| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is uvrA [H]
Identifier: 187934209
GI number: 187934209
Start: 3527480
End: 3530302
Strand: Reverse
Name: uvrA [H]
Synonym: CLL_A3348
Alternate gene names: 187934209
Gene position: 3530302-3527480 (Counterclockwise)
Preceding gene: 187933656
Following gene: 187935232
Centisome position: 92.89
GC content: 29.12
Gene sequence:
>2823_bases ATGAATGATAAGATAGTAATTAAAGGCGCAAAAGTTAATAATTTAAAAAATGTAAGTTTAGAAATACCAAGAGATAAATT AATAGTATTTACAGGATTATCAGGCTCTGGAAAATCCTCTTTAGCTTTTGATACATTATATGCAGAAGGACAAAGAAGGT ATGTTGAATCATTATCTTCTTATGCTAGGCAATTTTTAGGACAGATGGATAAGCCAGATGTTGAATATATAGAAGGATTA TCTCCAGCTATATCAATAGATCAAAAAACTACAAGTAAGAATCCAAGATCTACTGTTGGAACTATAACAGAAATATATGA CTATTTAAGATTACTATATGCAAGAGTAGGCATTCCACATTGTCCTAAGTGTGGTAAGGAAATTTCTAAACAATCTGTGG ATCAAATAGTGGATAAAATAATATCTTATGGGGATAAAACTAAAATTCAAATTTTAGCTCCAATAGTTCGTGGAAGAAAA GGAACTCATGAAAAGATATTAGAAAACATTAAAAAGAATGGTTTTATAAGAGCTAGAATTGATGGAGAAATGTATGATTT AACTGAAGAAGAGGTTAAACTAGATAAAAATAAAAAACATAATATTGAAGCTATTATAGATAGAATAGTAATAAAAGAAG ATATTGAAAAAAGAATTACTGATTCTATAGAAATGGCATTAAAGCTTGCTGATGGTTTAGTTATAGCTAATGTAGTTGGT AAAGAGGATATATTATTTAGTGAAAATTTTGCCTGCCCAGATTGTAGTGTTAGTATAGATGAATTAGCACCAAGACTATT TTCTTTTAACTCACCTTTTGGAAAATGTGATTGTTGCGATGGTTTAGGAACCTTATTTGAATTTGATGAAGATTTAGTTA TACCTAATAAAGAGTTAAGTATCATGGATGGTGCAGTTGCAAGCTGGGGGGCAGGTAGACTAAAAGAAGAATCGTGGACA TTTGCTATATTAAAAGCATTAGAAAGAGAATATGATTTACGACTTAATGTACCAATAAAAGATTTAAGTAAAGAAGAAGT GAATTTATTATTTTATGGTACAGGTGGAAAGAGGATCAAAGTTGATTATATAAAAGAAGGTGTAAAAGCTACTTATAATT ATTCTTATGATGGAGAGATAAATTCTTTAAAAAGAAGATATAGAGAGACTAACTCAGATTACATAAAGAATGAAATAGAA CAATACATGAGTGATAGTTATTGTCCTAAATGTAAAGGAGCAAGGTTAAAGAAAGAAGCCTTATCTGTTAAAGTGGGTGA AAAAAATATATATGAATTTACTACAATGCCAATAAATGAAGAACTAGAATTTTTAAATAGTTTAGAATTTTCACCTAAAA ATAAGATAATAAGTGAGCAGGTAGTAAAAGAGATTAGAAATAGACTTCAGTTTTTACTTGATGTGGGATTAGATTATTTA AATTTATCAAGAAAAGCTGGTACTTTATCAGGTGGAGAATCTCAAAGAATAAGATTAGCAACACAAATTGGATCATCACT TATGGGCGTGTTATATATACTAGATGAACCTAGTATAGGCTTACATCAAAGAGATAATGATAGACTTATAAGTACCTTGA AAAATTTAAGAGATGTAGGAAATACAGTTATTGTAGTTGAACATGATGAAGATACAATAATGGAAGCTGATTGTATTGTT GATATTGGACCAAGAGCAGGAGAACATGGCGGAGAAGTCGTTGCAGTAGGAACTATAGATGAAATTAAATCATGTAAAGA ATCAATAACAGGTCAATATTTAAGAGGTGAAAAGTGTGTTGAAGTTCCTAAGGAAAGAAGAAAAGGAAATGGAAAAGAGA TAAAGGTAATAGGTGCAAAGGAAAATAATTTAAAGAATGTAACTGCAACAATTCCATTAGAGACTTTAACAATAGTAACA GGAGTTTCAGGATCAGGAAAAAGTACATTTGTTAATGAAATATTATATAAAGGATTAAATAGATTAATAAATAAAAGTAA AAATCCAATAGGAAACCACAAAGAGATATTAGGTTATGAAAATATAGATAAAATCATAGATATAGATCAAAGCCCAATAG GAAGAACTCCAAGATCAAATCCTGCAACTTATACAGGAACTTTTGATGTAATAAGAGAATTATTTTCTCAAACTAATGAA GCTAAAATGAGAGGGTATAATCAAGGAAGATTTAGTTTTAATGTTAAAGGTGGAAGATGTGAAGCTTGTTCTGGTGATGG GATAATAAAAATTGAAATGCAATTTTTATCAGATGTTTATGTACCTTGTGAAGTATGTAAAGGAAAAAGATATAATAGAG AAACTTTAGAGGTAAAATACAAAGGTAAGAATATAGATGATATTTTAAATATGACTGTAGAAGAAGCATTGGAATTCTTT GAAAATATACCAAGAATAAAGAATAAATTAAAAACATTAAATGATGTTGGATTAGGATATATTAGATTGGGTCAACCATC CACTCAATTATCAGGTGGAGAAGCGCAAAGAATTAAACTTGCATCAGAGCTTTCAAAAAGAAGCACAGGAAAAACATTGT ATATTCTAGATGAACCAACAACTGGTTTACATATAGATGATGTTAATAGACTTATAGAAATATTACAAAGATTAGTTGAT GCAGGTAATACAGTTGTTGTTATTGAGCATAATATAGATATGATAAAATGTGCTGATTATCTAATAGATTTAGGTCCAGA GGGTGGAGATAAAGGAGGAACTATTGTAAAAACAGGAACACCAGAACAAATAAGTAAATGTGATAAATCATATACAGGTA AGTATTTAAAGAAATTGTTGTAA
Upstream 100 bases:
>100_bases TATACAGACGAAATGAAGCTTGCAGCTAAAAATCTTCAATTTGAAAGAGCAGCACAGTTAAGAGATAAGATAGAAGAATT GAAAGGAAAAGAGTGATTAG
Downstream 100 bases:
>100_bases TCATATAAAATAAACTTGCATATAAGAATAAAGCATGAATAAAATCATATAAATTATTTGTAAAAATTATCTTTCTAAAG AATAATTTAGGTAAATTATT
Product: excinuclease ABC subunit A
Products: NA
Alternate protein names: UvrA protein; Excinuclease ABC subunit A [H]
Number of amino acids: Translated: 940; Mature: 940
Protein sequence:
>940_residues MNDKIVIKGAKVNNLKNVSLEIPRDKLIVFTGLSGSGKSSLAFDTLYAEGQRRYVESLSSYARQFLGQMDKPDVEYIEGL SPAISIDQKTTSKNPRSTVGTITEIYDYLRLLYARVGIPHCPKCGKEISKQSVDQIVDKIISYGDKTKIQILAPIVRGRK GTHEKILENIKKNGFIRARIDGEMYDLTEEEVKLDKNKKHNIEAIIDRIVIKEDIEKRITDSIEMALKLADGLVIANVVG KEDILFSENFACPDCSVSIDELAPRLFSFNSPFGKCDCCDGLGTLFEFDEDLVIPNKELSIMDGAVASWGAGRLKEESWT FAILKALEREYDLRLNVPIKDLSKEEVNLLFYGTGGKRIKVDYIKEGVKATYNYSYDGEINSLKRRYRETNSDYIKNEIE QYMSDSYCPKCKGARLKKEALSVKVGEKNIYEFTTMPINEELEFLNSLEFSPKNKIISEQVVKEIRNRLQFLLDVGLDYL NLSRKAGTLSGGESQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLKNLRDVGNTVIVVEHDEDTIMEADCIV DIGPRAGEHGGEVVAVGTIDEIKSCKESITGQYLRGEKCVEVPKERRKGNGKEIKVIGAKENNLKNVTATIPLETLTIVT GVSGSGKSTFVNEILYKGLNRLINKSKNPIGNHKEILGYENIDKIIDIDQSPIGRTPRSNPATYTGTFDVIRELFSQTNE AKMRGYNQGRFSFNVKGGRCEACSGDGIIKIEMQFLSDVYVPCEVCKGKRYNRETLEVKYKGKNIDDILNMTVEEALEFF ENIPRIKNKLKTLNDVGLGYIRLGQPSTQLSGGEAQRIKLASELSKRSTGKTLYILDEPTTGLHIDDVNRLIEILQRLVD AGNTVVVIEHNIDMIKCADYLIDLGPEGGDKGGTIVKTGTPEQISKCDKSYTGKYLKKLL
