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The map label for this gene is stc [H]

Identifier: 187935526

GI number: 187935526

Start: 3351083

End: 3352996

Strand: Reverse

Name: stc [H]

Synonym: CLL_A3216

Alternate gene names: 187935526

Gene position: 3352996-3351083 (Counterclockwise)

Preceding gene: 187932594

Following gene: 187934513

Centisome position: 88.23

GC content: 27.48

Gene sequence:

>1914_bases
ATGAAGAGTAAAAGAATGGTGGTTGAAGATTCTCATAAGAGAAGTGAGAATTATGGAGTTGAAAAAAAATCAAGTTATTC
AAAAAAGATTCTTTCAGGAATAGAATTAGAAAAAGTACTAGCTGACAATAAAGAATTAATAGAAATATCAAAGCTATACA
TTGATATGGTTTTTTCAGCAGTTATGGATAATGAATTTATTATTGTTTTAACAGATAAAAATGGATGTATTTTATATATA
AAAGGAGCAGAAGAGAATACTAGCAAATTAGATTGCATTAATCTTAACGTTGGTGCATATATGGATGAACAAAATATAGG
CACAAATGCTATGGGAACTGCTATTAAAGAAGATAATTGTGTTCAAATAACGGCTAATGAGCACTATATAGAGGGATTAC
AAAGTTTAACTTGTTCAGCTGCACCTATTCACGATACTGATGGAAAGATAATAGGAACTTTAAATTTAAGTGGTAGGAGC
AATATGAAGCATCCTCATACTTTAGGATTAGTTGTCTTTGGGGTAAAGGCAATTGAAAATGAATTTGATAATAGAAAAAT
AAACAATATATTGACTCAAACCTATAATTATATGGAGAGTATTATAGATAATCTTGATAAGGGGATCATGATTGTTGATA
AAGATGAGAAGATAGTAAATATTAATAGTTTTGGTGCAGAAATGTTTAATAAACCTAAAGAATCATTATTACATGAAAAA
TTACATTATATTTTGCCTAATATGGGCAATATTCTTGAAGAATTAGATCTGAATAAAAATAATGTAATTAAAGATGTTAA
GTTTAAGCATACAAGTAAATATAAGACTAGACTAGAATTCAAGGGAATTAGACATAAGGAAAAGATAATTGGAATGGTTG
TCACTATGATAAGTGAAAAAGAAGAAAGGGATTTAAAAAATCCAACAGGAGCTTTTTGGACTTTTAATGATATAATAGGC
GAAAGTGCTGCAATTGCTAATGTAGTAATTAACAGCAAAATTATTTCTAATAGTCCTTCAACTGTTTTAATTCAAGGGGA
AAGTGGAACAGGAAAAGAAGTATTAGCTCAAGCAATGCATAATTATAGTTTAAGAAGAACTAATAAATTTGTAGCTATAA
ATTGTGGAGCTATACCTATGAACATAATAGAAAGTGAACTTTTTGGATATGAAGATGGTACATTTACTGGTGGTAAAAAA
GGGGGGAAACCAGGAAAATTTGAAGTGGCTAATGGTGGAACTTTGTTTTTAGATGAAATAGGCGAAATGCCACTTGATAT
GCAAGTTAGGCTTTTAAGAGTGTTACAAGAAGGTAGAGTAACTAGACTTGGTGGAAATAAAGAAATCTCCGTTGATGTTA
GAGTAATTGCTGCTACAAATAAAAAGCTAAAAAAAGAAGTTGAAAAAGGAGCATTTAGAGAAGATCTTTATTATAGATTA
TGTGTTATTCCTATAACTTTACCTCCTTTACGTGAAAGAAAAGGGGATGTTGAAAAACTTATAGAATATTTTTTAAGAAT
AAAATCATTTAAGCTAAATAAAAGAATTCCTGAAATTAATAAAGAATTATATAAAAATTTATTATTATATAATTGGCCAG
GAAACATAAGACAACTAGAAAATTATATTGAAAACATAGTTAATTTAGATGGGATTTTATCATTTGATTTACTAGATGAT
AGTGAAGATGAAAAAACTGATATAATTCATAAAGAAGTTAAAGAAGAAGTTTGTTATGAAAAAGATGAAAACTTTGAAGT
TAAAGAAGAAGATTTTAATTTAGAAAAGGTAGAAAAGAAAACTATTAAAGAAGCTATAAAATCTTATAATCATAATATGA
CCAAAGTAGCACAAGCATTGGGAATAAGTAGAAATACATTATACTTAAAAATAAAAAAATATAATATAGAGTAA

