| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is bceR [H]
Identifier: 187935627
GI number: 187935627
Start: 1156468
End: 1157136
Strand: Reverse
Name: bceR [H]
Synonym: CLL_A1126
Alternate gene names: 187935627
Gene position: 1157136-1156468 (Counterclockwise)
Preceding gene: 187932461
Following gene: 187934429
Centisome position: 30.45
GC content: 26.46
Gene sequence:
>669_bases ATGTTTAAAATAATGATAATCGAAGATAATAAAACAATTAGAGAAAAACTTGCTGATTTGCTCGTTAAATATGGATATGA GGTATTTTTACCTAAAGATTTTACAACTATAATTGAAGATTTTAATAAAAGTAATCCACACCTTATTCTTCTTGACATAA ATCTTCCTATATTTGATGGCTTTCACTTTTGCAAAGAAATAAGAAAATATTCTAATATTCCTATTATATTTGTTACAAGT CGTGATAGTAATATGGATGAAATAATGAGTATGACCGTAGGTGGGGATGATTTTATAACTAAACCTTATGACTCACAAAT ATTAATTGCACGAATAACTGCTGTACTTAGAAGAAGCTATAATAATCTATCAAATGATATTCTTGAATATAAAGGAGTTA GCTTAAATTTAGGAAAAGGAAATGTAACCTACCAAAACAAAACTATTGATCTTACTAAAAATGAATTTAAAATACTTAAT AATTTGCTTCAAAATAAAGGAAGTATTGTTACAAGAGATGATTTAATGAACTATTTATGGAATGATGATGTGTTCTTGGA TGATAACACTTTAACTGTTAACATAAACAGACTTAGAAAAAAATTAGAAGAGATTAACATTCATGACTTTATTGAAACTA GGCGTGGATTGGGGTACATAATATCATGA
Upstream 100 bases:
>100_bases TTCATGTTATACTTTTTTTAATTAAGCTTTATATAATTAAATATTAAAGCTTTTAAATGTAAATACTAAGTTAATAATAA TTAAGAAATAAGGTGGTAAT
Downstream 100 bases:
>100_bases GTTTAAAAGAATATATTAATGGAAATAAAACTTTAATACTTTTAAATCTCTTTTATATTATTCTATTAATTGTATTTTTA AGGTTATTTAGCATCCCACA
Product: DNA-binding response regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 222; Mature: 222
Protein sequence:
>222_residues MFKIMIIEDNKTIREKLADLLVKYGYEVFLPKDFTTIIEDFNKSNPHLILLDINLPIFDGFHFCKEIRKYSNIPIIFVTS RDSNMDEIMSMTVGGDDFITKPYDSQILIARITAVLRRSYNNLSNDILEYKGVSLNLGKGNVTYQNKTIDLTKNEFKILN NLLQNKGSIVTRDDLMNYLWNDDVFLDDNTLTVNINRLRKKLEEINIHDFIETRRGLGYIIS
Sequences:
>Translated_222_residues MFKIMIIEDNKTIREKLADLLVKYGYEVFLPKDFTTIIEDFNKSNPHLILLDINLPIFDGFHFCKEIRKYSNIPIIFVTS RDSNMDEIMSMTVGGDDFITKPYDSQILIARITAVLRRSYNNLSNDILEYKGVSLNLGKGNVTYQNKTIDLTKNEFKILN NLLQNKGSIVTRDDLMNYLWNDDVFLDDNTLTVNINRLRKKLEEINIHDFIETRRGLGYIIS >Mature_222_residues MFKIMIIEDNKTIREKLADLLVKYGYEVFLPKDFTTIIEDFNKSNPHLILLDINLPIFDGFHFCKEIRKYSNIPIIFVTS RDSNMDEIMSMTVGGDDFITKPYDSQILIARITAVLRRSYNNLSNDILEYKGVSLNLGKGNVTYQNKTIDLTKNEFKILN NLLQNKGSIVTRDDLMNYLWNDDVFLDDNTLTVNINRLRKKLEEINIHDFIETRRGLGYIIS
Specific function: Member of the two-component regulatory system BceS/BceR involved in the regulation of bacitracin resistance. When activated by BceS, binds to the upstream region of the bceAB promoter and up-regulates the expression of these two genes [H]
COG id: COG0745
COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1786599, Length=223, Percent_Identity=32.2869955156951, Blast_Score=150, Evalue=1e-37, Organism=Escherichia coli, GI1788394, Length=220, Percent_Identity=32.7272727272727, Blast_Score=139, Evalue=1e-34, Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=32.5991189427313, Blast_Score=134, Evalue=7e-33, Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=30.1801801801802, Blast_Score=122, Evalue=1e-29, Organism=Escherichia coli, GI1790860, Length=219, Percent_Identity=27.8538812785388, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1787375, Length=220, Percent_Identity=28.1818181818182, Blast_Score=118, Evalue=3e-28, Organism=Escherichia coli, GI87082012, Length=218, Percent_Identity=32.5688073394495, Blast_Score=116, Evalue=1e-27, Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=33.4841628959276, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI2367329, Length=229, Percent_Identity=30.1310043668122, Blast_Score=109, Evalue=1e-25, Organism=Escherichia coli, GI1787229, Length=226, Percent_Identity=29.646017699115, Blast_Score=107, Evalue=5e-25, Organism=Escherichia coli, GI1790863, Length=225, Percent_Identity=28, Blast_Score=107, Evalue=7e-25, Organism=Escherichia coli, GI1789402, Length=222, Percent_Identity=28.8288288288288, Blast_Score=101, Evalue=3e-23, Organism=Escherichia coli, GI1786784, Length=221, Percent_Identity=27.1493212669683, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI145693140, Length=236, Percent_Identity=30.5084745762712, Blast_Score=86, Evalue=1e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR016032 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 25886; Mature: 25886
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFKIMIIEDNKTIREKLADLLVKYGYEVFLPKDFTTIIEDFNKSNPHLILLDINLPIFDG CEEEEEEECCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCEEEEEEECCCHHHH FHFCKEIRKYSNIPIIFVTSRDSNMDEIMSMTVGGDDFITKPYDSQILIARITAVLRRSY HHHHHHHHHHCCCCEEEEECCCCCHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH NNLSNDILEYKGVSLNLGKGNVTYQNKTIDLTKNEFKILNNLLQNKGSIVTRDDLMNYLW HHHHHHHHHHCCCEEECCCCCEEEECCEEEECHHHHHHHHHHHHCCCCEEEHHHHHHHHC NDDVFLDDNTLTVNINRLRKKLEEINIHDFIETRRGLGYIIS CCCEEEECCEEEEEHHHHHHHHHHCCHHHHHHHHCCCCEECC >Mature Secondary Structure MFKIMIIEDNKTIREKLADLLVKYGYEVFLPKDFTTIIEDFNKSNPHLILLDINLPIFDG CEEEEEEECCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHCCCCCEEEEEEECCCHHHH FHFCKEIRKYSNIPIIFVTSRDSNMDEIMSMTVGGDDFITKPYDSQILIARITAVLRRSY HHHHHHHHHHCCCCEEEEECCCCCHHHHHEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH NNLSNDILEYKGVSLNLGKGNVTYQNKTIDLTKNEFKILNNLLQNKGSIVTRDDLMNYLW HHHHHHHHHHCCCEEECCCCCEEEECCEEEECHHHHHHHHHHHHCCCCEEEHHHHHHHHC NDDVFLDDNTLTVNINRLRKKLEEINIHDFIETRRGLGYIIS CCCEEEECCEEEEEHHHHHHHHHHCCHHHHHHHHCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11058132 [H]