Sequences:
>Translated_940_residues MNDKIVIKGAKVNNLKNVSLEIPRDKLIVFTGLSGSGKSSLAFDTLYAEGQRRYVESLSSYARQFLGQMDKPDVEYIEGL SPAISIDQKTTSKNPRSTVGTITEIYDYLRLLYARVGIPHCPKCGKEISKQSVDQIVDKIISYGDKTKIQILAPIVRGRK GTHEKILENIKKNGFIRARIDGEMYDLTEEEVKLDKNKKHNIEAIIDRIVIKEDIEKRITDSIEMALKLADGLVIANVVG KEDILFSENFACPDCSVSIDELAPRLFSFNSPFGKCDCCDGLGTLFEFDEDLVIPNKELSIMDGAVASWGAGRLKEESWT FAILKALEREYDLRLNVPIKDLSKEEVNLLFYGTGGKRIKVDYIKEGVKATYNYSYDGEINSLKRRYRETNSDYIKNEIE QYMSDSYCPKCKGARLKKEALSVKVGEKNIYEFTTMPINEELEFLNSLEFSPKNKIISEQVVKEIRNRLQFLLDVGLDYL NLSRKAGTLSGGESQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLKNLRDVGNTVIVVEHDEDTIMEADCIV DIGPRAGEHGGEVVAVGTIDEIKSCKESITGQYLRGEKCVEVPKERRKGNGKEIKVIGAKENNLKNVTATIPLETLTIVT GVSGSGKSTFVNEILYKGLNRLINKSKNPIGNHKEILGYENIDKIIDIDQSPIGRTPRSNPATYTGTFDVIRELFSQTNE AKMRGYNQGRFSFNVKGGRCEACSGDGIIKIEMQFLSDVYVPCEVCKGKRYNRETLEVKYKGKNIDDILNMTVEEALEFF ENIPRIKNKLKTLNDVGLGYIRLGQPSTQLSGGEAQRIKLASELSKRSTGKTLYILDEPTTGLHIDDVNRLIEILQRLVD AGNTVVVIEHNIDMIKCADYLIDLGPEGGDKGGTIVKTGTPEQISKCDKSYTGKYLKKLL >Mature_940_residues MNDKIVIKGAKVNNLKNVSLEIPRDKLIVFTGLSGSGKSSLAFDTLYAEGQRRYVESLSSYARQFLGQMDKPDVEYIEGL SPAISIDQKTTSKNPRSTVGTITEIYDYLRLLYARVGIPHCPKCGKEISKQSVDQIVDKIISYGDKTKIQILAPIVRGRK GTHEKILENIKKNGFIRARIDGEMYDLTEEEVKLDKNKKHNIEAIIDRIVIKEDIEKRITDSIEMALKLADGLVIANVVG KEDILFSENFACPDCSVSIDELAPRLFSFNSPFGKCDCCDGLGTLFEFDEDLVIPNKELSIMDGAVASWGAGRLKEESWT FAILKALEREYDLRLNVPIKDLSKEEVNLLFYGTGGKRIKVDYIKEGVKATYNYSYDGEINSLKRRYRETNSDYIKNEIE QYMSDSYCPKCKGARLKKEALSVKVGEKNIYEFTTMPINEELEFLNSLEFSPKNKIISEQVVKEIRNRLQFLLDVGLDYL NLSRKAGTLSGGESQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLKNLRDVGNTVIVVEHDEDTIMEADCIV DIGPRAGEHGGEVVAVGTIDEIKSCKESITGQYLRGEKCVEVPKERRKGNGKEIKVIGAKENNLKNVTATIPLETLTIVT GVSGSGKSTFVNEILYKGLNRLINKSKNPIGNHKEILGYENIDKIIDIDQSPIGRTPRSNPATYTGTFDVIRELFSQTNE AKMRGYNQGRFSFNVKGGRCEACSGDGIIKIEMQFLSDVYVPCEVCKGKRYNRETLEVKYKGKNIDDILNMTVEEALEFF ENIPRIKNKLKTLNDVGLGYIRLGQPSTQLSGGEAQRIKLASELSKRSTGKTLYILDEPTTGLHIDDVNRLIEILQRLVD AGNTVVVIEHNIDMIKCADYLIDLGPEGGDKGGTIVKTGTPEQISKCDKSYTGKYLKKLL
Specific function: The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion h
COG id: COG0178
COG function: function code L; Excinuclease ATPase subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Escherichia coli, GI2367343, Length=945, Percent_Identity=55.6613756613757, Blast_Score=1072, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR013815 - InterPro: IPR003593 - InterPro: IPR004602 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 105166; Mature: 105166
Theoretical pI: Translated: 6.77; Mature: 6.77
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNDKIVIKGAKVNNLKNVSLEIPRDKLIVFTGLSGSGKSSLAFDTLYAEGQRRYVESLSS CCCCEEEEECCCCCCCCCEEECCCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHH YARQFLGQMDKPDVEYIEGLSPAISIDQKTTSKNPRSTVGTITEIYDYLRLLYARVGIPH HHHHHHCCCCCCCHHHHCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC CPKCGKEISKQSVDQIVDKIISYGDKTKIQILAPIVRGRKGTHEKILENIKKNGFIRARI CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHCCEEEEEE DGEMYDLTEEEVKLDKNKKHNIEAIIDRIVIKEDIEKRITDSIEMALKLADGLVIANVVG CCCHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECC KEDILFSENFACPDCSVSIDELAPRLFSFNSPFGKCDCCDGLGTLFEFDEDLVIPNKELS CCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHCHHHHHHCCCCEECCCCCCC IMDGAVASWGAGRLKEESWTFAILKALEREYDLRLNVPIKDLSKEEVNLLFYGTGGKRIK HHCCCHHCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCHHHCCCCCEEEEEEECCCCEEE VDYIKEGVKATYNYSYDGEINSLKRRYRETNSDYIKNEIEQYMSDSYCPKCKGARLKKEA HHHHHCCCCEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH LSVKVGEKNIYEFTTMPINEELEFLNSLEFSPKNKIISEQVVKEIRNRLQFLLDVGLDYL HEEEECCCCEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH NLSRKAGTLSGGESQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLKNLRDVG HCCCCCCCCCCCCCCCEEHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC NTVIVVEHDEDTIMEADCIVDIGPRAGEHGGEVVAVGTIDEIKSCKESITGQYLRGEKCV CEEEEEECCCCCEEECCEEEECCCCCCCCCCCEEEEECHHHHHHHHHHHCCCHHCCCHHH EVPKERRKGNGKEIKVIGAKENNLKNVTATIPLETLTIVTGVSGSGKSTFVNEILYKGLN CCCHHHCCCCCCEEEEEECCCCCCCEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHH RLINKSKNPIGNHKEILGYENIDKIIDIDQSPIGRTPRSNPATYTGTFDVIRELFSQTNE HHHHCCCCCCCCCHHHCCCCCHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCCH AKMRGYNQGRFSFNVKGGRCEACSGDGIIKIEMQFLSDVYVPCEVCKGKRYNRETLEVKY HHHCCCCCCEEEEEECCCEEECCCCCCEEEEEEHHHCCCCCCHHHHCCCCCCCCEEEEEE KGKNIDDILNMTVEEALEFFENIPRIKNKLKTLNDVGLGYIRLGQPSTQLSGGEAQRIKL CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHH ASELSKRSTGKTLYILDEPTTGLHIDDVNRLIEILQRLVDAGNTVVVIEHNIDMIKCADY HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH LIDLGPEGGDKGGTIVKTGTPEQISKCDKSYTGKYLKKLL HHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure MNDKIVIKGAKVNNLKNVSLEIPRDKLIVFTGLSGSGKSSLAFDTLYAEGQRRYVESLSS CCCCEEEEECCCCCCCCCEEECCCCEEEEEECCCCCCCCCEEHHHHHHHHHHHHHHHHHH YARQFLGQMDKPDVEYIEGLSPAISIDQKTTSKNPRSTVGTITEIYDYLRLLYARVGIPH HHHHHHCCCCCCCHHHHCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC CPKCGKEISKQSVDQIVDKIISYGDKTKIQILAPIVRGRKGTHEKILENIKKNGFIRARI CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHCCEEEEEE DGEMYDLTEEEVKLDKNKKHNIEAIIDRIVIKEDIEKRITDSIEMALKLADGLVIANVVG CCCHHCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECC KEDILFSENFACPDCSVSIDELAPRLFSFNSPFGKCDCCDGLGTLFEFDEDLVIPNKELS CCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHCHHHHHHCCCCEECCCCCCC IMDGAVASWGAGRLKEESWTFAILKALEREYDLRLNVPIKDLSKEEVNLLFYGTGGKRIK HHCCCHHCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCHHHCCCCCEEEEEEECCCCEEE VDYIKEGVKATYNYSYDGEINSLKRRYRETNSDYIKNEIEQYMSDSYCPKCKGARLKKEA HHHHHCCCCEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHH LSVKVGEKNIYEFTTMPINEELEFLNSLEFSPKNKIISEQVVKEIRNRLQFLLDVGLDYL HEEEECCCCEEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHH NLSRKAGTLSGGESQRIRLATQIGSSLMGVLYILDEPSIGLHQRDNDRLISTLKNLRDVG HCCCCCCCCCCCCCCCEEHHHHHHHHHEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCC NTVIVVEHDEDTIMEADCIVDIGPRAGEHGGEVVAVGTIDEIKSCKESITGQYLRGEKCV CEEEEEECCCCCEEECCEEEECCCCCCCCCCCEEEEECHHHHHHHHHHHCCCHHCCCHHH EVPKERRKGNGKEIKVIGAKENNLKNVTATIPLETLTIVTGVSGSGKSTFVNEILYKGLN CCCHHHCCCCCCEEEEEECCCCCCCEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHHHH RLINKSKNPIGNHKEILGYENIDKIIDIDQSPIGRTPRSNPATYTGTFDVIRELFSQTNE HHHHCCCCCCCCCHHHCCCCCHHHHHCCCCCCCCCCCCCCCCEECCHHHHHHHHHHCCCH AKMRGYNQGRFSFNVKGGRCEACSGDGIIKIEMQFLSDVYVPCEVCKGKRYNRETLEVKY HHHCCCCCCEEEEEECCCEEECCCCCCEEEEEEHHHCCCCCCHHHHCCCCCCCCEEEEEE KGKNIDDILNMTVEEALEFFENIPRIKNKLKTLNDVGLGYIRLGQPSTQLSGGEAQRIKL CCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHH ASELSKRSTGKTLYILDEPTTGLHIDDVNRLIEILQRLVDAGNTVVVIEHNIDMIKCADY HHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH LIDLGPEGGDKGGTIVKTGTPEQISKCDKSYTGKYLKKLL HHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11792842 [H]