Upstream 100 bases:

>100_bases
ATTATAGAATTAATTGTAATTACAATTAAATATAGATGGAAAACAGATAACAAACCTATTATATAAATAATTTAACTTAA
AAATGAACAGGAGACTTTTA

Downstream 100 bases:

>100_bases
ACATGTTAAGGCTGTTTATATATGCATAAGTAAAGCGAACGGAGTAATTGCATATATTAACATTTATTTAAATTATGTTT
ATTTTTTATTTTAGTATTAT

Product: signal-transduction and transcriptional-control protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 637; Mature: 637

Protein sequence:

>637_residues
MKSKRMVVEDSHKRSENYGVEKKSSYSKKILSGIELEKVLADNKELIEISKLYIDMVFSAVMDNEFIIVLTDKNGCILYI
KGAEENTSKLDCINLNVGAYMDEQNIGTNAMGTAIKEDNCVQITANEHYIEGLQSLTCSAAPIHDTDGKIIGTLNLSGRS
NMKHPHTLGLVVFGVKAIENEFDNRKINNILTQTYNYMESIIDNLDKGIMIVDKDEKIVNINSFGAEMFNKPKESLLHEK
LHYILPNMGNILEELDLNKNNVIKDVKFKHTSKYKTRLEFKGIRHKEKIIGMVVTMISEKEERDLKNPTGAFWTFNDIIG
ESAAIANVVINSKIISNSPSTVLIQGESGTGKEVLAQAMHNYSLRRTNKFVAINCGAIPMNIIESELFGYEDGTFTGGKK
GGKPGKFEVANGGTLFLDEIGEMPLDMQVRLLRVLQEGRVTRLGGNKEISVDVRVIAATNKKLKKEVEKGAFREDLYYRL
CVIPITLPPLRERKGDVEKLIEYFLRIKSFKLNKRIPEINKELYKNLLLYNWPGNIRQLENYIENIVNLDGILSFDLLDD
SEDEKTDIIHKEVKEEVCYEKDENFEVKEEDFNLEKVEKKTIKEAIKSYNHNMTKVAQALGISRNTLYLKIKKYNIE

Sequences:

