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The map label for this gene is ywhC [H]

Identifier: 187935655

GI number: 187935655

Start: 2672933

End: 2673571

Strand: Reverse

Name: ywhC [H]

Synonym: CLL_A2564

Alternate gene names: 187935655

Gene position: 2673571-2672933 (Counterclockwise)

Preceding gene: 187934040

Following gene: 187933796

Centisome position: 70.35

GC content: 25.98

Gene sequence:

>639_bases
ATGGATAAGATACTTAATATATTTTTAACAATACCTGCAATTTTAATTGCATTTACATTTCATGAATATGCACATGCAAA
AGTAGCAGATATGCTAGGAGACAATACACCAAAATTTGAAGGAAGATTAACATTAAATCCAATTGCGCATATTGATCCTA
TGGGATTTTTAATGATACTATTATTTAGATTCGGATGGACAAAACCAGTCAGAACTAATCCATCTGCATATAAGAACTAT
TATAAAGATGATTTAAAAGTTAGTATAGCAGGAATATGTGCGAATTTAGTTGTAGCAATAGTATTTTCAATACTATTTGG
AATATTTGTTAGGTTTGCATTTAATGTTTTACCAGAATCTTATTATAGTGTTATATCTCTTATGATTAGCAACATTATAG
CTATTAATATTAGTTTTGCTGTATTTAATTTGTTGCCTATTCCAGGATTAGATGGATTCAAAATATTAGAAGACTTAATG
CCAAAGAAATTTAATAAGATAGGTGATAAATTATATAGATATCAAATGCTAATATTATTAGGAATAATATTTTTTGGTGG
ATTTATAATTAGTGTACCAGTTAATTTCTTATATGGTAAGGCTATAAAATTAGCTTCAATTGTATTTACTATGTTTTAA

Upstream 100 bases:

>100_bases
AGTCATGTTATTATTATTAATTCATTCATTTATAGTAAAGATGTCTTGAAAATTAAGATATGTTTAACAGAATAAAAAAT
TAAAAATGAGGAGGGTGGAT

Downstream 100 bases:

>100_bases
AAATAATAGAAATAATAAATTATTATGTTATATTAAATAAAATAATAATATTAAAATTGAAAATAGAAATGAATTTATAA
GATAAACAAAATGAGCTCGA

Product: protein with metal dependent protease domain

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MDKILNIFLTIPAILIAFTFHEYAHAKVADMLGDNTPKFEGRLTLNPIAHIDPMGFLMILLFRFGWTKPVRTNPSAYKNY
YKDDLKVSIAGICANLVVAIVFSILFGIFVRFAFNVLPESYYSVISLMISNIIAINISFAVFNLLPIPGLDGFKILEDLM
PKKFNKIGDKLYRYQMLILLGIIFFGGFIISVPVNFLYGKAIKLASIVFTMF

Sequences:

>Translated_212_residues
MDKILNIFLTIPAILIAFTFHEYAHAKVADMLGDNTPKFEGRLTLNPIAHIDPMGFLMILLFRFGWTKPVRTNPSAYKNY
YKDDLKVSIAGICANLVVAIVFSILFGIFVRFAFNVLPESYYSVISLMISNIIAINISFAVFNLLPIPGLDGFKILEDLM
PKKFNKIGDKLYRYQMLILLGIIFFGGFIISVPVNFLYGKAIKLASIVFTMF
>Mature_212_residues
MDKILNIFLTIPAILIAFTFHEYAHAKVADMLGDNTPKFEGRLTLNPIAHIDPMGFLMILLFRFGWTKPVRTNPSAYKNY
YKDDLKVSIAGICANLVVAIVFSILFGIFVRFAFNVLPESYYSVISLMISNIIAINISFAVFNLLPIPGLDGFKILEDLM
PKKFNKIGDKLYRYQMLILLGIIFFGGFIISVPVNFLYGKAIKLASIVFTMF

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 23954; Mature: 23954

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKILNIFLTIPAILIAFTFHEYAHAKVADMLGDNTPKFEGRLTLNPIAHIDPMGFLMIL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHCCHHHHHHHH
LFRFGWTKPVRTNPSAYKNYYKDDLKVSIAGICANLVVAIVFSILFGIFVRFAFNVLPES
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
YYSVISLMISNIIAINISFAVFNLLPIPGLDGFKILEDLMPKKFNKIGDKLYRYQMLILL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIIFFGGFIISVPVNFLYGKAIKLASIVFTMF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDKILNIFLTIPAILIAFTFHEYAHAKVADMLGDNTPKFEGRLTLNPIAHIDPMGFLMIL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHCCHHHHHHHH
LFRFGWTKPVRTNPSAYKNYYKDDLKVSIAGICANLVVAIVFSILFGIFVRFAFNVLPES
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
YYSVISLMISNIIAINISFAVFNLLPIPGLDGFKILEDLMPKKFNKIGDKLYRYQMLILL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIIFFGGFIISVPVNFLYGKAIKLASIVFTMF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]