| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is yycG [H]
Identifier: 187935541
GI number: 187935541
Start: 1965078
End: 1966415
Strand: Reverse
Name: yycG [H]
Synonym: CLL_A1865
Alternate gene names: 187935541
Gene position: 1966415-1965078 (Counterclockwise)
Preceding gene: 187933012
Following gene: 187934523
Centisome position: 51.74
GC content: 25.71
Gene sequence:
>1338_bases ATGACTTTAACCATTTTTACAATATCAATATTTGTTAAAAAAACATTTCAAACAGAGTTTGGCAAGTATGTTGATGATAG CAATAAAACAGAAGTTGAACATTTAGTTTTCGACTTAAAAAATATATATAAAGATAATAATTGGGATGTAGAATTAATTG AACAATTAGGCCAAGATGCTATAAAGAAGGGTATTGCATTAGAAATATATAGTTATGATAATACTTCAGTATGGAGTGTT TTTAATGATGAACAAATTTTATCTAATGAAATATTAAGTAGCATTAGGGAAAATATGATGAGTATTGAGGAAAATTGGAA TAGTAATTTAAAAGATTATAAGATAAATATATATGATGAAAATGAAAATATAGTAGGGTATGAGAATATAATTCACTATG AATCAGTTTATTACATGGAAAATGACATGGAGTTTTTAAGTATAATTAATAAGTTTATGGGTATAACAAGCATAATTTCA ATTGGTAGCATTATCTTAATATCAATCTTAATATCTAAAGTATTATCTAATTCTATGGAGAAAGTATCTAAAATGGCAAA GGTAATAGAGAAGGGGAAATATAAAAGCAATTTAGATTATAAAAGTAATATAAAAGAAGTAGATGATCTTATACTTGCTA TAAATAGCTTGTCAGTCAAATTGAATGATGAAGAGATTCTAAGAAAAAGATTAACTACAGATATAGCACATGAGTTAAGA ACACCTCTTACAAGCATTCAAGGACATTTAGATACATTAATTGATGGCGTTTGGGAACCGACTTCTGAAAGACTTATAAG CATTAGAGAAGAAGTGTCAAGATTAGGTGACCTAGTAGGTGAGTTAAGAAAACTTTCAAAATTTGATATTGAAAAGAACA TTTTAAATAAGACTGAGGTTAATTTAAAAGAGCTTATACAAAATATAATTTATAATTATGAAAGTAAGGCTTTAGAGAAA CAAATTACTATAGAGAGTAACCTTAAAGATATATTTATAAATGTAGATAAAAATCAATTTTCGCAAGTTTTAATAAATAT TTTATCTAATGCAATTAAGTATACTAATATAGGTGGTAGAGTTGAATTAAATATGTATGAAGACATCGATAATGTAAATA TAAGTATTAAAGATACAGGATGTGGAATTCCTAAGGAAGATATAAAGAATATATTTGAAAGGTTTTATAGAGTTGATAGA TCTAGAAATAAAAAGACAGGTGGAATAGGGGTTGGACTTACCATAGCTCAAAGTATAATAAATGCTCATAATGGGGAAAT TATAGTTAAGAGTGAACTGAATAAAGGGACAGAGTTTATAATTAAACTTTCTAAATAA
Upstream 100 bases:
>100_bases AAGATAATAAAAACTATTTATGGGGTAGGATATAGATTTGAATTACAAGATTAAAAGTATATCATTAAGAAATACAATTT TAATATCATTTACTATAATC
Downstream 100 bases:
>100_bases GTATATATTAAATGATTATTTAATGAAAAAGTATTCAATAAGATATAGAGTACTTTTTTATTTTTTTATTAATATAAAGA AAAGTAAGATTAGACTTAAT
Product: alkaline phosphatase synthesis sensor protein PhoR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 445; Mature: 444
Protein sequence:
>445_residues MTLTIFTISIFVKKTFQTEFGKYVDDSNKTEVEHLVFDLKNIYKDNNWDVELIEQLGQDAIKKGIALEIYSYDNTSVWSV FNDEQILSNEILSSIRENMMSIEENWNSNLKDYKINIYDENENIVGYENIIHYESVYYMENDMEFLSIINKFMGITSIIS IGSIILISILISKVLSNSMEKVSKMAKVIEKGKYKSNLDYKSNIKEVDDLILAINSLSVKLNDEEILRKRLTTDIAHELR TPLTSIQGHLDTLIDGVWEPTSERLISIREEVSRLGDLVGELRKLSKFDIEKNILNKTEVNLKELIQNIIYNYESKALEK QITIESNLKDIFINVDKNQFSQVLINILSNAIKYTNIGGRVELNMYEDIDNVNISIKDTGCGIPKEDIKNIFERFYRVDR SRNKKTGGIGVGLTIAQSIINAHNGEIIVKSELNKGTEFIIKLSK
Sequences:
>Translated_445_residues MTLTIFTISIFVKKTFQTEFGKYVDDSNKTEVEHLVFDLKNIYKDNNWDVELIEQLGQDAIKKGIALEIYSYDNTSVWSV FNDEQILSNEILSSIRENMMSIEENWNSNLKDYKINIYDENENIVGYENIIHYESVYYMENDMEFLSIINKFMGITSIIS IGSIILISILISKVLSNSMEKVSKMAKVIEKGKYKSNLDYKSNIKEVDDLILAINSLSVKLNDEEILRKRLTTDIAHELR TPLTSIQGHLDTLIDGVWEPTSERLISIREEVSRLGDLVGELRKLSKFDIEKNILNKTEVNLKELIQNIIYNYESKALEK QITIESNLKDIFINVDKNQFSQVLINILSNAIKYTNIGGRVELNMYEDIDNVNISIKDTGCGIPKEDIKNIFERFYRVDR SRNKKTGGIGVGLTIAQSIINAHNGEIIVKSELNKGTEFIIKLSK >Mature_444_residues TLTIFTISIFVKKTFQTEFGKYVDDSNKTEVEHLVFDLKNIYKDNNWDVELIEQLGQDAIKKGIALEIYSYDNTSVWSVF NDEQILSNEILSSIRENMMSIEENWNSNLKDYKINIYDENENIVGYENIIHYESVYYMENDMEFLSIINKFMGITSIISI GSIILISILISKVLSNSMEKVSKMAKVIEKGKYKSNLDYKSNIKEVDDLILAINSLSVKLNDEEILRKRLTTDIAHELRT PLTSIQGHLDTLIDGVWEPTSERLISIREEVSRLGDLVGELRKLSKFDIEKNILNKTEVNLKELIQNIIYNYESKALEKQ ITIESNLKDIFINVDKNQFSQVLINILSNAIKYTNIGGRVELNMYEDIDNVNISIKDTGCGIPKEDIKNIFERFYRVDRS RNKKTGGIGVGLTIAQSIINAHNGEIIVKSELNKGTEFIIKLSK