>Translated_637_residues
MKSKRMVVEDSHKRSENYGVEKKSSYSKKILSGIELEKVLADNKELIEISKLYIDMVFSAVMDNEFIIVLTDKNGCILYI
KGAEENTSKLDCINLNVGAYMDEQNIGTNAMGTAIKEDNCVQITANEHYIEGLQSLTCSAAPIHDTDGKIIGTLNLSGRS
NMKHPHTLGLVVFGVKAIENEFDNRKINNILTQTYNYMESIIDNLDKGIMIVDKDEKIVNINSFGAEMFNKPKESLLHEK
LHYILPNMGNILEELDLNKNNVIKDVKFKHTSKYKTRLEFKGIRHKEKIIGMVVTMISEKEERDLKNPTGAFWTFNDIIG
ESAAIANVVINSKIISNSPSTVLIQGESGTGKEVLAQAMHNYSLRRTNKFVAINCGAIPMNIIESELFGYEDGTFTGGKK
GGKPGKFEVANGGTLFLDEIGEMPLDMQVRLLRVLQEGRVTRLGGNKEISVDVRVIAATNKKLKKEVEKGAFREDLYYRL
CVIPITLPPLRERKGDVEKLIEYFLRIKSFKLNKRIPEINKELYKNLLLYNWPGNIRQLENYIENIVNLDGILSFDLLDD
SEDEKTDIIHKEVKEEVCYEKDENFEVKEEDFNLEKVEKKTIKEAIKSYNHNMTKVAQALGISRNTLYLKIKKYNIE
>Mature_637_residues
MKSKRMVVEDSHKRSENYGVEKKSSYSKKILSGIELEKVLADNKELIEISKLYIDMVFSAVMDNEFIIVLTDKNGCILYI
KGAEENTSKLDCINLNVGAYMDEQNIGTNAMGTAIKEDNCVQITANEHYIEGLQSLTCSAAPIHDTDGKIIGTLNLSGRS
NMKHPHTLGLVVFGVKAIENEFDNRKINNILTQTYNYMESIIDNLDKGIMIVDKDEKIVNINSFGAEMFNKPKESLLHEK
LHYILPNMGNILEELDLNKNNVIKDVKFKHTSKYKTRLEFKGIRHKEKIIGMVVTMISEKEERDLKNPTGAFWTFNDIIG
ESAAIANVVINSKIISNSPSTVLIQGESGTGKEVLAQAMHNYSLRRTNKFVAINCGAIPMNIIESELFGYEDGTFTGGKK
GGKPGKFEVANGGTLFLDEIGEMPLDMQVRLLRVLQEGRVTRLGGNKEISVDVRVIAATNKKLKKEVEKGAFREDLYYRL
CVIPITLPPLRERKGDVEKLIEYFLRIKSFKLNKRIPEINKELYKNLLLYNWPGNIRQLENYIENIVNLDGILSFDLLDD
SEDEKTDIIHKEVKEEVCYEKDENFEVKEEDFNLEKVEKKTIKEAIKSYNHNMTKVAQALGISRNTLYLKIKKYNIE

Specific function: Unknown

COG id: COG3284

COG function: function code QK; Transcriptional activator of acetoin/glycerol metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=494, Percent_Identity=34.8178137651822, Blast_Score=272, Evalue=5e-74,
Organism=Escherichia coli, GI1788550, Length=342, Percent_Identity=41.5204678362573, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI1786524, Length=332, Percent_Identity=39.4578313253012, Blast_Score=253, Evalue=3e-68,
Organism=Escherichia coli, GI87082117, Length=233, Percent_Identity=51.0729613733906, Blast_Score=247, Evalue=1e-66,
Organism=Escherichia coli, GI1790299, Length=368, Percent_Identity=38.0434782608696, Blast_Score=244, Evalue=1e-65,
Organism=Escherichia coli, GI1789087, Length=325, Percent_Identity=42.1538461538462, Blast_Score=234, Evalue=2e-62,
Organism=Escherichia coli, GI1790437, Length=330, Percent_Identity=40.3030303030303, Blast_Score=228, Evalue=1e-60,
Organism=Escherichia coli, GI1788905, Length=232, Percent_Identity=46.1206896551724, Blast_Score=225, Evalue=7e-60,
Organism=Escherichia coli, GI87082152, Length=327, Percent_Identity=38.8379204892966, Blast_Score=206, Evalue=3e-54,
Organism=Escherichia coli, GI87081872, Length=327, Percent_Identity=34.5565749235474, Blast_Score=198, Evalue=1e-51,
Organism=Escherichia coli, GI1787583, Length=353, Percent_Identity=35.4107648725212, Blast_Score=196, Evalue=3e-51,
Organism=Escherichia coli, GI87081858, Length=621, Percent_Identity=24.9597423510467, Blast_Score=194, Evalue=2e-50,
Organism=Escherichia coli, GI1789828, Length=243, Percent_Identity=32.9218106995885, Blast_Score=134, Evalue=2e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 72423; Mature: 72423

