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The map label for this gene is ygiV [H]

Identifier: 187927144

GI number: 187927144

Start: 46398

End: 47237

Strand: Reverse

Name: ygiV [H]

Synonym: Rpic_0034

Alternate gene names: 187927144

Gene position: 47237-46398 (Counterclockwise)

Preceding gene: 187927146

Following gene: 187927141

Centisome position: 1.2

GC content: 68.57

Gene sequence:

>840_bases
GTGCTTGCACACATCGACGCGCATCTGGAAGACACGCTGGATGTAGACGGGCTGGCCGGGGTGGCCGCGTTTTCCCGGCA
CCACTTCCACCGCCAGTTCTCGTTGCTGTTCGGCATGAACGTCGGGCGCTATGTGCAGTTGCTGCGCCTGAAGCGCGCCG
CGCATCAACTCGCCTATCGCGACGATGCGCGCATCACCGACATCGCACTGGCGTGCGGGTACGAAGGGCCGGAGGCATTT
GCGCGGGCGTTCCGCAGGCAGGCGGGGCAATCGCCGTCGGCATTTCGGGCGGCGCCGCAGTGGACACCCTGGGCTACCGA
TCTACAGGCGCTGCGCGCCCTCAGGAGCCAACACATGCCGGCACAACCGCAAACCCAATCCGTTGAGATCGTCGAGCGCG
AGGCCGTCGCGGTCGCCGCCATCGAGCACCGCGGCGATCCCGCGCGCCTGAGCGAGACTCTCCGCACGTTCATCGTCTGG
CGCCGTGAGCATCGGCTGCACCCGAGCGTTTCGGCCACGTACAACGTCGTCTACGACAATCCCGACGATGTGCCGCCCGA
GGCGTTCCGCATGGACATCTGCGCGGCCACGCGCGCGCCGATCGCCCCCAATGCAGCGGGCGTAGCGGGCAAGACGCTGG
CGGGCGGCCGCTACGCCGTGCTGCGCCACACGGGCTCCGACGACACGCTCGGCCAGAGCGTTGCGTACCTGTATGCCGAC
TGGCTGCCCGCCAGCGGCGAGGAATTGCGCGACGCGCCGCTGCTGTTCCAGCGCGTGCGCTTTTACCCCGACGTGCCCGA
GCACGAAGCCGTGACGGACGTGCTGCTGCCGCTCAGGTGA

Upstream 100 bases:

>100_bases
CTTCGGTCAGGCACGGCGGTATCACACGCGCTAACGTATCGCCACCCAGGAGCCCAACCTGACCACCGCCACCGACCGCT
ACCTCGCCCGCTTCCGCGCC

Downstream 100 bases:

>100_bases
ACGTTCAGGCGTCCAGGTGAACCTGGATGCCGGTGGCCGTGTAGATGGCCGTGGCCTGGAAGCCGTCCACCACCACCGTC
GAGAACTGGCGGTTGCTGCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MLAHIDAHLEDTLDVDGLAGVAAFSRHHFHRQFSLLFGMNVGRYVQLLRLKRAAHQLAYRDDARITDIALACGYEGPEAF
ARAFRRQAGQSPSAFRAAPQWTPWATDLQALRALRSQHMPAQPQTQSVEIVEREAVAVAAIEHRGDPARLSETLRTFIVW
RREHRLHPSVSATYNVVYDNPDDVPPEAFRMDICAATRAPIAPNAAGVAGKTLAGGRYAVLRHTGSDDTLGQSVAYLYAD
WLPASGEELRDAPLLFQRVRFYPDVPEHEAVTDVLLPLR

Sequences:

>Translated_279_residues
MLAHIDAHLEDTLDVDGLAGVAAFSRHHFHRQFSLLFGMNVGRYVQLLRLKRAAHQLAYRDDARITDIALACGYEGPEAF
ARAFRRQAGQSPSAFRAAPQWTPWATDLQALRALRSQHMPAQPQTQSVEIVEREAVAVAAIEHRGDPARLSETLRTFIVW
RREHRLHPSVSATYNVVYDNPDDVPPEAFRMDICAATRAPIAPNAAGVAGKTLAGGRYAVLRHTGSDDTLGQSVAYLYAD
WLPASGEELRDAPLLFQRVRFYPDVPEHEAVTDVLLPLR
>Mature_279_residues
MLAHIDAHLEDTLDVDGLAGVAAFSRHHFHRQFSLLFGMNVGRYVQLLRLKRAAHQLAYRDDARITDIALACGYEGPEAF
ARAFRRQAGQSPSAFRAAPQWTPWATDLQALRALRSQHMPAQPQTQSVEIVEREAVAVAAIEHRGDPARLSETLRTFIVW
RREHRLHPSVSATYNVVYDNPDDVPPEAFRMDICAATRAPIAPNAAGVAGKTLAGGRYAVLRHTGSDDTLGQSVAYLYAD
WLPASGEELRDAPLLFQRVRFYPDVPEHEAVTDVLLPLR

Specific function: Represses expression of mcbR [H]

COG id: COG3449

COG function: function code L; DNA gyrase inhibitor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI48994918, Length=155, Percent_Identity=41.9354838709677, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1790857, Length=106, Percent_Identity=33.9622641509434, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind [H]

EC number: NA

Molecular weight: Translated: 31049; Mature: 31049

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAHIDAHLEDTLDVDGLAGVAAFSRHHFHRQFSLLFGMNVGRYVQLLRLKRAAHQLAYR
CCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
DDARITDIALACGYEGPEAFARAFRRQAGQSPSAFRAAPQWTPWATDLQALRALRSQHMP
CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCC
AQPQTQSVEIVEREAVAVAAIEHRGDPARLSETLRTFIVWRREHRLHPSVSATYNVVYDN
CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
PDDVPPEAFRMDICAATRAPIAPNAAGVAGKTLAGGRYAVLRHTGSDDTLGQSVAYLYAD
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
WLPASGEELRDAPLLFQRVRFYPDVPEHEAVTDVLLPLR
CCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MLAHIDAHLEDTLDVDGLAGVAAFSRHHFHRQFSLLFGMNVGRYVQLLRLKRAAHQLAYR
CCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
DDARITDIALACGYEGPEAFARAFRRQAGQSPSAFRAAPQWTPWATDLQALRALRSQHMP
CCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCC
AQPQTQSVEIVEREAVAVAAIEHRGDPARLSETLRTFIVWRREHRLHPSVSATYNVVYDN
CCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECC
PDDVPPEAFRMDICAATRAPIAPNAAGVAGKTLAGGRYAVLRHTGSDDTLGQSVAYLYAD
CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
WLPASGEELRDAPLLFQRVRFYPDVPEHEAVTDVLLPLR
CCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]