Specific function: Member of the two-component regulatory system YycG/YycF involved in the regulation of the ftsAZ operon, the yocH and ykvT, cwlO, lytE, ydjM, yjeA, yoeB genes and the tagAB and tagDEF operons. Probably phosphorylates YycF [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1788393, Length=240, Percent_Identity=31.25, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI1786783, Length=303, Percent_Identity=28.0528052805281, Blast_Score=118, Evalue=8e-28, Organism=Escherichia coli, GI1786600, Length=226, Percent_Identity=29.2035398230088, Blast_Score=113, Evalue=3e-26, Organism=Escherichia coli, GI145693157, Length=215, Percent_Identity=31.6279069767442, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1790346, Length=269, Percent_Identity=26.7657992565056, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1787894, Length=261, Percent_Identity=26.8199233716475, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI1789149, Length=216, Percent_Identity=30.0925925925926, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1790861, Length=325, Percent_Identity=24.3076923076923, Blast_Score=96, Evalue=6e-21, Organism=Escherichia coli, GI1788549, Length=218, Percent_Identity=29.3577981651376, Blast_Score=96, Evalue=7e-21, Organism=Escherichia coli, GI1788713, Length=252, Percent_Identity=26.984126984127, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1786912, Length=229, Percent_Identity=27.0742358078603, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1789403, Length=268, Percent_Identity=26.865671641791, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI48994928, Length=215, Percent_Identity=28.8372093023256, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI87082128, Length=303, Percent_Identity=25.0825082508251, Blast_Score=86, Evalue=7e-18, Organism=Escherichia coli, GI1790551, Length=261, Percent_Identity=26.8199233716475, Blast_Score=83, Evalue=4e-17, Organism=Escherichia coli, GI1790436, Length=238, Percent_Identity=27.3109243697479, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1788279, Length=300, Percent_Identity=27, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI87081816, Length=250, Percent_Identity=23.2, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1787374, Length=291, Percent_Identity=25.7731958762887, Blast_Score=68, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 51135; Mature: 51004
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLTIFTISIFVKKTFQTEFGKYVDDSNKTEVEHLVFDLKNIYKDNNWDVELIEQLGQDA CEEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHH IKKGIALEIYSYDNTSVWSVFNDEQILSNEILSSIRENMMSIEENWNSNLKDYKINIYDE HHCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC NENIVGYENIIHYESVYYMENDMEFLSIINKFMGITSIISIGSIILISILISKVLSNSME CCCEECHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KVSKMAKVIEKGKYKSNLDYKSNIKEVDDLILAINSLSVKLNDEEILRKRLTTDIAHELR HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCEEEECHHHHHHHHHHHHHHHHHH TPLTSIQGHLDTLIDGVWEPTSERLISIREEVSRLGDLVGELRKLSKFDIEKNILNKTEV CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCC NLKELIQNIIYNYESKALEKQITIESNLKDIFINVDKNQFSQVLINILSNAIKYTNIGGR CHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCE VELNMYEDIDNVNISIKDTGCGIPKEDIKNIFERFYRVDRSRNKKTGGIGVGLTIAQSII EEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH NAHNGEIIVKSELNKGTEFIIKLSK HCCCCCEEEECCCCCCCEEEEEECC >Mature Secondary Structure TLTIFTISIFVKKTFQTEFGKYVDDSNKTEVEHLVFDLKNIYKDNNWDVELIEQLGQDA EEEEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCHHH IKKGIALEIYSYDNTSVWSVFNDEQILSNEILSSIRENMMSIEENWNSNLKDYKINIYDE HHCCCEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEC NENIVGYENIIHYESVYYMENDMEFLSIINKFMGITSIISIGSIILISILISKVLSNSME CCCEECHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KVSKMAKVIEKGKYKSNLDYKSNIKEVDDLILAINSLSVKLNDEEILRKRLTTDIAHELR HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCEEEECHHHHHHHHHHHHHHHHHH TPLTSIQGHLDTLIDGVWEPTSERLISIREEVSRLGDLVGELRKLSKFDIEKNILNKTEV CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCC NLKELIQNIIYNYESKALEKQITIESNLKDIFINVDKNQFSQVLINILSNAIKYTNIGGR CHHHHHHHHHHCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCE VELNMYEDIDNVNISIKDTGCGIPKEDIKNIFERFYRVDRSRNKKTGGIGVGLTIAQSII EEEEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH NAHNGEIIVKSELNKGTEFIIKLSK HCCCCCEEEECCCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377; 9829949; 10878122; 11758928 [H]