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The map label for this gene is ysmB [H]

Identifier: 187932991

GI number: 187932991

Start: 3572584

End: 3573012

Strand: Reverse

Name: ysmB [H]

Synonym: CLL_A3391

Alternate gene names: 187932991

Gene position: 3573012-3572584 (Counterclockwise)

Preceding gene: 187935074

Following gene: 187935158

Centisome position: 94.02

GC content: 27.51

Gene sequence:

>429_bases
ATGTATAACTTAGATGATTGCATTGGTTTCATAACTAATAAAGGGGCTAAAATACTTTCAGATGAATTTAACAGAAGGCT
TCAGGAACATGATATGACTAGAGTTCAATGGATAGCATTATATTATATAGGTAAGACTAATGGTATTTTTCAGAAAGAGC
TTTCTGATAACATGAGTGTTAAAGAATCTTCTATGGTAAGACTTATAGATCGTATGGAAAAAGATGATTTAGTTGAAAGA
AGAAAAGAAATTAAAGATAGAAGAGTAACTAGAATATTTTTATCTGATAAGGGAAAAAAGTTAAGAGAAGAACTTATCCC
ATTAGGAGAAGAATTTCAGAGGGATGCAGTTAATGGTATATCAGAAGATGAATTGAATATTTTTAAAAATGTTTTAGAAA
AAATGATAAATAATGTATGTAAATATTGA

Upstream 100 bases:

>100_bases
ACATACCCTATATTTTTTTATAGATTATTAAATTAGTTGCTCTTAGTCTAAGGAGTATACTATAATTAAAGAATTGAAGA
AAATCAAAGGATGTGGGGAA

Downstream 100 bases:

>100_bases
CAATACCACTTTGATGTGGTATTTTTTATACAAAGATACTTGCTATGCTAAGTATTGCTATGTAAAGTAATTAAGAGAAT
ATAATTATATGGAGGTTTTT

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MYNLDDCIGFITNKGAKILSDEFNRRLQEHDMTRVQWIALYYIGKTNGIFQKELSDNMSVKESSMVRLIDRMEKDDLVER
RKEIKDRRVTRIFLSDKGKKLREELIPLGEEFQRDAVNGISEDELNIFKNVLEKMINNVCKY

Sequences:

>Translated_142_residues
MYNLDDCIGFITNKGAKILSDEFNRRLQEHDMTRVQWIALYYIGKTNGIFQKELSDNMSVKESSMVRLIDRMEKDDLVER
RKEIKDRRVTRIFLSDKGKKLREELIPLGEEFQRDAVNGISEDELNIFKNVLEKMINNVCKY
>Mature_142_residues
MYNLDDCIGFITNKGAKILSDEFNRRLQEHDMTRVQWIALYYIGKTNGIFQKELSDNMSVKESSMVRLIDRMEKDDLVER
RKEIKDRRVTRIFLSDKGKKLREELIPLGEEFQRDAVNGISEDELNIFKNVLEKMINNVCKY

Specific function: Transcription Factor That Activates Expression Of Genes Such As Molecular Chaperones (Grol, Gros, Dnak, Grpe, And Cbpa), Proteins Involved In Acid Resistance (Hdea, Hdeb, And Gada), The Starvation Lipoprotein Slp, Virulence Protein Hlye/Clya. Represses Ex

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16841; Mature: 16841

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNLDDCIGFITNKGAKILSDEFNRRLQEHDMTRVQWIALYYIGKTNGIFQKELSDNMSV
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHEECCCCCHHHHHHHCCCCH
KESSMVRLIDRMEKDDLVERRKEIKDRRVTRIFLSDKGKKLREELIPLGEEFQRDAVNGI
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCC
SEDELNIFKNVLEKMINNVCKY
CHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYNLDDCIGFITNKGAKILSDEFNRRLQEHDMTRVQWIALYYIGKTNGIFQKELSDNMSV
CCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHEECCCCCHHHHHHHCCCCH
KESSMVRLIDRMEKDDLVERRKEIKDRRVTRIFLSDKGKKLREELIPLGEEFQRDAVNGI
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCC
SEDELNIFKNVLEKMINNVCKY
CHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]