| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is stfR [C]
Identifier: 187730611
GI number: 187730611
Start: 936922
End: 937980
Strand: Direct
Name: stfR [C]
Synonym: SbBS512_E1014
Alternate gene names: 187730611
Gene position: 936922-937980 (Clockwise)
Preceding gene: 187730104
Following gene: 187733702
Centisome position: 20.3
GC content: 52.22
Gene sequence:
>1059_bases ATGTCTGTAGTGATATCAGGTGCGCTGACTGATGGCGCAGGCATCCCCATGTCCGGATGCCAGATTATTCTGAAATCCCG TGTAAACACCTCAGAAGTGGTGATGCGTACCAGGGCTGATGTAGTGACCGGAAATAACGGTGAATATTCGTTTGAGGCAC AGGTCGGAAAATATTGCGTGTATCTGAAACGGGACTGGCGCGACGAGTACTGTGTTGGCGACATTGCTGTATACGACGAC TCAAAGCCCGGCACTCTGAAAACGGCTAACCATCTGTCTGAAATCGCAGCAGCAGGCGAAAAGGCACAACAGAAGTCCCG GGATAATCTGGGGCTGAAAAGTGCGGCCACGATGGAAGCACAGAGCGACATTTACGACCGGACAAAAGGCCGTCTGGCGA TACCCGGCGCATTCGGCTTTGGGTGTGCTTTTCTGCCTGAAGATGTTATCCGTTTTGACACTAAGAGTGATTTCCAGGCC TGGGTAAGGAATGCGCTGCCAGGTGAATATTCCGTTGCTGGCCCCTACGACATCATCATACCCGACACACGGTTTGAAGG GGTGCTCAGCATCCGGTGGACTGATGCACGCCCTGAGACAACAGAACCGCGGTACAGAGCCAAATCCCTTACTTTTTACG GCATTAACGGCCCCATTTATCACACCCGCTACTGCTACTGGCCCATATCCAGACTGACTGACTGGGTGAAAATAAATATA ACCACAGAAGATATTATTTACAGAATCGTGGCGAGCTCTGTCCGCAACAGATGGGGAGACCCTGACATTGGCGGGCTGAT TATTGCTGCGTACCAGGGAGAAGCTGACGGTGATAAAGTCATCAGACTTGTCAGGGGGCAGTCATACAGAGGCTCACGAC TGGGACCGGTGGGGATTTCAGTGCCCAGTACTCCCACCGGAACGTATATAGCATCCCCACAATTTTTCATTACGGGATGT TCAGAGCATTCATTACCGGGGTCATATTGCGCCCTGTCCGGGGTGCCGGATGCTCATGTCTCTGGCGCAATGCCCGGGCT TTTTATTCGCACATCGTGA
Upstream 100 bases:
>100_bases TGGATTTCAGCGCCATCACTGATAAATCCTCATACAACGCCATTGAATGGCCCGTCTCTCCGGAAGGTTCTTCCTGATTT AATTTATCGCGAGAAAAACT
Downstream 100 bases:
>100_bases GGAATGCACCGTGGAAATTAAAAAAACCATTAATCCCCGTTATACCGAAAGTGGCGCAGTAGACTGTGACGTTTTTTTTG ACGACAGGGACCAGGCAGTT
Product: putative prophage tail fiber protein
Products: NA
Alternate protein names: Phage Tail Fiber Protein; Phage Tail Fibre Protein; Prophage Tail Fiber Protein
Number of amino acids: Translated: 352; Mature: 351
Protein sequence:
>352_residues MSVVISGALTDGAGIPMSGCQIILKSRVNTSEVVMRTRADVVTGNNGEYSFEAQVGKYCVYLKRDWRDEYCVGDIAVYDD SKPGTLKTANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFQA WVRNALPGEYSVAGPYDIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTDWVKINI TTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPSTPTGTYIASPQFFITGC SEHSLPGSYCALSGVPDAHVSGAMPGLFIRTS
Sequences:
>Translated_352_residues MSVVISGALTDGAGIPMSGCQIILKSRVNTSEVVMRTRADVVTGNNGEYSFEAQVGKYCVYLKRDWRDEYCVGDIAVYDD SKPGTLKTANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFQA WVRNALPGEYSVAGPYDIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTDWVKINI TTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPSTPTGTYIASPQFFITGC SEHSLPGSYCALSGVPDAHVSGAMPGLFIRTS >Mature_351_residues SVVISGALTDGAGIPMSGCQIILKSRVNTSEVVMRTRADVVTGNNGEYSFEAQVGKYCVYLKRDWRDEYCVGDIAVYDDS KPGTLKTANHLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFQAW VRNALPGEYSVAGPYDIIIPDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTDWVKINIT TEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPSTPTGTYIASPQFFITGCS EHSLPGSYCALSGVPDAHVSGAMPGLFIRTS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87081892, Length=87, Percent_Identity=41.3793103448276, Blast_Score=66, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38518; Mature: 38387
Theoretical pI: Translated: 7.33; Mature: 7.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVVISGALTDGAGIPMSGCQIILKSRVNTSEVVMRTRADVVTGNNGEYSFEAQVGKYCV CEEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCEEECCCCCEEEEECCCCEEE YLKRDWRDEYCVGDIAVYDDSKPGTLKTANHLSEIAAAGEKAQQKSRDNLGLKSAATMEA EEEECCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH QSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFQAWVRNALPGEYSVAGPYDIII HHHHHHCCCCCEEECCCCCCCCHHCCHHHHHCCCCHHHHHHHHHCCCCCEECCCCEEEEE PDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTDWVKINI CCCCCCEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEHHHCCCEEEEEE TTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGIS EHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHEECCCCCCCCCCCCEEEE VPSTPTGTYIASPQFFITGCSEHSLPGSYCALSGVPDAHVSGAMPGLFIRTS CCCCCCCCEEECCCEEEEECCCCCCCCCEEEECCCCCHHHCCCCCCEEEEEC >Mature Secondary Structure SVVISGALTDGAGIPMSGCQIILKSRVNTSEVVMRTRADVVTGNNGEYSFEAQVGKYCV EEEEEECCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCCEEECCCCCEEEEECCCCEEE YLKRDWRDEYCVGDIAVYDDSKPGTLKTANHLSEIAAAGEKAQQKSRDNLGLKSAATMEA EEEECCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH QSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDFQAWVRNALPGEYSVAGPYDIII HHHHHHCCCCCEEECCCCCCCCHHCCHHHHHCCCCHHHHHHHHHCCCCCEECCCCEEEEE PDTRFEGVLSIRWTDARPETTEPRYRAKSLTFYGINGPIYHTRYCYWPISRLTDWVKINI CCCCCCEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEHHHCCCEEEEEE TTEDIIYRIVASSVRNRWGDPDIGGLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGIS EHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHEECCCCCCCCCCCCEEEE VPSTPTGTYIASPQFFITGCSEHSLPGSYCALSGVPDAHVSGAMPGLFIRTS CCCCCCCCEEECCCEEEEECCCCCCCCCEEEECCCCCHHHCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA