| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is lytB [H]
Identifier: 187932658
GI number: 187932658
Start: 3364202
End: 3365635
Strand: Reverse
Name: lytB [H]
Synonym: CLL_A3223
Alternate gene names: 187932658
Gene position: 3365635-3364202 (Counterclockwise)
Preceding gene: 187935050
Following gene: 187935043
Centisome position: 88.56
GC content: 25.94
Gene sequence:
>1434_bases ATGAGTTTGAAGAAATTTTTTAGAAATGTTATTATGTCATTTTTAGTTATTGGTATATTTGTAATATTGGAACCGTCGAA ATATCTGAATTTAACTAATAAAAAAGTATACGCTGCTAGTAAAGTATATTTAGATAATATATATTTAAGTGACAAATACG ATATTGATTTTTCTAAGAAAAAGTATTCGTATATTTTAGATGTTGATAAATCACTTAAAGAAATAGTAGTGAGAGCTAGA CCAGAAGATTATAACGATATAGTTAAAATTAATGGAAAAGTGATAACAAGGGATGATAAATATAGAGAATTAGTACCCTT AGAAATTGGAAAAAATAAAATTGAAATAGAAGTTAAAGATAATGATAGTGCTATGACATCTACATATACTTTGTATATAT ACAGAGGTGGAAATGAAAGCAACTATTTATTAGATGATATAAATATTGATTCAAGTAATATTGGTTTTAAGAAAGATAGA AATTCATATAATATAGAAATTGATGATGATACATCTAAAGTTGTACTTAAAGCAATAACAAAGGATAAAAATTATAAAGT AATTGTTAATGGGACTGAACTTGATTATCCGAATCTTATTAGAATAAGATTTAGTGGAATTGGGAAATATGAAATTAAAA TTAAAGTTATTGATCCTGAAACAAATAGATTTAAGGAATATAATTTAGATATGTATGTAGGTATTCCAATATCTCCGGAT ATATCTAATTCTGTAAATTCAGTTGTAAAACCTAATCAATGGGTAATGGTGAATGGAAGATGGAGATATAATGATTCATT AGGAGAACCTATAAAAGATAAATGGTTTTTTGATAAAAAATATAATAACTATTTTTACTTTAATAACAGGGGAAATATGA GGACAGGCTGGTTTTCTATTGATGGTGAATGGTATTATGCATCTATTAATGGAGAAAGGCAAACAGGGTGGCTTTTAGAG GATAATGAATGGTATTATTTTGATTATGATGGCAAAATGCGAACAGATTGGATTCAATATAAAGACAAGTGGTATTTTTT AGATTCAATTGGAGCTATGCAAACAGGATGGATTTGTGATAATGGTAATTGGTATATTTTAAATAATAATGGTGAAATGA TTACTGGTTGGATAACATATAATAATAATAGATATTTTCTAAAAAATAACGGACAAATGGCAGTAGGATGGTTTAATAAT GAAAATGAATGGTACTATTTTAATGCTAATGGAAGCATGAAAAGTGGAGAATGGTTATTTTATAGAGATAATTGGTATTA TATAAACTATATTGGTACAATGAGAACAGGATGGTTATATAAAGACGATAAATATTATTACTTCAATGAAGATGGAACAA TGAGTACGACTACTAAAACAATAGATGGGTATACTTATAATTTTAATAAAGATGGTTCAGTAAATTTTAACTGA
Upstream 100 bases:
>100_bases AATTTCTAAACATTAATATTATCTTAAGCTAATGTTAATTTACTATCAATGTTTAAAATGGTAAAATTAAAAGTACTAAA ATATTTAGAGGGATGGTGAG
Downstream 100 bases:
>100_bases TTTGTGTATTGACTTAATGATTTGATATGGAGGTTAACTGTTTATGAAGTTTCCTGAATTACAAGAACATATTGAGATTT TTATGAATAATGAAAATTAT
Product: surface protein PspC
Products: NA
Alternate protein names: Murein hydrolase [H]
Number of amino acids: Translated: 477; Mature: 476
Protein sequence:
>477_residues MSLKKFFRNVIMSFLVIGIFVILEPSKYLNLTNKKVYAASKVYLDNIYLSDKYDIDFSKKKYSYILDVDKSLKEIVVRAR PEDYNDIVKINGKVITRDDKYRELVPLEIGKNKIEIEVKDNDSAMTSTYTLYIYRGGNESNYLLDDINIDSSNIGFKKDR NSYNIEIDDDTSKVVLKAITKDKNYKVIVNGTELDYPNLIRIRFSGIGKYEIKIKVIDPETNRFKEYNLDMYVGIPISPD ISNSVNSVVKPNQWVMVNGRWRYNDSLGEPIKDKWFFDKKYNNYFYFNNRGNMRTGWFSIDGEWYYASINGERQTGWLLE DNEWYYFDYDGKMRTDWIQYKDKWYFLDSIGAMQTGWICDNGNWYILNNNGEMITGWITYNNNRYFLKNNGQMAVGWFNN ENEWYYFNANGSMKSGEWLFYRDNWYYINYIGTMRTGWLYKDDKYYYFNEDGTMSTTTKTIDGYTYNFNKDGSVNFN
Sequences:
>Translated_477_residues MSLKKFFRNVIMSFLVIGIFVILEPSKYLNLTNKKVYAASKVYLDNIYLSDKYDIDFSKKKYSYILDVDKSLKEIVVRAR PEDYNDIVKINGKVITRDDKYRELVPLEIGKNKIEIEVKDNDSAMTSTYTLYIYRGGNESNYLLDDINIDSSNIGFKKDR NSYNIEIDDDTSKVVLKAITKDKNYKVIVNGTELDYPNLIRIRFSGIGKYEIKIKVIDPETNRFKEYNLDMYVGIPISPD ISNSVNSVVKPNQWVMVNGRWRYNDSLGEPIKDKWFFDKKYNNYFYFNNRGNMRTGWFSIDGEWYYASINGERQTGWLLE DNEWYYFDYDGKMRTDWIQYKDKWYFLDSIGAMQTGWICDNGNWYILNNNGEMITGWITYNNNRYFLKNNGQMAVGWFNN ENEWYYFNANGSMKSGEWLFYRDNWYYINYIGTMRTGWLYKDDKYYYFNEDGTMSTTTKTIDGYTYNFNKDGSVNFN >Mature_476_residues SLKKFFRNVIMSFLVIGIFVILEPSKYLNLTNKKVYAASKVYLDNIYLSDKYDIDFSKKKYSYILDVDKSLKEIVVRARP EDYNDIVKINGKVITRDDKYRELVPLEIGKNKIEIEVKDNDSAMTSTYTLYIYRGGNESNYLLDDINIDSSNIGFKKDRN SYNIEIDDDTSKVVLKAITKDKNYKVIVNGTELDYPNLIRIRFSGIGKYEIKIKVIDPETNRFKEYNLDMYVGIPISPDI SNSVNSVVKPNQWVMVNGRWRYNDSLGEPIKDKWFFDKKYNNYFYFNNRGNMRTGWFSIDGEWYYASINGERQTGWLLED NEWYYFDYDGKMRTDWIQYKDKWYFLDSIGAMQTGWICDNGNWYILNNNGEMITGWITYNNNRYFLKNNGQMAVGWFNNE NEWYYFNANGSMKSGEWLFYRDNWYYINYIGTMRTGWLYKDDKYYYFNEDGTMSTTTKTIDGYTYNFNKDGSVNFN
Specific function: Plays an important role in cell wall degradation and cell separation [H]
COG id: COG5263
COG function: function code R; FOG: Glucan-binding domain (YG repeat)
Gene ontology:
Cell location: Secreted [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 15 cell wall-binding repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018337 - InterPro: IPR013338 - InterPro: IPR002901 [H]
Pfam domain/function: PF01473 CW_binding_1; PF01832 Glucosaminidase [H]
EC number: =3.2.1.96 [H]
Molecular weight: Translated: 56818; Mature: 56687
Theoretical pI: Translated: 5.48; Mature: 5.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLKKFFRNVIMSFLVIGIFVILEPSKYLNLTNKKVYAASKVYLDNIYLSDKYDIDFSKK CCHHHHHHHHHHHHHHHEEEEEECCHHHEEECCCEEEEEEEEEEEEEEECCEECCCCCCC KYSYILDVDKSLKEIVVRARPEDYNDIVKINGKVITRDDKYRELVPLEIGKNKIEIEVKD EEEEEEECCCCHHHHEEECCCCCCCCEEEECCEEEECCCCCCEEEEEEECCCEEEEEECC NDSAMTSTYTLYIYRGGNESNYLLDDINIDSSNIGFKKDRNSYNIEIDDDTSKVVLKAIT CCCCEEEEEEEEEEECCCCCCEEEEEEECCCCCCCEEECCCEEEEEECCCCCEEEEEEEC KDKNYKVIVNGTELDYPNLIRIRFSGIGKYEIKIKVIDPETNRFKEYNLDMYVGIPISPD CCCCEEEEEECCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCEEEEEEECCCC ISNSVNSVVKPNQWVMVNGRWRYNDSLGEPIKDKWFFDKKYNNYFYFNNRGNMRTGWFSI CCCCHHHHCCCCCEEEECCEEEECCCCCCCCCCCEEEEEECCCEEEECCCCCEEEEEEEE DGEWYYASINGERQTGWLLEDNEWYYFDYDGKMRTDWIQYKDKWYFLDSIGAMQTGWICD CCCEEEEEECCCCCCCEEEECCCEEEEEECCCEEEEEEEECCEEEEEECCCCCEECEEEE NGNWYILNNNGEMITGWITYNNNRYFLKNNGQMAVGWFNNENEWYYFNANGSMKSGEWLF CCCEEEEECCCCEEEEEEEECCCEEEEECCCEEEEEEECCCCCEEEECCCCCCCCCCEEE YRDNWYYINYIGTMRTGWLYKDDKYYYFNEDGTMSTTTKTIDGYTYNFNKDGSVNFN EECCEEEEEEEECCEECEEEECCEEEEECCCCCEEEEEEEECCEEEECCCCCCEECC >Mature Secondary Structure SLKKFFRNVIMSFLVIGIFVILEPSKYLNLTNKKVYAASKVYLDNIYLSDKYDIDFSKK CHHHHHHHHHHHHHHHEEEEEECCHHHEEECCCEEEEEEEEEEEEEEECCEECCCCCCC KYSYILDVDKSLKEIVVRARPEDYNDIVKINGKVITRDDKYRELVPLEIGKNKIEIEVKD EEEEEEECCCCHHHHEEECCCCCCCCEEEECCEEEECCCCCCEEEEEEECCCEEEEEECC NDSAMTSTYTLYIYRGGNESNYLLDDINIDSSNIGFKKDRNSYNIEIDDDTSKVVLKAIT CCCCEEEEEEEEEEECCCCCCEEEEEEECCCCCCCEEECCCEEEEEECCCCCEEEEEEEC KDKNYKVIVNGTELDYPNLIRIRFSGIGKYEIKIKVIDPETNRFKEYNLDMYVGIPISPD CCCCEEEEEECCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCEEEECCEEEEEEECCCC ISNSVNSVVKPNQWVMVNGRWRYNDSLGEPIKDKWFFDKKYNNYFYFNNRGNMRTGWFSI CCCCHHHHCCCCCEEEECCEEEECCCCCCCCCCCEEEEEECCCEEEECCCCCEEEEEEEE DGEWYYASINGERQTGWLLEDNEWYYFDYDGKMRTDWIQYKDKWYFLDSIGAMQTGWICD CCCEEEEEECCCCCCCEEEECCCEEEEEECCCEEEEEEEECCEEEEEECCCCCEECEEEE NGNWYILNNNGEMITGWITYNNNRYFLKNNGQMAVGWFNNENEWYYFNANGSMKSGEWLF CCCEEEEECCCCEEEEEEEECCCEEEEECCCEEEEEEECCCCCEEEECCCCCCCCCCEEE YRDNWYYINYIGTMRTGWLYKDDKYYYFNEDGTMSTTTKTIDGYTYNFNKDGSVNFN EECCEEEEEEEECCEECEEEECCEEEEECCCCCEEEEEEEECCEEEECCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10096093; 11544234 [H]