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The map label for this gene is yijO [C]

Identifier: 187927184

GI number: 187927184

Start: 87263

End: 87769

Strand: Direct

Name: yijO [C]

Synonym: Rpic_0074

Alternate gene names: 187927184

Gene position: 87263-87769 (Clockwise)

Preceding gene: 187927183

Following gene: 187927185

Centisome position: 2.21

GC content: 68.64

Gene sequence:

>507_bases
GTGGCACAGGCACACACCGACGCGCAGCAAGACCCCGCGCTGCTGCGCCGCCTGCTGCGCGCCAAAGACCGCATGGACGC
CGCCTCGCACGAGGCGTGGCCCGTCAAGCGGCTGGCCGAAGTGAGCGGCGTATCGGCGGCGCATTTTGCGCGCTCGTTCA
AGCAGGCCTTCGGCATTCCGCCGCACCGCTACCTGCTCACACGCCGCATCGAGCAGGCCACCACCCTGCTGCGCGACACC
GACCTGCCCATCATCGAAATCGCTTACGCCACAGGCTGGGAAAGCCTCGGCACCTTCGGCCGCATCTTCCGCGACATCAC
CGGGCAGAGCCCGAGCGCGCTGCGCCGCCACGCACAGGCCACCGCGTCGCTGCAACAACTCGACCGCGTGCCCGCCTGTG
TGCTGAAGGCGGCGCAGCGGCCCGACCTCGTCACAGCAGTTTCGGAGAAGCGCCGCCAGTTGGCGGAGGGTACAAATCCG
TCACCCACCAACAACAAGGAGCGGTGA

Upstream 100 bases:

>100_bases
ACGCGACCTCGTCGCTGGCGCAGGTGGAAGAGGGTGTGCGCAAGCTTGCGCACGCCATCGGCGAGTTCAAGCTGGGCTGA
CCGCACCGGCGCAGGCCGCG

Downstream 100 bases:

>100_bases
TGAGCCAAGGGATCAATGTCGTCGGGCTGTATGTGGATGACCAGGACGCGGCGCTGGCGTTTTATGTCGACAAGCTGGGG
TTTCGCGTGCACACCGATGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; AraC Family Transcription Regulator; AraC-Family Transcriptional Regulator; Helix-Turn-Helix- Domain Containing Protein; AraC Type Helix-Turn-Helix- Domain-Containing Protein; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator AraC-Type; Transcriptional Regulator Arac Family; AraC Family Regulatory Protein; Helix-Turn-Helix Transcriptional Regulator; Xre Family xin-Antitoxin System Antitoxin Component; Helix-Turn-Helix- Domain Containing Protein AraC Type; Arac Family Transcriptional Regulator; GntR Family Regulatory Protein; AraC Family Helix-Turn-Helix Transcriptional Regulator; Transcription Regulator; Transcriptional Regulator AraC Family Isolated Domain

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MAQAHTDAQQDPALLRRLLRAKDRMDAASHEAWPVKRLAEVSGVSAAHFARSFKQAFGIPPHRYLLTRRIEQATTLLRDT
DLPIIEIAYATGWESLGTFGRIFRDITGQSPSALRRHAQATASLQQLDRVPACVLKAAQRPDLVTAVSEKRRQLAEGTNP
SPTNNKER

Sequences:

>Translated_168_residues
MAQAHTDAQQDPALLRRLLRAKDRMDAASHEAWPVKRLAEVSGVSAAHFARSFKQAFGIPPHRYLLTRRIEQATTLLRDT
DLPIIEIAYATGWESLGTFGRIFRDITGQSPSALRRHAQATASLQQLDRVPACVLKAAQRPDLVTAVSEKRRQLAEGTNP
SPTNNKER
>Mature_167_residues
AQAHTDAQQDPALLRRLLRAKDRMDAASHEAWPVKRLAEVSGVSAAHFARSFKQAFGIPPHRYLLTRRIEQATTLLRDTD
LPIIEIAYATGWESLGTFGRIFRDITGQSPSALRRHAQATASLQQLDRVPACVLKAAQRPDLVTAVSEKRRQLAEGTNPS
PTNNKER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18702; Mature: 18571

Theoretical pI: Translated: 10.99; Mature: 10.99

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQAHTDAQQDPALLRRLLRAKDRMDAASHEAWPVKRLAEVSGVSAAHFARSFKQAFGIP
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC
PHRYLLTRRIEQATTLLRDTDLPIIEIAYATGWESLGTFGRIFRDITGQSPSALRRHAQA
HHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
TASLQQLDRVPACVLKAAQRPDLVTAVSEKRRQLAEGTNPSPTNNKER
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
AQAHTDAQQDPALLRRLLRAKDRMDAASHEAWPVKRLAEVSGVSAAHFARSFKQAFGIP
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC
PHRYLLTRRIEQATTLLRDTDLPIIEIAYATGWESLGTFGRIFRDITGQSPSALRRHAQA
HHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
TASLQQLDRVPACVLKAAQRPDLVTAVSEKRRQLAEGTNPSPTNNKER
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA