| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is wxcX [H]
Identifier: 187732137
GI number: 187732137
Start: 1104479
End: 1105564
Strand: Direct
Name: wxcX [H]
Synonym: SbBS512_E1198
Alternate gene names: 187732137
Gene position: 1104479-1105564 (Clockwise)
Preceding gene: 187733398
Following gene: 187730059
Centisome position: 23.93
GC content: 31.4
Gene sequence:
>1086_bases TTGAAAGTTATAGCATTTTATTTACCACAATATCATGTGATTCCTGAAAATGACAAATGGTGGGGAGAAGGTTTTACAGA ATGGACAAATGTTAAAAGAGCAGTGCCTCTGTTTTCAGGTCATAATCAGCCACGAATACCACTTAATAATAATTATTATA ACTTGTTGGACAAGAATACATTGATTTGGCAAGCAGGTCTGGCCAATCAGTATAAAATTGGTGCAATGTGTTTTTATCAT TATTGGTTTTTAGGAAAACAACTGCTTGAAAAACCAGCAGAGATATTATTAGAAAATAAAGAAATTAATATGCCTTTTTT ATTTTCTTGGGCTAATGAACCTTGGACACGTGCTTGGGATGGTAGTCATAGAAATGTGCTTATGCCTCAGAGTTATGGTA CAGAAGCTGATTGGGAAAAACATTTTAATTATTTAAAGCCCTTTTTTGAAGATGAACGTTACTTAAAGCATGATGGAAAG CCGATTTTCATTATTTATCGTACTGCTAACTTTGCACTTTGTAATGAGTGGATCTCATGTTGGAGAGAGTTATCGAAGAA TACGAGTTTCAAAGATATACATTTTGTTAGTAGTTATACATCGTTTGAAAATGACCCAAGAAAGCTGGATTTTGATGCTC ATTTATATTTTGAACCTATGTGTACCGTTGGACATAACTTAGGTTACTTTAATAAAAAAATAAAAAAAATAAATGCAAGA TTAAAGAGAGTAATTAACCAAAAGTTTGGAACGACATATGTTGAAAATACTTTGCAATATGATTACTTATGGGAAAAGAT TTTGAAGAAAAAAATCAATAAAACACAATATCCTGGAGCATTTGTAGACTGGGATAATAGTGCCCGAAAAAAATCTAGAG CATTAGTTATTCATGGTGGTTCACCTAAAAAATTTGGACTTTATTTAGATAAGTTATATAAAAGAAGCATTGAAAATAAT TGTCCGTTTCTTTTCATTAATGCCTGGAATGAATGGGCTGAAGGGACATATCTGGAGCCAGATGAAAAAAATAAATACTC GTATTTAGAAGAATTAAAAAAAGTCATTGAAAAATATGAGGTATAG
Upstream 100 bases:
>100_bases CGTAGCAATATCAATAGTTTTTACTGAAACTATCATATCATTATTACTTACAATTTTTGCTATAAAAAACTCAGTTAATC ATTGAAAAAGAGGAAACGAA
Downstream 100 bases:
>100_bases TAGGTTATAAAAATGACGGAATTGGTTGAATTAGGTAGGAGAATAATTTGAAATTATATCGCCCGATAAAAAAATATTTG GTCATGTATATTTTTATACT
Product: WbwX
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 361; Mature: 361
Protein sequence:
>361_residues MKVIAFYLPQYHVIPENDKWWGEGFTEWTNVKRAVPLFSGHNQPRIPLNNNYYNLLDKNTLIWQAGLANQYKIGAMCFYH YWFLGKQLLEKPAEILLENKEINMPFLFSWANEPWTRAWDGSHRNVLMPQSYGTEADWEKHFNYLKPFFEDERYLKHDGK PIFIIYRTANFALCNEWISCWRELSKNTSFKDIHFVSSYTSFENDPRKLDFDAHLYFEPMCTVGHNLGYFNKKIKKINAR LKRVINQKFGTTYVENTLQYDYLWEKILKKKINKTQYPGAFVDWDNSARKKSRALVIHGGSPKKFGLYLDKLYKRSIENN CPFLFINAWNEWAEGTYLEPDEKNKYSYLEELKKVIEKYEV
Sequences:
>Translated_361_residues MKVIAFYLPQYHVIPENDKWWGEGFTEWTNVKRAVPLFSGHNQPRIPLNNNYYNLLDKNTLIWQAGLANQYKIGAMCFYH YWFLGKQLLEKPAEILLENKEINMPFLFSWANEPWTRAWDGSHRNVLMPQSYGTEADWEKHFNYLKPFFEDERYLKHDGK PIFIIYRTANFALCNEWISCWRELSKNTSFKDIHFVSSYTSFENDPRKLDFDAHLYFEPMCTVGHNLGYFNKKIKKINAR LKRVINQKFGTTYVENTLQYDYLWEKILKKKINKTQYPGAFVDWDNSARKKSRALVIHGGSPKKFGLYLDKLYKRSIENN CPFLFINAWNEWAEGTYLEPDEKNKYSYLEELKKVIEKYEV >Mature_361_residues MKVIAFYLPQYHVIPENDKWWGEGFTEWTNVKRAVPLFSGHNQPRIPLNNNYYNLLDKNTLIWQAGLANQYKIGAMCFYH YWFLGKQLLEKPAEILLENKEINMPFLFSWANEPWTRAWDGSHRNVLMPQSYGTEADWEKHFNYLKPFFEDERYLKHDGK PIFIIYRTANFALCNEWISCWRELSKNTSFKDIHFVSSYTSFENDPRKLDFDAHLYFEPMCTVGHNLGYFNKKIKKINAR LKRVINQKFGTTYVENTLQYDYLWEKILKKKINKTQYPGAFVDWDNSARKKSRALVIHGGSPKKFGLYLDKLYKRSIENN CPFLFINAWNEWAEGTYLEPDEKNKYSYLEELKKVIEKYEV
Specific function: Unknown
COG id: COG3754
COG function: function code M; Lipopolysaccharide biosynthesis protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007739 [H]
Pfam domain/function: PF05045 RgpF [H]
EC number: NA
Molecular weight: Translated: 43239; Mature: 43239
Theoretical pI: Translated: 9.14; Mature: 9.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVIAFYLPQYHVIPENDKWWGEGFTEWTNVKRAVPLFSGHNQPRIPLNNNYYNLLDKNT CCEEEEECCCEEEECCCCCCCCCCCHHHHHHHHHCHHHCCCCCCCCCCCCCEEEEECCCE LIWQAGLANQYKIGAMCFYHYWFLGKQLLEKPAEILLENKEINMPFLFSWANEPWTRAWD EEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEECCCCCCCCCC GSHRNVLMPQSYGTEADWEKHFNYLKPFFEDERYLKHDGKPIFIIYRTANFALCNEWISC CCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCEEEEEEECCCHHHHHHHHHH WRELSKNTSFKDIHFVSSYTSFENDPRKLDFDAHLYFEPMCTVGHNLGYFNKKIKKINAR HHHHHCCCCCCEEEEEHHHHCCCCCCCEECCCEEEEECCHHHHCCCCHHHHHHHHHHHHH LKRVINQKFGTTYVENTLQYDYLWEKILKKKINKTQYPGAFVDWDNSARKKSRALVIHGG HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCEEEEECC SPKKFGLYLDKLYKRSIENNCPFLFINAWNEWAEGTYLEPDEKNKYSYLEELKKVIEKYE CCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHC V C >Mature Secondary Structure MKVIAFYLPQYHVIPENDKWWGEGFTEWTNVKRAVPLFSGHNQPRIPLNNNYYNLLDKNT CCEEEEECCCEEEECCCCCCCCCCCHHHHHHHHHCHHHCCCCCCCCCCCCCEEEEECCCE LIWQAGLANQYKIGAMCFYHYWFLGKQLLEKPAEILLENKEINMPFLFSWANEPWTRAWD EEEECCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCEEEEECCCCCCCCCC GSHRNVLMPQSYGTEADWEKHFNYLKPFFEDERYLKHDGKPIFIIYRTANFALCNEWISC CCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCEEEEEEECCCHHHHHHHHHH WRELSKNTSFKDIHFVSSYTSFENDPRKLDFDAHLYFEPMCTVGHNLGYFNKKIKKINAR HHHHHCCCCCCEEEEEHHHHCCCCCCCEECCCEEEEECCHHHHCCCCHHHHHHHHHHHHH LKRVINQKFGTTYVENTLQYDYLWEKILKKKINKTQYPGAFVDWDNSARKKSRALVIHGG HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCEEEEECC SPKKFGLYLDKLYKRSIENNCPFLFINAWNEWAEGTYLEPDEKNKYSYLEELKKVIEKYE CCCHHHHHHHHHHHHHHCCCCCEEEEECCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHC V C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9385134 [H]