Click here to switch to the map view.

The map label for this gene is 187934800

Identifier: 187934800

GI number: 187934800

Start: 3532672

End: 3533958

Strand: Reverse

Name: 187934800

Synonym: CLL_A3350

Alternate gene names: NA

Gene position: 3533958-3532672 (Counterclockwise)

Preceding gene: 187932500

Following gene: 187933656

Centisome position: 92.99

GC content: 25.72

Gene sequence:

>1287_bases
ATGGAATTAGCATTTTATACATTAAGAGGGGTCGCAGGTGCAATAGTAAATCCAGGATTGATGATTGTACTAATTTTTTT
AGGGATAATATTATATTTTAAAAACAGAAGTTTAGTTATGATGCAAAGATTAATTCTAGGGGATAATATAAATACGCCCC
TAGAACTAACTTTATCACAAATTGTATTAGGAATAGTGGCGGGTGCAATAGGAAGTACTATACTTAGCATATTAGGAATA
AGATTTTGGGAAAATTCAGGTATAATATATTTATTTATGATTTCAATAATTTTAATGTTTGTAAAACCAAGATTTATATG
TTTTTCTTATTCTGGAGCTATATTAGGAGCTATAAGTATAGTAATTAGCCTATTATCAAATGTATTTCCGTCATTAAAGA
GTACTACAATTTTTAATATTGATATAATATATCTTATGACATTTATAGGTGTATTACATATTGTTGAAGGTTTTCTAGTT
ATGATAGATGGAGATAGAGGTTCAATTCCTATTTTTAGTAACAAAAATGGAAAAATAATAGGTGGGTTTTCTCTTAATAG
ATATTGGGTTTTATCTATAGCAATATTAATATTAACATTATCTAATAATGATACAAGCAATTACATAGCAACTACTATAT
CAACACCTAAAGGATGGCCATTTATAAGTGGAAATATAACCAATAATTTATTAGCATTAAGCACAATATCAATAATGCCA
CTTTATGCTGTAATAGGTTATTCATCAATTACATTTACAAAAAGTAAAAAAGAAAAAGCTGTTCACTCAGGACTTTCTAT
ATTATTTTATGGAATATGTTTAACTTTAATAGCTCAAATTGCAAGATTTGGACTTATTTTTGAAATAGTAGTAATAATAT
TTGCTCCATTTGCACATGAAATGATGTTAAAAATTCAAAGAGATAATGAAAATAAGCAAGAGCCTAAATTCATTAGTGAT
GAAGAGGGACTAGTTGTATTAGAAGTTGTTCCTAGAGGTATAGCGTATAATTTAGGAATAAAACCAGGAAATAAGTTAAT
CTCAGTGAATAATAGTGTTGTAAATTCTGAAGCAGATGTACTTATTATTTTAAAAGAAAATTTTTATAATGTTACTTTTA
AAATTAAAGATTTAAGTGGAATAATAAAAGAAATACCAGTTAAAACTAGTAAAGGTAAAAGACTTGGTATGCTTTTAGTT
CCAAGAACAATAAAAGAACAAGATAAAATATGTATAAAAGAAAACAAGTTTTCTAATATACTAAATAATGTAAAAGAAAA
ACATTAA

Upstream 100 bases:

>100_bases
CCTAAAGATTTATTTAAAGAAAAATATACTAGAGATATAGATCCACAATTTAATAAAGCTTTGCAGCTTATAACTGAAAA
GCTTAATTAGGGGGATTAAT

Downstream 100 bases:

>100_bases
TAGTTTTATCTTATAAGTTGAAAGCAGTTGATATTTTAGTGTAAAATAGCAACTATATGATATAAAGCCAGTAATTCTTA
TTGAATTTACTGGCTTTTTG

Product: hypothetical protein

Products: NA

Alternate protein names: C-Terminal PDZ Domain-Containing Protein; PDZ/DHR/GLGF Domain-Containing Protein; Pological Determinant; Serine Protease; Trypsin-Like Serine Protease; Pdz/Dhr/Glgf Domain Protein; Membrane Spanning Protein

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MELAFYTLRGVAGAIVNPGLMIVLIFLGIILYFKNRSLVMMQRLILGDNINTPLELTLSQIVLGIVAGAIGSTILSILGI
RFWENSGIIYLFMISIILMFVKPRFICFSYSGAILGAISIVISLLSNVFPSLKSTTIFNIDIIYLMTFIGVLHIVEGFLV
MIDGDRGSIPIFSNKNGKIIGGFSLNRYWVLSIAILILTLSNNDTSNYIATTISTPKGWPFISGNITNNLLALSTISIMP
LYAVIGYSSITFTKSKKEKAVHSGLSILFYGICLTLIAQIARFGLIFEIVVIIFAPFAHEMMLKIQRDNENKQEPKFISD
EEGLVVLEVVPRGIAYNLGIKPGNKLISVNNSVVNSEADVLIILKENFYNVTFKIKDLSGIIKEIPVKTSKGKRLGMLLV
PRTIKEQDKICIKENKFSNILNNVKEKH

Sequences:

>Translated_428_residues
MELAFYTLRGVAGAIVNPGLMIVLIFLGIILYFKNRSLVMMQRLILGDNINTPLELTLSQIVLGIVAGAIGSTILSILGI
RFWENSGIIYLFMISIILMFVKPRFICFSYSGAILGAISIVISLLSNVFPSLKSTTIFNIDIIYLMTFIGVLHIVEGFLV
MIDGDRGSIPIFSNKNGKIIGGFSLNRYWVLSIAILILTLSNNDTSNYIATTISTPKGWPFISGNITNNLLALSTISIMP
LYAVIGYSSITFTKSKKEKAVHSGLSILFYGICLTLIAQIARFGLIFEIVVIIFAPFAHEMMLKIQRDNENKQEPKFISD
EEGLVVLEVVPRGIAYNLGIKPGNKLISVNNSVVNSEADVLIILKENFYNVTFKIKDLSGIIKEIPVKTSKGKRLGMLLV
PRTIKEQDKICIKENKFSNILNNVKEKH
>Mature_428_residues
MELAFYTLRGVAGAIVNPGLMIVLIFLGIILYFKNRSLVMMQRLILGDNINTPLELTLSQIVLGIVAGAIGSTILSILGI
RFWENSGIIYLFMISIILMFVKPRFICFSYSGAILGAISIVISLLSNVFPSLKSTTIFNIDIIYLMTFIGVLHIVEGFLV
MIDGDRGSIPIFSNKNGKIIGGFSLNRYWVLSIAILILTLSNNDTSNYIATTISTPKGWPFISGNITNNLLALSTISIMP
LYAVIGYSSITFTKSKKEKAVHSGLSILFYGICLTLIAQIARFGLIFEIVVIIFAPFAHEMMLKIQRDNENKQEPKFISD
EEGLVVLEVVPRGIAYNLGIKPGNKLISVNNSVVNSEADVLIILKENFYNVTFKIKDLSGIIKEIPVKTSKGKRLGMLLV
PRTIKEQDKICIKENKFSNILNNVKEKH

Specific function: Unknown

COG id: COG0265

COG function: function code O; Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47425; Mature: 47425

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELAFYTLRGVAGAIVNPGLMIVLIFLGIILYFKNRSLVMMQRLILGDNINTPLELTLSQ
CCEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHH
IVLGIVAGAIGSTILSILGIRFWENSGIIYLFMISIILMFVKPRFICFSYSGAILGAISI
HHHHHHHHHHHHHHHHHHHHEEECCCCEEHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
VISLLSNVFPSLKSTTIFNIDIIYLMTFIGVLHIVEGFLVMIDGDRGSIPIFSNKNGKII
HHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEECCCCCEE
GGFSLNRYWVLSIAILILTLSNNDTSNYIATTISTPKGWPFISGNITNNLLALSTISIMP
EECCCCHHHHHHHHHHHEEECCCCCCCEEEEEECCCCCCCEEECCCCCCCHHHHHHHHHH
LYAVIGYSSITFTKSKKEKAVHSGLSILFYGICLTLIAQIARFGLIFEIVVIIFAPFAHE
HHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MMLKIQRDNENKQEPKFISDEEGLVVLEVVPRGIAYNLGIKPGNKLISVNNSVVNSEADV
HHHEEECCCCCCCCCCCCCCCCCEEEEEEECCCEEEECCCCCCCEEEEECCCEECCCCCE
LIILKENFYNVTFKIKDLSGIIKEIPVKTSKGKRLGMLLVPRTIKEQDKICIKENKFSNI
EEEEECCCEEEEEEEEHHHHHHHHCCCCCCCCCEEEEEECCCHHCCCCCEEEECCHHHHH
LNNVKEKH
HHHHHCCC
>Mature Secondary Structure
MELAFYTLRGVAGAIVNPGLMIVLIFLGIILYFKNRSLVMMQRLILGDNINTPLELTLSQ
CCEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHH
IVLGIVAGAIGSTILSILGIRFWENSGIIYLFMISIILMFVKPRFICFSYSGAILGAISI
HHHHHHHHHHHHHHHHHHHHEEECCCCEEHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
VISLLSNVFPSLKSTTIFNIDIIYLMTFIGVLHIVEGFLVMIDGDRGSIPIFSNKNGKII
HHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEECCCCCEE
GGFSLNRYWVLSIAILILTLSNNDTSNYIATTISTPKGWPFISGNITNNLLALSTISIMP
EECCCCHHHHHHHHHHHEEECCCCCCCEEEEEECCCCCCCEEECCCCCCCHHHHHHHHHH
LYAVIGYSSITFTKSKKEKAVHSGLSILFYGICLTLIAQIARFGLIFEIVVIIFAPFAHE
HHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MMLKIQRDNENKQEPKFISDEEGLVVLEVVPRGIAYNLGIKPGNKLISVNNSVVNSEADV
HHHEEECCCCCCCCCCCCCCCCCEEEEEEECCCEEEECCCCCCCEEEEECCCEECCCCCE
LIILKENFYNVTFKIKDLSGIIKEIPVKTSKGKRLGMLLVPRTIKEQDKICIKENKFSNI
EEEEECCCEEEEEEEEHHHHHHHHCCCCCCCCCEEEEEECCCHHCCCCCEEEECCHHHHH
LNNVKEKH
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA