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The map label for this gene is licA [H]

Identifier: 187932657

GI number: 187932657

Start: 1443471

End: 1444313

Strand: Reverse

Name: licA [H]

Synonym: CLL_A1400

Alternate gene names: 187932657

Gene position: 1444313-1443471 (Counterclockwise)

Preceding gene: 187934000

Following gene: 187932871

Centisome position: 38.0

GC content: 23.01

Gene sequence:

>843_bases
ATGAATGAAGAGTTATTGTTTTTATTAAAACAAAATACTAATTGGAATACTAATCTCATTACCTCTGTAAAAAAAATTGG
TGGACTTAATAATAATAACTATAAAGTTTCATATAATGGTGATGATTTTTTTATTAGAATTTGTACCAATCTATATTTAG
ATCATGATAGAGCAACTGAATTTCAAATTATAAATAAAGCTTCTGCTATTAGTTTAACTCCTAAACCCTATTATTTTTCT
ATCAAAAGTGGTAATATGATTCTTCCTTGGATAAATGGTAACATGCCTACTGAAGATGAATTCTCATCTATTAATTTTAT
TAACAAATTGACTAAAAGATTAAAAGAACTTCATAATTTAAATTGTGAAAAGCTCTTCGAACCTTTTAATCATATAAAAA
CTAGAATTGATTTATGTAAAAAATTTAATATCTCTTTACCTAATTATATTGATACACTTTCAAAAAAATTAAATTATCTA
GAATTTGTTCTAAATAATAATCCAACTATAGGTTTATGTCACAATGATCTTAATTGTTCAAATATACTTCTTTCAAATAA
CAACTTATATTTTATTGATTATGAATATTCAGCCATGGGCGATGTTTTTTGGGATCTTGCTACAATATCGTGGTTGCTTG
ATGATAATTGTAGGAAAGATTTATTAATACAATATTTTGGTTATTATAAAGAAGAAGATTATAAAAAACTATTAGATTTT
TTATATGTAGTTAAATTTTATAATGCAACATGGGCATTATTAAAAACTAAAGATCCAAATAATGATTATGATTATCTTAA
TGGCGCTAATATTATTTTTGAAGATTTAAGACAAAACTCTTAA

Upstream 100 bases:

>100_bases
TCCTTTATTAAACTTTGCAAAAATTTCTTATTCCCTTTTCTAGTTTTTTTTGTTATAATCTTTTATTATTTTATATAAAT
GAATTAGGAGAATACTTTAA

Downstream 100 bases:

>100_bases
ATAATTAATCTATCGTCGTCCAAATGTCTAACGCAAGTGAGTTAACCTATAATTATACTAAATTTCCTTTTGCATTTTCT
TCATTTTTCTTTTTTGATTT

Product: choline/ethanolamine kinase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MNEELLFLLKQNTNWNTNLITSVKKIGGLNNNNYKVSYNGDDFFIRICTNLYLDHDRATEFQIINKASAISLTPKPYYFS
IKSGNMILPWINGNMPTEDEFSSINFINKLTKRLKELHNLNCEKLFEPFNHIKTRIDLCKKFNISLPNYIDTLSKKLNYL
EFVLNNNPTIGLCHNDLNCSNILLSNNNLYFIDYEYSAMGDVFWDLATISWLLDDNCRKDLLIQYFGYYKEEDYKKLLDF
LYVVKFYNATWALLKTKDPNNDYDYLNGANIIFEDLRQNS

Sequences:

>Translated_280_residues
MNEELLFLLKQNTNWNTNLITSVKKIGGLNNNNYKVSYNGDDFFIRICTNLYLDHDRATEFQIINKASAISLTPKPYYFS
IKSGNMILPWINGNMPTEDEFSSINFINKLTKRLKELHNLNCEKLFEPFNHIKTRIDLCKKFNISLPNYIDTLSKKLNYL
EFVLNNNPTIGLCHNDLNCSNILLSNNNLYFIDYEYSAMGDVFWDLATISWLLDDNCRKDLLIQYFGYYKEEDYKKLLDF
LYVVKFYNATWALLKTKDPNNDYDYLNGANIIFEDLRQNS
>Mature_280_residues
MNEELLFLLKQNTNWNTNLITSVKKIGGLNNNNYKVSYNGDDFFIRICTNLYLDHDRATEFQIINKASAISLTPKPYYFS
IKSGNMILPWINGNMPTEDEFSSINFINKLTKRLKELHNLNCEKLFEPFNHIKTRIDLCKKFNISLPNYIDTLSKKLNYL
EFVLNNNPTIGLCHNDLNCSNILLSNNNLYFIDYEYSAMGDVFWDLATISWLLDDNCRKDLLIQYFGYYKEEDYKKLLDF
LYVVKFYNATWALLKTKDPNNDYDYLNGANIIFEDLRQNS

Specific function: Unknown

COG id: COG0510

COG function: function code M; Predicted choline kinase involved in LPS biosynthesis

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002573
- InterPro:   IPR011009 [H]

Pfam domain/function: PF01633 Choline_kinase [H]

EC number: NA

Molecular weight: Translated: 32987; Mature: 32987

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEELLFLLKQNTNWNTNLITSVKKIGGLNNNNYKVSYNGDDFFIRICTNLYLDHDRATE
CCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCEEEEEEEHHHHCCCCCCCE
FQIINKASAISLTPKPYYFSIKSGNMILPWINGNMPTEDEFSSINFINKLTKRLKELHNL
EEEECCCCEEEECCCCEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
NCEKLFEPFNHIKTRIDLCKKFNISLPNYIDTLSKKLNYLEFVLNNNPTIGLCHNDLNCS
CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEEECCCCEEEEEECCCCCC
NILLSNNNLYFIDYEYSAMGDVFWDLATISWLLDDNCRKDLLIQYFGYYKEEDYKKLLDF
EEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHH
LYVVKFYNATWALLKTKDPNNDYDYLNGANIIFEDLRQNS
HHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MNEELLFLLKQNTNWNTNLITSVKKIGGLNNNNYKVSYNGDDFFIRICTNLYLDHDRATE
CCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEECCCEEEEEEEHHHHCCCCCCCE
FQIINKASAISLTPKPYYFSIKSGNMILPWINGNMPTEDEFSSINFINKLTKRLKELHNL
EEEECCCCEEEECCCCEEEEEECCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
NCEKLFEPFNHIKTRIDLCKKFNISLPNYIDTLSKKLNYLEFVLNNNPTIGLCHNDLNCS
CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEEECCCCEEEEEECCCCCC
NILLSNNNLYFIDYEYSAMGDVFWDLATISWLLDDNCRKDLLIQYFGYYKEEDYKKLLDF
EEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHH
LYVVKFYNATWALLKTKDPNNDYDYLNGANIIFEDLRQNS
HHHHHHHCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8233831 [H]