Click here to switch to the map view.

The map label for this gene is yedQ [H]

Identifier: 187935043

GI number: 187935043

Start: 3362071

End: 3364158

Strand: Reverse

Name: yedQ [H]

Synonym: CLL_A3222

Alternate gene names: 187935043

Gene position: 3364158-3362071 (Counterclockwise)

Preceding gene: 187932658

Following gene: 187932327

Centisome position: 88.52

GC content: 23.71

Gene sequence:

>2088_bases
ATGAAGTTTCCTGAATTACAAGAACATATTGAGATTTTTATGAATAATGAAAATTATATAGGCTATTTTAGAAAATTTGC
AGTTGATACTATTGAACATGATCCGCATTATGTAAAAAATGTTATGGAATATCTCTTAAATATTTCAAAAGAACTTAATT
ATGAATTAGCAGCACATTGGTGTTTAATATATATTGGATGGTGTGAACAACTTGAGTGTAATTTTGAAAAATCAATAAAA
TTACATTTAATGTCAAAAGAATATTTTGAAAAAATTAAAGAATTAGAAGGTGTTAGTGTAACTTGTAATGCCTTGCTTGT
TGACTATTTAAAAATAGGTCAGTTTGATTTAGCTATAATTAATGCACTAAGGGGTGCTGATATTGCAAGAAAATTAGGTG
ATAAGGAATTAACTATAATATTATTACTTAATATATCATATGCATATGTAGATTCTTATAATTATAATGAAGCTATTAAT
ATACTAAAAAAACTTAAAACATATAAAAATGAGTTTAATTTCAAACATGAAATATTAATGTTTATGATTTTAGCTGAATG
TGCACTTTCTATAAATGATTTAGAAAGAACATTTGATTACGCTACATATGCATTGAAAATTATAAATGAGAACAATACTA
AAATATATAAGGTGGAATTATTTTCTATAATTGCAGATGTTTTATATAGAAAGAATGAAGAATGTAAAGCTATAAAATTA
TTTGAAAAGTCATTAGAAATTCTTAAACAAGATGATAATTATTTAAGAGCAAAGATATTAATAAGATGGGGACAGTGTAG
TTTATATAATGAAAATTATATTTTAGCAGAAAAAAAGTTTTTAGAGTGCCTTAATTTATTAGAAGAAACAAACTTTATTA
CGTTGGAATCAAAGGTTTATAAAGAATTAAGTACTATTTATGAAAAGTTAGGAAAATATAAAGAAGCATTTGAAGCAATG
AAAGATTATGTTAAGTATGAAAAAAGAGTATATGATTTACACAGTAGTAGTTGGTTTAGCATTTTTAAATATAGAAATTT
AGAAGAGAAAGCAAATGTATATAGGGAATTATATAATAAGATAGAGCGTATTTCAGAAATAGGAAAAGAAATAATATCAA
TATTAGATATAGATAAATTATTATATACCATTTATATTGAAGTTAAAAAATTAATTGATACTGATATATTTGGAATTGCT
TTATTTAATGAACACAAAAATGAGTTAGACTATAAATTGTTTATAGAAAATGGAGACCTTAAAAATTTATGTTCTATTTC
TATTGACAATAGAAATAGCTTTGGTGTGTACTGCTTTAAAAGTAAAAAAGAAATTTTAATTAACAACATTGAAAATGAAT
ATGTTAAGTATGTAAAAAAATTTGATGTTAATAAATACAAGAATGCTCCATACTCAATAATGTATATTCCTATAATTATT
AAAAATAAATCAATAGGTGTTATAAGTGTTCAAAGCTATAGAAAAAATGCATATACGAGAAATGAGTTAAATGAACTCAA
AATCTTGTCATCTTATATAGCAATTGCACTTCAAAATGGTAAAACATTTAATACAGTTGAACATTTTGCAAAGTATGATT
CATTAACAGGAATGTTTAATAGAAATGTTATATTAACTCAAGGAGAAAGGATTTTTAATAACAAATTAGAGACTAAGCAG
ACGTTCTCTATAATAATGATTGATGTTGATTATTTTAAGCAAATAAATGATAGATATGGTCATGACATAGGTGATATTGT
TTTAAGAGACATTAGTTCAATAATAAAAAGTGAGATTAGAAATACTGATTCTTTAGGACGATATGGTGGCGAAGAATTTT
TGATATTATTACCAAATATAAATTTAGAAGAAGCTAAAAAGATTGCAGATAGAATTAGAAAGAGTGTTGAGAATTATAAA
TATCATTATTTAACTAGTGAAAAACATAATCGTGTTACATTAAGTCTTGGTGTTTATGAATTCAATAAAAATGAATTCGA
TTTTTTTGAAGGCGTAAAAAAGGCTGATAAAGCATTATATATGGCAAAATCTTTAGGTCGAAATAGGGCAATTGAATATT
CAGGATAG