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKRMVVEDSHKRSENYGVEKKSSYSKKILSGIELEKVLADNKELIEISKLYIDMVFSA
CCCCCCEECCCCCCHHHCCCCCHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHH
VMDNEFIIVLTDKNGCILYIKGAEENTSKLDCINLNVGAYMDEQNIGTNAMGTAIKEDNC
HHCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEECCCCEECCCCCCCCHHCCCCCCCCE
VQITANEHYIEGLQSLTCSAAPIHDTDGKIIGTLNLSGRSNMKHPHTLGLVVFGVKAIEN
EEEECCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
EFDNRKINNILTQTYNYMESIIDNLDKGIMIVDKDEKIVNINSFGAEMFNKPKESLLHEK
HHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEHHHCHHHHCCHHHHHHHHH
LHYILPNMGNILEELDLNKNNVIKDVKFKHTSKYKTRLEFKGIRHKEKIIGMVVTMISEK
HHHHCCCHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCH
EERDLKNPTGAFWTFNDIIGESAAIANVVINSKIISNSPSTVLIQGESGTGKEVLAQAMH
HHHHCCCCCCCEEEHHHHHCCCHHHHHHEEECEEECCCCCEEEEECCCCCCHHHHHHHHH
NYSLRRTNKFVAINCGAIPMNIIESELFGYEDGTFTGGKKGGKPGKFEVANGGTLFLDEI
CCHHHCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEEEEHHH
GEMPLDMQVRLLRVLQEGRVTRLGGNKEISVDVRVIAATNKKLKKEVEKGAFREDLYYRL
CCCCCHHHHHHHHHHHCCCEEECCCCEEEEEEEEEEEECCHHHHHHHHHCCHHHHHEEEE
CVIPITLPPLRERKGDVEKLIEYFLRIKSFKLNKRIPEINKELYKNLLLYNWPGNIRQLE
EEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCEEEECCCCCHHHHH
NYIENIVNLDGILSFDLLDDSEDEKTDIIHKEVKEEVCYEKDENFEVKEEDFNLEKVEKK
HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHH
TIKEAIKSYNHNMTKVAQALGISRNTLYLKIKKYNIE
HHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCC
>Mature Secondary Structure
MKSKRMVVEDSHKRSENYGVEKKSSYSKKILSGIELEKVLADNKELIEISKLYIDMVFSA
CCCCCCEECCCCCCHHHCCCCCHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHH
VMDNEFIIVLTDKNGCILYIKGAEENTSKLDCINLNVGAYMDEQNIGTNAMGTAIKEDNC
HHCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEECCCCEECCCCCCCCHHCCCCCCCCE
VQITANEHYIEGLQSLTCSAAPIHDTDGKIIGTLNLSGRSNMKHPHTLGLVVFGVKAIEN
EEEECCHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHH
EFDNRKINNILTQTYNYMESIIDNLDKGIMIVDKDEKIVNINSFGAEMFNKPKESLLHEK
HHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEHHHCHHHHCCHHHHHHHHH
LHYILPNMGNILEELDLNKNNVIKDVKFKHTSKYKTRLEFKGIRHKEKIIGMVVTMISEK
HHHHCCCHHHHHHHHCCCCCCCEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCH
EERDLKNPTGAFWTFNDIIGESAAIANVVINSKIISNSPSTVLIQGESGTGKEVLAQAMH
HHHHCCCCCCCEEEHHHHHCCCHHHHHHEEECEEECCCCCEEEEECCCCCCHHHHHHHHH
NYSLRRTNKFVAINCGAIPMNIIESELFGYEDGTFTGGKKGGKPGKFEVANGGTLFLDEI
CCHHHCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEEEEHHH
GEMPLDMQVRLLRVLQEGRVTRLGGNKEISVDVRVIAATNKKLKKEVEKGAFREDLYYRL
CCCCCHHHHHHHHHHHCCCEEECCCCEEEEEEEEEEEECCHHHHHHHHHCCHHHHHEEEE
CVIPITLPPLRERKGDVEKLIEYFLRIKSFKLNKRIPEINKELYKNLLLYNWPGNIRQLE
EEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCEEEECCCCCHHHHH
NYIENIVNLDGILSFDLLDDSEDEKTDIIHKEVKEEVCYEKDENFEVKEEDFNLEKVEKK
HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHH
TIKEAIKSYNHNMTKVAQALGISRNTLYLKIKKYNIE
HHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA