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The map label for this gene is rnpA

Identifier: 187918307

GI number: 187918307

Start: 464667

End: 465011

Strand: Direct

Name: rnpA

Synonym: BH0441

Alternate gene names: 187918307

Gene position: 464667-465011 (Clockwise)

Preceding gene: 187918306

Following gene: 187918308

Centisome position: 50.38

GC content: 28.12

Gene sequence:

>345_bases
ATGAAAGAAAGAAATATTAGCATAAAATCAAAGGTAGAAATTCAAGAGCTTTTTAAAAAAGGTAGATTTATTAGGATAGA
AGGGATTAATGTATTTTATGAGTTTACATGTTTAGCTATCTCTAGAATACTTGTTACCTTTCCTAGAATTTTTAAAGGTG
CTGTTAAGAGGAATCGTGTTCGGAGAATTTTTAAGGAATGTTTTAGAAAACAATTTGCTTTACTTAAAGATAGGTATGTT
GACTTTATTTTCGTAGTTTATCCTCAAAAAGCAGATGTTAATTATCATGAAGTTGAGACGATACTAAAGAATATAGTTGT
GTATATCATGAAGAGGAATATGTGA

Upstream 100 bases:

>100_bases
AACAGAAAATTTGGATTTAGGGCTAGGATGAAAACTAAGGGCGGAAGACTTATTCTTGCCAGAAGAAGAGCTAAGGGAAG
ATCAAAATTAACTGTTTCTG

Downstream 100 bases:

>100_bases
GTCAGAGTAAAAGAATTTTAAGAGCCATTTATTTGTCTTTATTTTTTATCGGTATTTTTATGATTATTGATGATATCTTT
TTCTCTCACAAATCTCCTTC

Product: ribonuclease P protein component

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MKERNISIKSKVEIQELFKKGRFIRIEGINVFYEFTCLAISRILVTFPRIFKGAVKRNRVRRIFKECFRKQFALLKDRYV
DFIFVVYPQKADVNYHEVETILKNIVVYIMKRNM

Sequences:

>Translated_114_residues
MKERNISIKSKVEIQELFKKGRFIRIEGINVFYEFTCLAISRILVTFPRIFKGAVKRNRVRRIFKECFRKQFALLKDRYV
DFIFVVYPQKADVNYHEVETILKNIVVYIMKRNM
>Mature_114_residues
MKERNISIKSKVEIQELFKKGRFIRIEGINVFYEFTCLAISRILVTFPRIFKGAVKRNRVRRIFKECFRKQFALLKDRYV
DFIFVVYPQKADVNYHEVETILKNIVVYIMKRNM

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_BORHD (B2S0E4)

Other databases:

- EMBL:   CP000048
- RefSeq:   YP_001883870.1
- EnsemblBacteria:   EBBORT00000006249
- GeneID:   6276527
- GenomeReviews:   CP000048_GR
- KEGG:   bhr:BH0441
- GeneTree:   EBGT00050000007545
- HOGENOM:   HBG354435
- OMA:   GSVKRNR
- ProtClustDB:   CLSK507595
- BioCyc:   BHER314723:BH0441-MONOMER
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 13845; Mature: 13845

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKERNISIKSKVEIQELFKKGRFIRIEGINVFYEFTCLAISRILVTFPRIFKGAVKRNRV
CCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRIFKECFRKQFALLKDRYVDFIFVVYPQKADVNYHEVETILKNIVVYIMKRNM
HHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKERNISIKSKVEIQELFKKGRFIRIEGINVFYEFTCLAISRILVTFPRIFKGAVKRNRV
CCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRIFKECFRKQFALLKDRYVDFIFVVYPQKADVNYHEVETILKNIVVYIMKRNM
HHHHHHHHHHHHHHHHHHHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA