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The map label for this gene is sgbU [H]

Identifier: 187935162

GI number: 187935162

Start: 3422332

End: 3423177

Strand: Reverse

Name: sgbU [H]

Synonym: CLL_A3261

Alternate gene names: 187935162

Gene position: 3423177-3422332 (Counterclockwise)

Preceding gene: 187935534

Following gene: 187934411

Centisome position: 90.08

GC content: 29.2

Gene sequence:

>846_bases
ATGAAAGAATATACATTAGGATTATATGAAAAATCAATGCCTAACTATTTGACGTGGGAAGAAAAGTTAAATTGTGCTAA
AGAATGTGGATTTGATACAATTGAAATAAGTATAGATGAAACAGAAGAAAAATTATCAAGATTAGATATGAGTATTGAAG
AAAGAAAAAATCTTGTAAATTTAATGTTTAAAACAGGTATTGGAATTAGGACGATGTGTCTTAGTGGACATAGAAAATAT
CCATTAGGAAGTTTGAATGAAGACACTAGAAATAGAGGAATTGATATAATGAAAAAAGCAGTGAATTTAGCCTCTGATCT
AGGAATAAGAATAATTCAGCTTGCTGGATATGATGTTTATTATGAAGAAGGAAATGATGAGACAAGAAAATACTTTGAAG
AAAATTTAAAGTTGTCTGTAGATATTGCTTCTAGCAAAGGAATAATACTTGCTTTTGAAACAATGGAGACAGAATTTATG
AACACTGTTGAAAAGGCAATGAAATTTGTTGAAATGGTTAATTCACCTTATCTTCAAGTTTATCCTGATTGCGGAAATGT
AAAAAATGCTAATTTAAATTATGGAACAACAGTTATAGATGATTTTGAAACTGGAAGAGGTCATATTGCAGCAGTACATT
TAAAAGAAACTGTGCCAGGAAAATTTAGAGAGATTACTTTTGGCACAGGGCATGTTAATTTTGAAGAAGTAATAAATAAA
TCTTGGGAACTTGGAGTAAGAAAGTTTACAGCAGAATTTTGGTATGTTGGTAATGAGGACTGGAAACAAGTTATTAAAGA
TACTAAAAAGTTTATGGATGAAAAGTTTAACCGTGTATTAAAATAA

Upstream 100 bases:

>100_bases
AATAATTTATAGTATTTTAAAATTTATAGTATGTAAGTAATAATAAAAGAAGGATGTCTATTAACAATTAAAAGATATTT
AAGAAAGTTGAGAGGATTGT

Downstream 100 bases:

>100_bases
AATTTAAGATAATATATTAAAATTAAATAAATATTAAATTAAATTAAATATTAAATTAAATTAAAAAAACGTGGTATCAG
CCACGTTTTTTGTTATTAGT

Product: L-xylulose 5-phosphate 3-epimerase

Products: NA

Alternate protein names: L-xylulose-5-phosphate 3-epimerase [H]

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MKEYTLGLYEKSMPNYLTWEEKLNCAKECGFDTIEISIDETEEKLSRLDMSIEERKNLVNLMFKTGIGIRTMCLSGHRKY
PLGSLNEDTRNRGIDIMKKAVNLASDLGIRIIQLAGYDVYYEEGNDETRKYFEENLKLSVDIASSKGIILAFETMETEFM
NTVEKAMKFVEMVNSPYLQVYPDCGNVKNANLNYGTTVIDDFETGRGHIAAVHLKETVPGKFREITFGTGHVNFEEVINK
SWELGVRKFTAEFWYVGNEDWKQVIKDTKKFMDEKFNRVLK

Sequences:

>Translated_281_residues
MKEYTLGLYEKSMPNYLTWEEKLNCAKECGFDTIEISIDETEEKLSRLDMSIEERKNLVNLMFKTGIGIRTMCLSGHRKY
PLGSLNEDTRNRGIDIMKKAVNLASDLGIRIIQLAGYDVYYEEGNDETRKYFEENLKLSVDIASSKGIILAFETMETEFM
NTVEKAMKFVEMVNSPYLQVYPDCGNVKNANLNYGTTVIDDFETGRGHIAAVHLKETVPGKFREITFGTGHVNFEEVINK
SWELGVRKFTAEFWYVGNEDWKQVIKDTKKFMDEKFNRVLK
>Mature_281_residues
MKEYTLGLYEKSMPNYLTWEEKLNCAKECGFDTIEISIDETEEKLSRLDMSIEERKNLVNLMFKTGIGIRTMCLSGHRKY
PLGSLNEDTRNRGIDIMKKAVNLASDLGIRIIQLAGYDVYYEEGNDETRKYFEENLKLSVDIASSKGIILAFETMETEFM
NTVEKAMKFVEMVNSPYLQVYPDCGNVKNANLNYGTTVIDDFETGRGHIAAVHLKETVPGKFREITFGTGHVNFEEVINK
SWELGVRKFTAEFWYVGNEDWKQVIKDTKKFMDEKFNRVLK

Specific function: Catalyzes the isomerization of L-xylulose-5-phosphate to L-ribulose-5-phosphate (Potential). May be involved in the utilization of 2,3-diketo-L-gulonate [H]

COG id: COG3623

COG function: function code G; Putative L-xylulose-5-phosphate 3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HUMPI family [H]

Homologues:

Organism=Escherichia coli, GI87082294, Length=261, Percent_Identity=46.360153256705, Blast_Score=247, Evalue=7e-67,
Organism=Escherichia coli, GI1790641, Length=262, Percent_Identity=44.2748091603053, Blast_Score=242, Evalue=2e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004560
- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: =5.1.3.22 [H]

Molecular weight: Translated: 32472; Mature: 32472

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEYTLGLYEKSMPNYLTWEEKLNCAKECGFDTIEISIDETEEKLSRLDMSIEERKNLVN
CCCCEECHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCHHHHHHHHH
LMFKTGIGIRTMCLSGHRKYPLGSLNEDTRNRGIDIMKKAVNLASDLGIRIIQLAGYDVY
HHHHCCCCEEEHEECCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCEEEEEEECCEEE
YEEGNDETRKYFEENLKLSVDIASSKGIILAFETMETEFMNTVEKAMKFVEMVNSPYLQV
EECCCHHHHHHHHHCCEEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEE
YPDCGNVKNANLNYGTTVIDDFETGRGHIAAVHLKETVPGKFREITFGTGHVNFEEVINK
ECCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCHHHHHCC
SWELGVRKFTAEFWYVGNEDWKQVIKDTKKFMDEKFNRVLK
HHHHHHHHEEEHEEECCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKEYTLGLYEKSMPNYLTWEEKLNCAKECGFDTIEISIDETEEKLSRLDMSIEERKNLVN
CCCCEECHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCHHHHHHHHH
LMFKTGIGIRTMCLSGHRKYPLGSLNEDTRNRGIDIMKKAVNLASDLGIRIIQLAGYDVY
HHHHCCCCEEEHEECCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCEEEEEEECCEEE
YEEGNDETRKYFEENLKLSVDIASSKGIILAFETMETEFMNTVEKAMKFVEMVNSPYLQV
EECCCHHHHHHHHHCCEEEEEEECCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEE
YPDCGNVKNANLNYGTTVIDDFETGRGHIAAVHLKETVPGKFREITFGTGHVNFEEVINK
ECCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCCHHHHHCC
SWELGVRKFTAEFWYVGNEDWKQVIKDTKKFMDEKFNRVLK
HHHHHHHHEEEHEEECCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]