Definition | Borrelia hermsii DAH chromosome, complete genome. |
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Accession | NC_010673 |
Length | 922,307 |
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The map label for this gene is 187918542
Identifier: 187918542
GI number: 187918542
Start: 733754
End: 734692
Strand: Direct
Name: 187918542
Synonym: BH0686
Alternate gene names: NA
Gene position: 733754-734692 (Clockwise)
Preceding gene: 187918541
Following gene: 187918543
Centisome position: 79.56
GC content: 31.52
Gene sequence:
>939_bases GTGAAGATTAGATGTAAGGCAAATCCTAGTTTGGCGTTAATTAAGTATTGGGGCAAGAGAGATAAATTTTTGAATATTCC AGCTACTTCAAGCATTGCCGTAAGTGTTGATAAATTTTATTCAATAAGCGAACTTGAATTATCATGTAAGGATGAAATAA TTTTAAATTCAAGGGCTATTGTATTACAAGAGAGGGAAATAAATTTTTTTAATTATGCAAGGAAAATTTTAAATGAGCCA AATGTTGGATTTAGGGTAATTAGTGAAAATAATTTTCCAACAGCCGCAGGACTTGCAAGTTCAAGCTCTGGGTTTGCATC TATTGCTGCTTGTATTTTAAGATATTTTAATCAATATTCCCATCAAAAAGCTTCACAGCTTGCAAGAATAGGCTCAGCTT CAGCGGCAAGAGCTATTTATGGTGGATTTACCTTTTTAAAGGAAGGGGCCAGGAGTGCATTTCAGTTAAATAATTTTAAT TATTTTAATGATTTGTGCATAATATTTGCTATAGTTGATAGCAGAAAAAAAGATATGTCTTCAAGGGCTGCCATGGAGAT TTGCAAGCAGGAGAAATTTTATTGGGATGCTTGGATTAAGTCTAGTCGAAATATATTTAAAGAAGCTTTATTTTTTTTGT TAAAAGGAGATTTTAACGAATTTGGTCTTAAGATTGTAAAAAGTTATCAGTGTATGTTTGCTTTAATGTTATCATCTTCC ATTATTTATTTTAAAAGTAATACTATAGAGTTAATAAAGTATATTGCTGCTCTTAGAAGTAGAGGTATTTCTGTTTTTGA AACGATGGATGCTGGGCCACAGGTTAAGGTGTTGTGCCTAAAGAAAGATTTGGAATTAGTTTTAACTGAACTTACTAGCA ATTTTAGAGATGTTGATTTTATTGTTTCAAGGATTGGAAGTGGTTTGGAATGGATATAA
Upstream 100 bases:
>100_bases TCAAGTGATGAGATAGAAAAAATATTATTGAAAATGAGTGACAGTGGAATTTATTCTCTTGATTTTGCTCTTAAACTTTT AAAGGATTTGCGAGTGTAGT
Downstream 100 bases:
>100_bases TTAATTTTTCAGTGCCTGGTAATTTACTTTTAATGGGTGAATATTTTATTTTGGAAGAAAATGGTCTTGGACTTGCAATT GCAATCAAAGAAAGAGCTTA
Product: diphosphomevalonate decarboxylase
Products: NA
Alternate protein names: Mevalonate Pyrophosphate Decarboxylase; Mevalonate Diphosphate Decarboxylase
Number of amino acids: Translated: 312; Mature: 312
Protein sequence:
>312_residues MKIRCKANPSLALIKYWGKRDKFLNIPATSSIAVSVDKFYSISELELSCKDEIILNSRAIVLQEREINFFNYARKILNEP NVGFRVISENNFPTAAGLASSSSGFASIAACILRYFNQYSHQKASQLARIGSASAARAIYGGFTFLKEGARSAFQLNNFN YFNDLCIIFAIVDSRKKDMSSRAAMEICKQEKFYWDAWIKSSRNIFKEALFFLLKGDFNEFGLKIVKSYQCMFALMLSSS IIYFKSNTIELIKYIAALRSRGISVFETMDAGPQVKVLCLKKDLELVLTELTSNFRDVDFIVSRIGSGLEWI
Sequences:
>Translated_312_residues MKIRCKANPSLALIKYWGKRDKFLNIPATSSIAVSVDKFYSISELELSCKDEIILNSRAIVLQEREINFFNYARKILNEP NVGFRVISENNFPTAAGLASSSSGFASIAACILRYFNQYSHQKASQLARIGSASAARAIYGGFTFLKEGARSAFQLNNFN YFNDLCIIFAIVDSRKKDMSSRAAMEICKQEKFYWDAWIKSSRNIFKEALFFLLKGDFNEFGLKIVKSYQCMFALMLSSS IIYFKSNTIELIKYIAALRSRGISVFETMDAGPQVKVLCLKKDLELVLTELTSNFRDVDFIVSRIGSGLEWI >Mature_312_residues MKIRCKANPSLALIKYWGKRDKFLNIPATSSIAVSVDKFYSISELELSCKDEIILNSRAIVLQEREINFFNYARKILNEP NVGFRVISENNFPTAAGLASSSSGFASIAACILRYFNQYSHQKASQLARIGSASAARAIYGGFTFLKEGARSAFQLNNFN YFNDLCIIFAIVDSRKKDMSSRAAMEICKQEKFYWDAWIKSSRNIFKEALFFLLKGDFNEFGLKIVKSYQCMFALMLSSS IIYFKSNTIELIKYIAALRSRGISVFETMDAGPQVKVLCLKKDLELVLTELTSNFRDVDFIVSRIGSGLEWI
Specific function: Unknown
COG id: COG3407
COG function: function code I; Mevalonate pyrophosphate decarboxylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI4505289, Length=313, Percent_Identity=29.073482428115, Blast_Score=77, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17537201, Length=339, Percent_Identity=29.4985250737463, Blast_Score=80, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6324371, Length=203, Percent_Identity=31.5270935960591, Blast_Score=76, Evalue=8e-15, Organism=Drosophila melanogaster, GI28571205, Length=327, Percent_Identity=26.605504587156, Blast_Score=80, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35362; Mature: 35362
Theoretical pI: Translated: 9.66; Mature: 9.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIRCKANPSLALIKYWGKRDKFLNIPATSSIAVSVDKFYSISELELSCKDEIILNSRAI CEEEECCCCCEEEEEECCCCCCEEECCCCCCEEEEHHHHCCHHHHEECCCCCEEECCCEE VLQEREINFFNYARKILNEPNVGFRVISENNFPTAAGLASSSSGFASIAACILRYFNQYS EEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHH HQKASQLARIGSASAARAIYGGFTFLKEGARSAFQLNNFNYFNDLCIIFAIVDSRKKDMS HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHH SRAAMEICKQEKFYWDAWIKSSRNIFKEALFFLLKGDFNEFGLKIVKSYQCMFALMLSSS HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC IIYFKSNTIELIKYIAALRSRGISVFETMDAGPQVKVLCLKKDLELVLTELTSNFRDVDF EEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHCCCCHHHH IVSRIGSGLEWI HHHHHCCCCCCC >Mature Secondary Structure MKIRCKANPSLALIKYWGKRDKFLNIPATSSIAVSVDKFYSISELELSCKDEIILNSRAI CEEEECCCCCEEEEEECCCCCCEEECCCCCCEEEEHHHHCCHHHHEECCCCCEEECCCEE VLQEREINFFNYARKILNEPNVGFRVISENNFPTAAGLASSSSGFASIAACILRYFNQYS EEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHH HQKASQLARIGSASAARAIYGGFTFLKEGARSAFQLNNFNYFNDLCIIFAIVDSRKKDMS HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHH SRAAMEICKQEKFYWDAWIKSSRNIFKEALFFLLKGDFNEFGLKIVKSYQCMFALMLSSS HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC IIYFKSNTIELIKYIAALRSRGISVFETMDAGPQVKVLCLKKDLELVLTELTSNFRDVDF EEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHCCCCHHHH IVSRIGSGLEWI HHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA