| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is toxB [H]
Identifier: 187934411
GI number: 187934411
Start: 3419858
End: 3421960
Strand: Reverse
Name: toxB [H]
Synonym: CLL_A3260
Alternate gene names: 187934411
Gene position: 3421960-3419858 (Counterclockwise)
Preceding gene: 187935162
Following gene: 187932886
Centisome position: 90.04
GC content: 27.82
Gene sequence:
>2103_bases ATGCAGGAAATTTTTGAGGGAGGGATTGTTATTTTTAATTTACAGAAAAAAGTTATAGTACTAATTATGGCTACAACATT TATAAGTGGTATTTTTCCTAATGTAAATGCATATGCGGCTACAAGTGATCTTTCTAAGTCACAAAAAAATAGCTCATTAG AAAATAAATCATCAAAAGTTAAAGAACAAGAAAATAATGCTGAAGAGAATAAATCAGAAGAAAAGAATTCACAAAAAAAT AATTTGAAAGAGGACAAGTTATCTGAAAGTGATTCAAAAGAACAGGATTTAAAAGAAGATGCTGATGAGATTCTAGATCA AGAAGAAAAAGCTCCAGAACCAGGATGGCATGTTATTAATGGAAAAAGATTTTACTTTACCGAAGATGGAATGTTAGAAA AAAAGGGTTGGTTTGAAATAGAGGAATACATATATAAAGGAACGGAATCTAATCCTAAAGTATATGAACCAATTCTAAAG AAAAAAGAACAAACAAATTCTAAAGTTAATAAAGATAAAAAAGATAAAGATAAAACTGATTTAAAATCTGAAGATAAAAT AGAAGATAAAGAATCTAAGAAGAATATAAAAGATTCAGAAAAAGTAGAAAAAGATAATAAAGAGAAGGAAGAAGATAACT CTCTTGAAAATAATGAAGAAAATGATGAGATTGATTCAAACAGTACAAGCTCTAAAGAAGATGAGTATGAAGTGGTAGAT CCTAGTAAGGATTCTAATTACGTGCTTCATAAAAATACTTATTATTTTAATGATGATCATTCAGTTACTACTGGATGGAA AGATTTTAGTGGTAAATGGTACAATTTTAATGAATATGGTGCAATGAGAACTAATTGGAACTATATAGATTATAAATGGT ATTATTTAGATGAACATGGAGAGATGCAAAGAGGATGGCTAGAAGTAGGGCCTAATAAATATTATTTATATAGCACAGGG GAAATGGCTAGTGGAAAGATGAATATAGATGATAAATGGTACTATTTTAATGGAAGTGGAATATTGCAAACAGGATTCTA TACAAAAGATGGTAAGCAATGTTACTCTAATAAAAATGGTGAAATGTTATCTAATGAATGGATAGAGAATAACGATAAAA AATATTATGTTAAAGCAAACGGAGAATTAGCAATAGGTAATATAATTATAGATGGTGAGGGCGAAAGCTTTACTGATAGT GGTTTATATAAAGGTGGCGGAAAAATAGATGAGTATCTTTATGTAGAATATTTAGATGTCGGAAATGCAGATTGTATATT TATAAAACTTCCTAATGGAGAAACTGCATTAATTGATACTGGATTAAATACAAAAGATAGTGAGAATAAAGTAATAGACT TTTTAGAAAATCAAAATATGAAAGAAGATAAGGATGATAAAAAAATAATAAATCATGTTATAATAACTCATCCTCATTCA GATCATATTGGAGGTTTATATAAAATTCTTAAGAATTTTAATGTAGAAAAAATATATATGCCAGAAAGAAGTTATTTAGA AGATTGTTTAGATTTAGAGGAATCTGGATCAGAATCTGGTGATATCAAGATTATGAAAGAAGACTACAGAGTATTTAAAA AGACTATGGATTTAATAGAAGATCTTGATATAGAAGTTATAAATGCAGTTAAGGGACAAGATATTGATGAAGATGGTATC TTAAAATTTGTTAATAGAGATGTTTACTATGCAAAACCTCTTGATGAAAGAGTCTCAGCTAATTATTGGGAAATAAATAA TCAATCAGCTGTAGTATATTTAAATTATAATGATTTAGGTGCATTATTTACTGGTGATATAGAATGGTTAGCAGAAAAGG ATATTATTGAATCAGATCTTTTAGCACATTCAAAAGTAGACGTATTAAAAGTTCCACATCATGGAATAAATACATCTTCA AGCTATGCTTTTGTAAATTACGTTGGAGCAGATATTGGTATAATTCCTAGAGAAACTAATCAAATAATGAAAAATGGTGC TTACACTAATTTAATAACAGGTAGAGTAACTTTATTTGAAACAGGACTTAAAGATGGAGTTTCATTATATGCAACAAAAG ATGGATGGAATGTTCAATATTAA
Upstream 100 bases:
>100_bases ATTTAATGATATTTTAATAAAAAATTACATGACAATTTAATAATATTGCTACAAAAACTGCATATTAATTTGAGAAAATA TTCTAATAAGGGTATAATAT
Downstream 100 bases:
>100_bases AATTATATTTATTACAAAGTTGATATATGTATAAGCAAGTGGACTTAGTAATTGAATTTAGGAATGATAAAATAAGCATA GTCTAATAAAAAACAGAGTA
Product: surface protein PspC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 700; Mature: 700
Protein sequence:
>700_residues MQEIFEGGIVIFNLQKKVIVLIMATTFISGIFPNVNAYAATSDLSKSQKNSSLENKSSKVKEQENNAEENKSEEKNSQKN NLKEDKLSESDSKEQDLKEDADEILDQEEKAPEPGWHVINGKRFYFTEDGMLEKKGWFEIEEYIYKGTESNPKVYEPILK KKEQTNSKVNKDKKDKDKTDLKSEDKIEDKESKKNIKDSEKVEKDNKEKEEDNSLENNEENDEIDSNSTSSKEDEYEVVD PSKDSNYVLHKNTYYFNDDHSVTTGWKDFSGKWYNFNEYGAMRTNWNYIDYKWYYLDEHGEMQRGWLEVGPNKYYLYSTG EMASGKMNIDDKWYYFNGSGILQTGFYTKDGKQCYSNKNGEMLSNEWIENNDKKYYVKANGELAIGNIIIDGEGESFTDS GLYKGGGKIDEYLYVEYLDVGNADCIFIKLPNGETALIDTGLNTKDSENKVIDFLENQNMKEDKDDKKIINHVIITHPHS DHIGGLYKILKNFNVEKIYMPERSYLEDCLDLEESGSESGDIKIMKEDYRVFKKTMDLIEDLDIEVINAVKGQDIDEDGI LKFVNRDVYYAKPLDERVSANYWEINNQSAVVYLNYNDLGALFTGDIEWLAEKDIIESDLLAHSKVDVLKVPHHGINTSS SYAFVNYVGADIGIIPRETNQIMKNGAYTNLITGRVTLFETGLKDGVSLYATKDGWNVQY
Sequences:
>Translated_700_residues MQEIFEGGIVIFNLQKKVIVLIMATTFISGIFPNVNAYAATSDLSKSQKNSSLENKSSKVKEQENNAEENKSEEKNSQKN NLKEDKLSESDSKEQDLKEDADEILDQEEKAPEPGWHVINGKRFYFTEDGMLEKKGWFEIEEYIYKGTESNPKVYEPILK KKEQTNSKVNKDKKDKDKTDLKSEDKIEDKESKKNIKDSEKVEKDNKEKEEDNSLENNEENDEIDSNSTSSKEDEYEVVD PSKDSNYVLHKNTYYFNDDHSVTTGWKDFSGKWYNFNEYGAMRTNWNYIDYKWYYLDEHGEMQRGWLEVGPNKYYLYSTG EMASGKMNIDDKWYYFNGSGILQTGFYTKDGKQCYSNKNGEMLSNEWIENNDKKYYVKANGELAIGNIIIDGEGESFTDS GLYKGGGKIDEYLYVEYLDVGNADCIFIKLPNGETALIDTGLNTKDSENKVIDFLENQNMKEDKDDKKIINHVIITHPHS DHIGGLYKILKNFNVEKIYMPERSYLEDCLDLEESGSESGDIKIMKEDYRVFKKTMDLIEDLDIEVINAVKGQDIDEDGI LKFVNRDVYYAKPLDERVSANYWEINNQSAVVYLNYNDLGALFTGDIEWLAEKDIIESDLLAHSKVDVLKVPHHGINTSS SYAFVNYVGADIGIIPRETNQIMKNGAYTNLITGRVTLFETGLKDGVSLYATKDGWNVQY >Mature_700_residues