Upstream 100 bases:

>100_bases
ACAATAGATGGGTATACTTATAATTTTAATAAAGATGGTTCAGTAAATTTTAACTGATTTGTGTATTGACTTAATGATTT
GATATGGAGGTTAACTGTTT

Downstream 100 bases:

>100_bases
ATTGAAAGAACATTTTTATATGAGCTTTTATACTTAAATTTGTTAATAACAATTATAGGTATAAAAGCTCATAATTTTTT
TGTTTTCAAATTAAGTTATG

Product: ggdef domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 695; Mature: 695

Protein sequence:

>695_residues
MKFPELQEHIEIFMNNENYIGYFRKFAVDTIEHDPHYVKNVMEYLLNISKELNYELAAHWCLIYIGWCEQLECNFEKSIK
LHLMSKEYFEKIKELEGVSVTCNALLVDYLKIGQFDLAIINALRGADIARKLGDKELTIILLLNISYAYVDSYNYNEAIN
ILKKLKTYKNEFNFKHEILMFMILAECALSINDLERTFDYATYALKIINENNTKIYKVELFSIIADVLYRKNEECKAIKL
FEKSLEILKQDDNYLRAKILIRWGQCSLYNENYILAEKKFLECLNLLEETNFITLESKVYKELSTIYEKLGKYKEAFEAM
KDYVKYEKRVYDLHSSSWFSIFKYRNLEEKANVYRELYNKIERISEIGKEIISILDIDKLLYTIYIEVKKLIDTDIFGIA
LFNEHKNELDYKLFIENGDLKNLCSISIDNRNSFGVYCFKSKKEILINNIENEYVKYVKKFDVNKYKNAPYSIMYIPIII
KNKSIGVISVQSYRKNAYTRNELNELKILSSYIAIALQNGKTFNTVEHFAKYDSLTGMFNRNVILTQGERIFNNKLETKQ
TFSIIMIDVDYFKQINDRYGHDIGDIVLRDISSIIKSEIRNTDSLGRYGGEEFLILLPNINLEEAKKIADRIRKSVENYK
YHYLTSEKHNRVTLSLGVYEFNKNEFDFFEGVKKADKALYMAKSLGRNRAIEYSG

Sequences:

>Translated_695_residues
MKFPELQEHIEIFMNNENYIGYFRKFAVDTIEHDPHYVKNVMEYLLNISKELNYELAAHWCLIYIGWCEQLECNFEKSIK
LHLMSKEYFEKIKELEGVSVTCNALLVDYLKIGQFDLAIINALRGADIARKLGDKELTIILLLNISYAYVDSYNYNEAIN
ILKKLKTYKNEFNFKHEILMFMILAECALSINDLERTFDYATYALKIINENNTKIYKVELFSIIADVLYRKNEECKAIKL
FEKSLEILKQDDNYLRAKILIRWGQCSLYNENYILAEKKFLECLNLLEETNFITLESKVYKELSTIYEKLGKYKEAFEAM
KDYVKYEKRVYDLHSSSWFSIFKYRNLEEKANVYRELYNKIERISEIGKEIISILDIDKLLYTIYIEVKKLIDTDIFGIA
LFNEHKNELDYKLFIENGDLKNLCSISIDNRNSFGVYCFKSKKEILINNIENEYVKYVKKFDVNKYKNAPYSIMYIPIII
KNKSIGVISVQSYRKNAYTRNELNELKILSSYIAIALQNGKTFNTVEHFAKYDSLTGMFNRNVILTQGERIFNNKLETKQ
TFSIIMIDVDYFKQINDRYGHDIGDIVLRDISSIIKSEIRNTDSLGRYGGEEFLILLPNINLEEAKKIADRIRKSVENYK
YHYLTSEKHNRVTLSLGVYEFNKNEFDFFEGVKKADKALYMAKSLGRNRAIEYSG
>Mature_695_residues
MKFPELQEHIEIFMNNENYIGYFRKFAVDTIEHDPHYVKNVMEYLLNISKELNYELAAHWCLIYIGWCEQLECNFEKSIK
LHLMSKEYFEKIKELEGVSVTCNALLVDYLKIGQFDLAIINALRGADIARKLGDKELTIILLLNISYAYVDSYNYNEAIN
ILKKLKTYKNEFNFKHEILMFMILAECALSINDLERTFDYATYALKIINENNTKIYKVELFSIIADVLYRKNEECKAIKL
FEKSLEILKQDDNYLRAKILIRWGQCSLYNENYILAEKKFLECLNLLEETNFITLESKVYKELSTIYEKLGKYKEAFEAM
KDYVKYEKRVYDLHSSSWFSIFKYRNLEEKANVYRELYNKIERISEIGKEIISILDIDKLLYTIYIEVKKLIDTDIFGIA
LFNEHKNELDYKLFIENGDLKNLCSISIDNRNSFGVYCFKSKKEILINNIENEYVKYVKKFDVNKYKNAPYSIMYIPIII
KNKSIGVISVQSYRKNAYTRNELNELKILSSYIAIALQNGKTFNTVEHFAKYDSLTGMFNRNVILTQGERIFNNKLETKQ
TFSIIMIDVDYFKQINDRYGHDIGDIVLRDISSIIKSEIRNTDSLGRYGGEEFLILLPNINLEEAKKIADRIRKSVENYK
YHYLTSEKHNRVTLSLGVYEFNKNEFDFFEGVKKADKALYMAKSLGRNRAIEYSG

Specific function: Involves in the regulation of cellulose production [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=38.5093167701863, Blast_Score=119, Evalue=7e-28,
Organism=Escherichia coli, GI1788381, Length=173, Percent_Identity=35.2601156069364, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=36.969696969697, Blast_Score=114, Evalue=3e-26,
Organism=Escherichia coli, GI87081881, Length=166, Percent_Identity=39.7590361445783, Blast_Score=110, Evalue=3e-25,
Organism=Escherichia coli, GI145693134, Length=162, Percent_Identity=38.2716049382716, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=36.4197530864198, Blast_Score=102, Evalue=8e-23,
Organism=Escherichia coli, GI1786584, Length=157, Percent_Identity=31.8471337579618, Blast_Score=98, Evalue=2e-21,
Organism=Escherichia coli, GI1787802, Length=164, Percent_Identity=32.9268292682927, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788085, Length=165, Percent_Identity=34.5454545454545, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI87081974, Length=151, Percent_Identity=29.8013245033113, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1787541, Length=161, Percent_Identity=31.055900621118, Blast_Score=80, Evalue=6e-16,
Organism=Escherichia coli, GI87081977, Length=220, Percent_Identity=26.3636363636364, Blast_Score=75, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 82062; Mature: 82062

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFPELQEHIEIFMNNENYIGYFRKFAVDTIEHDPHYVKNVMEYLLNISKELNYELAAHW
CCCCCHHHHHHEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
CLIYIGWCEQLECNFEKSIKLHLMSKEYFEKIKELEGVSVTCNALLVDYLKIGQFDLAII
HHEEEECHHHHCCCCCCCEEEEEECHHHHHHHHHHCCCEEEHHHHHHHHHHCCCHHHHHH
NALRGADIARKLGDKELTIILLLNISYAYVDSYNYNEAINILKKLKTYKNEFNFKHEILM
HHHHCHHHHHHCCCCCEEEEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHH
FMILAECALSINDLERTFDYATYALKIINENNTKIYKVELFSIIADVLYRKNEECKAIKL
HHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCEEEEEHHHHHHHHHHHCCCCCHHHHHH
FEKSLEILKQDDNYLRAKILIRWGQCSLYNENYILAEKKFLECLNLLEETNFITLESKVY
HHHHHHHHHCCCCEEEEEEEEEECCEEEECCCEEEHHHHHHHHHHHHHHCCEEEEHHHHH
KELSTIYEKLGKYKEAFEAMKDYVKYEKRVYDLHSSSWFSIFKYRNLEEKANVYRELYNK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHH
IERISEIGKEIISILDIDKLLYTIYIEVKKLIDTDIFGIALFNEHKNELDYKLFIENGDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCC
KNLCSISIDNRNSFGVYCFKSKKEILINNIENEYVKYVKKFDVNKYKNAPYSIMYIPIII
CCEEEEEECCCCCEEEEEECCCCHHHHHCHHHHHHHHHHHHCCHHCCCCCEEEEEEEEEE
KNKSIGVISVQSYRKNAYTRNELNELKILSSYIAIALQNGKTFNTVEHFAKYDSLTGMFN
ECCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHC
RNVILTQGERIFNNKLETKQTFSIIMIDVDYFKQINDRYGHDIGDIVLRDISSIIKSEIR
CCEEEECCCHHHCCCCCCCCEEEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
NTDSLGRYGGEEFLILLPNINLEEAKKIADRIRKSVENYKYHYLTSEKHNRVTLSLGVYE
CCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEEEE
FNKNEFDFFEGVKKADKALYMAKSLGRNRAIEYSG
ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCC
>Mature Secondary Structure
MKFPELQEHIEIFMNNENYIGYFRKFAVDTIEHDPHYVKNVMEYLLNISKELNYELAAHW
CCCCCHHHHHHEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
CLIYIGWCEQLECNFEKSIKLHLMSKEYFEKIKELEGVSVTCNALLVDYLKIGQFDLAII
HHEEEECHHHHCCCCCCCEEEEEECHHHHHHHHHHCCCEEEHHHHHHHHHHCCCHHHHHH
NALRGADIARKLGDKELTIILLLNISYAYVDSYNYNEAINILKKLKTYKNEFNFKHEILM
HHHHCHHHHHHCCCCCEEEEEEEECCEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHH
FMILAECALSINDLERTFDYATYALKIINENNTKIYKVELFSIIADVLYRKNEECKAIKL
HHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCEEEEEHHHHHHHHHHHCCCCCHHHHHH
FEKSLEILKQDDNYLRAKILIRWGQCSLYNENYILAEKKFLECLNLLEETNFITLESKVY
HHHHHHHHHCCCCEEEEEEEEEECCEEEECCCEEEHHHHHHHHHHHHHHCCEEEEHHHHH
KELSTIYEKLGKYKEAFEAMKDYVKYEKRVYDLHSSSWFSIFKYRNLEEKANVYRELYNK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHH
IERISEIGKEIISILDIDKLLYTIYIEVKKLIDTDIFGIALFNEHKNELDYKLFIENGDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCC
KNLCSISIDNRNSFGVYCFKSKKEILINNIENEYVKYVKKFDVNKYKNAPYSIMYIPIII
CCEEEEEECCCCCEEEEEECCCCHHHHHCHHHHHHHHHHHHCCHHCCCCCEEEEEEEEEE
KNKSIGVISVQSYRKNAYTRNELNELKILSSYIAIALQNGKTFNTVEHFAKYDSLTGMFN
ECCCCEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHC
RNVILTQGERIFNNKLETKQTFSIIMIDVDYFKQINDRYGHDIGDIVLRDISSIIKSEIR
CCEEEECCCHHHCCCCCCCCEEEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
NTDSLGRYGGEEFLILLPNINLEEAKKIADRIRKSVENYKYHYLTSEKHNRVTLSLGVYE
CCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEEEE
FNKNEFDFFEGVKKADKALYMAKSLGRNRAIEYSG
ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA