACGGGCGGTGCGGTGATGGTGGGCGCAGGCACGCTCACGCTCGGCATGCAGTCGGCCTGATCGCCCTTTCCAAG
GCCGCACCGAAGGACACCCG

Downstream 100 bases:

>100_bases
GTGGTTACCTGAAAATTCCAGTTTCTGGACATTACAAAAGGCCACTCGCGCGCCTACGCTGTCAACCAACATGACAGAAC
ACGAGGGCCTCGCCATGATC

Product: low temperature requirement A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 396

Protein sequence:

>397_residues
MPRSYLRPSPEGAHGHHRVTNIELFFDLVFVFAVTQLSHLLISNFTLQGGAQALLLMLAVWWVWIFTSWVTNWLDPDKLA
IRMLMLVLMTGGLLLSASLPQAFGSRGLAFALAYVFMQFGRTVFFMWAVRGESLPMRRNFQRIATWLGISAVLWLAGGLS
DGSARWACWIFALVIEWLGPSMGFYTPGLGRSTTNDWNVEGGHMAERCSLFIIIALGESVLVTGSTFAGLAWTAENIAAM
ALSFIGSLAMWWLYFDRIAERGARTMSHSADPGRLARLAYTYIHVVLVAGIIVGAVADEFVLAHPVGRAHEGTTLAVLGS
AALYLLGNLLFKWAIFGRLRPAHAVGLVVLGGAWLPAGELPALAVSALATGVLCGTAAWEWYARSCETAEPEAAHNP

Sequences:

>Translated_397_residues
MPRSYLRPSPEGAHGHHRVTNIELFFDLVFVFAVTQLSHLLISNFTLQGGAQALLLMLAVWWVWIFTSWVTNWLDPDKLA
IRMLMLVLMTGGLLLSASLPQAFGSRGLAFALAYVFMQFGRTVFFMWAVRGESLPMRRNFQRIATWLGISAVLWLAGGLS
DGSARWACWIFALVIEWLGPSMGFYTPGLGRSTTNDWNVEGGHMAERCSLFIIIALGESVLVTGSTFAGLAWTAENIAAM
ALSFIGSLAMWWLYFDRIAERGARTMSHSADPGRLARLAYTYIHVVLVAGIIVGAVADEFVLAHPVGRAHEGTTLAVLGS
AALYLLGNLLFKWAIFGRLRPAHAVGLVVLGGAWLPAGELPALAVSALATGVLCGTAAWEWYARSCETAEPEAAHNP
>Mature_396_residues
PRSYLRPSPEGAHGHHRVTNIELFFDLVFVFAVTQLSHLLISNFTLQGGAQALLLMLAVWWVWIFTSWVTNWLDPDKLAI
RMLMLVLMTGGLLLSASLPQAFGSRGLAFALAYVFMQFGRTVFFMWAVRGESLPMRRNFQRIATWLGISAVLWLAGGLSD
GSARWACWIFALVIEWLGPSMGFYTPGLGRSTTNDWNVEGGHMAERCSLFIIIALGESVLVTGSTFAGLAWTAENIAAMA
LSFIGSLAMWWLYFDRIAERGARTMSHSADPGRLARLAYTYIHVVLVAGIIVGAVADEFVLAHPVGRAHEGTTLAVLGSA
ALYLLGNLLFKWAIFGRLRPAHAVGLVVLGGAWLPAGELPALAVSALATGVLCGTAAWEWYARSCETAEPEAAHNP

Specific function: Unknown

COG id: COG4292

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010640 [H]

Pfam domain/function: PF06772 LtrA [H]

EC number: NA

Molecular weight: Translated: 43254; Mature: 43123

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRSYLRPSPEGAHGHHRVTNIELFFDLVFVFAVTQLSHLLISNFTLQGGAQALLLMLAV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
WWVWIFTSWVTNWLDPDKLAIRMLMLVLMTGGLLLSASLPQAFGSRGLAFALAYVFMQFG
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHEECCCCHHHCCCHHHHHHHHHHHHHC
RTVFFMWAVRGESLPMRRNFQRIATWLGISAVLWLAGGLSDGSARWACWIFALVIEWLGP
CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
SMGFYTPGLGRSTTNDWNVEGGHMAERCSLFIIIALGESVLVTGSTFAGLAWTAENIAAM
CCCCCCCCCCCCCCCCCCCCCCCHHHHHCEEEEEEECCEEEEECCCHHCHHHHHHHHHHH
ALSFIGSLAMWWLYFDRIAERGARTMSHSADPGRLARLAYTYIHVVLVAGIIVGAVADEF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLAHPVGRAHEGTTLAVLGSAALYLLGNLLFKWAIFGRLRPAHAVGLVVLGGAWLPAGEL
HHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCCCCCCCC
PALAVSALATGVLCGTAAWEWYARSCETAEPEAAHNP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
PRSYLRPSPEGAHGHHRVTNIELFFDLVFVFAVTQLSHLLISNFTLQGGAQALLLMLAV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
WWVWIFTSWVTNWLDPDKLAIRMLMLVLMTGGLLLSASLPQAFGSRGLAFALAYVFMQFG
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHEECCCCHHHCCCHHHHHHHHHHHHHC
RTVFFMWAVRGESLPMRRNFQRIATWLGISAVLWLAGGLSDGSARWACWIFALVIEWLGP
CCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC
SMGFYTPGLGRSTTNDWNVEGGHMAERCSLFIIIALGESVLVTGSTFAGLAWTAENIAAM
CCCCCCCCCCCCCCCCCCCCCCCHHHHHCEEEEEEECCEEEEECCCHHCHHHHHHHHHHH
ALSFIGSLAMWWLYFDRIAERGARTMSHSADPGRLARLAYTYIHVVLVAGIIVGAVADEF
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLAHPVGRAHEGTTLAVLGSAALYLLGNLLFKWAIFGRLRPAHAVGLVVLGGAWLPAGEL
HHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCCCCCCCC
PALAVSALATGVLCGTAAWEWYARSCETAEPEAAHNP
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9204561; 11481432 [H]