MQEIFEGGIVIFNLQKKVIVLIMATTFISGIFPNVNAYAATSDLSKSQKNSSLENKSSKVKEQENNAEENKSEEKNSQKN NLKEDKLSESDSKEQDLKEDADEILDQEEKAPEPGWHVINGKRFYFTEDGMLEKKGWFEIEEYIYKGTESNPKVYEPILK KKEQTNSKVNKDKKDKDKTDLKSEDKIEDKESKKNIKDSEKVEKDNKEKEEDNSLENNEENDEIDSNSTSSKEDEYEVVD PSKDSNYVLHKNTYYFNDDHSVTTGWKDFSGKWYNFNEYGAMRTNWNYIDYKWYYLDEHGEMQRGWLEVGPNKYYLYSTG EMASGKMNIDDKWYYFNGSGILQTGFYTKDGKQCYSNKNGEMLSNEWIENNDKKYYVKANGELAIGNIIIDGEGESFTDS GLYKGGGKIDEYLYVEYLDVGNADCIFIKLPNGETALIDTGLNTKDSENKVIDFLENQNMKEDKDDKKIINHVIITHPHS DHIGGLYKILKNFNVEKIYMPERSYLEDCLDLEESGSESGDIKIMKEDYRVFKKTMDLIEDLDIEVINAVKGQDIDEDGI LKFVNRDVYYAKPLDERVSANYWEINNQSAVVYLNYNDLGALFTGDIEWLAEKDIIESDLLAHSKVDVLKVPHHGINTSS SYAFVNYVGADIGIIPRETNQIMKNGAYTNLITGRVTLFETGLKDGVSLYATKDGWNVQY
Specific function: Cytotoxin [H]
COG id: COG5263
COG function: function code R; FOG: Glucan-binding domain (YG repeat)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 18 cell wall-binding repeats [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018337 - InterPro: IPR007577 - InterPro: IPR020974 [H]
Pfam domain/function: PF01473 CW_binding_1; PF04488 Gly_transf_sug; PF11713 Peptidase_C80 [H]
EC number: NA
Molecular weight: Translated: 80545; Mature: 80545
Theoretical pI: Translated: 4.43; Mature: 4.43
Prosite motif: PS00136 SUBTILASE_ASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQEIFEGGIVIFNLQKKVIVLIMATTFISGIFPNVNAYAATSDLSKSQKNSSLENKSSKV CCCCCCCCEEEEECCCCEEEEHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCHHHHHHHH KEQENNAEENKSEEKNSQKNNLKEDKLSESDSKEQDLKEDADEILDQEEKAPEPGWHVIN HHHHCCCHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHCHHHCCCCCCCEEEC GKRFYFTEDGMLEKKGWFEIEEYIYKGTESNPKVYEPILKKKEQTNSKVNKDKKDKDKTD CEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHC LKSEDKIEDKESKKNIKDSEKVEKDNKEKEEDNSLENNEENDEIDSNSTSSKEDEYEVVD CCCCCCCCCHHHHCCCCHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEC PSKDSNYVLHKNTYYFNDDHSVTTGWKDFSGKWYNFNEYGAMRTNWNYIDYKWYYLDEHG CCCCCCEEEECCEEEECCCCCEECCCCCCCCCEECCCCCCCEECCCCEEEEEEEEECCCC EMQRGWLEVGPNKYYLYSTGEMASGKMNIDDKWYYFNGSGILQTGFYTKDGKQCYSNKNG CCCCCCEEECCCEEEEEECCCCCCCCCCCCCEEEEECCCCEEEECEECCCCHHHHCCCCC EMLSNEWIENNDKKYYVKANGELAIGNIIIDGEGESFTDSGLYKGGGKIDEYLYVEYLDV CEECCCHHCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEC GNADCIFIKLPNGETALIDTGLNTKDSENKVIDFLENQNMKEDKDDKKIINHVIITHPHS CCCCEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHCEEEEECCCC DHIGGLYKILKNFNVEKIYMPERSYLEDCLDLEESGSESGDIKIMKEDYRVFKKTMDLIE CHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHH DLDIEVINAVKGQDIDEDGILKFVNRDVYYAKPLDERVSANYWEINNQSAVVYLNYNDLG HCCHHEEHHHCCCCCCCCCHHHHHCCCEEEECCCHHHHCCCEEEECCCEEEEEEEECCCC ALFTGDIEWLAEKDIIESDLLAHSKVDVLKVPHHGINTSSSYAFVNYVGADIGIIPRETN EEEECCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEEEECCCCEECCCCHH QIMKNGAYTNLITGRVTLFETGLKDGVSLYATKDGWNVQY HHHHCCCEEEEEECEEEEEECCCCCCEEEEEECCCCCCCC >Mature Secondary Structure MQEIFEGGIVIFNLQKKVIVLIMATTFISGIFPNVNAYAATSDLSKSQKNSSLENKSSKV CCCCCCCCEEEEECCCCEEEEHHHHHHHHHCCCCCCCEEEHHHHHHHHHCCCHHHHHHHH KEQENNAEENKSEEKNSQKNNLKEDKLSESDSKEQDLKEDADEILDQEEKAPEPGWHVIN HHHHCCCHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHCHHHCCCCCCCEEEC GKRFYFTEDGMLEKKGWFEIEEYIYKGTESNPKVYEPILKKKEQTNSKVNKDKKDKDKTD CEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHC LKSEDKIEDKESKKNIKDSEKVEKDNKEKEEDNSLENNEENDEIDSNSTSSKEDEYEVVD CCCCCCCCCHHHHCCCCHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEC PSKDSNYVLHKNTYYFNDDHSVTTGWKDFSGKWYNFNEYGAMRTNWNYIDYKWYYLDEHG CCCCCCEEEECCEEEECCCCCEECCCCCCCCCEECCCCCCCEECCCCEEEEEEEEECCCC EMQRGWLEVGPNKYYLYSTGEMASGKMNIDDKWYYFNGSGILQTGFYTKDGKQCYSNKNG CCCCCCEEECCCEEEEEECCCCCCCCCCCCCEEEEECCCCEEEECEECCCCHHHHCCCCC EMLSNEWIENNDKKYYVKANGELAIGNIIIDGEGESFTDSGLYKGGGKIDEYLYVEYLDV CEECCCHHCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEC GNADCIFIKLPNGETALIDTGLNTKDSENKVIDFLENQNMKEDKDDKKIINHVIITHPHS CCCCEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHCEEEEECCCC DHIGGLYKILKNFNVEKIYMPERSYLEDCLDLEESGSESGDIKIMKEDYRVFKKTMDLIE CHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHH DLDIEVINAVKGQDIDEDGILKFVNRDVYYAKPLDERVSANYWEINNQSAVVYLNYNDLG HCCHHEEHHHCCCCCCCCCHHHHHCCCEEEECCCHHHHCCCEEEECCCEEEEEEEECCCC ALFTGDIEWLAEKDIIESDLLAHSKVDVLKVPHHGINTSSSYAFVNYVGADIGIIPRETN EEEECCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEEEECCCCEECCCCHH QIMKNGAYTNLITGRVTLFETGLKDGVSLYATKDGWNVQY HHHHCCCEEEEEECEEEEEECCCCCCEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2374729; 3384474; 1603068 [H]