Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736468
Identifier: 187736468
GI number: 187736468
Start: 2414860
End: 2416302
Strand: Direct
Name: 187736468
Synonym: Amuc_1988
Alternate gene names: NA
Gene position: 2414860-2416302 (Clockwise)
Preceding gene: 187736467
Following gene: 187736469
Centisome position: 90.64
GC content: 57.1
Gene sequence:
>1443_bases ATGAACAATAGAATCCGCCTTTCCCTGCTGCTGGCCCCGGCCTGCCTGCTGACCGCCTGGGCCAATTCCGTCATCGACGT GGTTACGGATAACAATTACCGCCTCCGCGGGGAAATCATTTCTTACGGGAAACAGGGCATCGTCATCAAGCACCCGGCCA TGCGCCAGAACGCCGTCATTCTCCCGTCGGGAATCCGCGCTCTTTACTTTACAGGAACCGCCTCTCCGGATCTTCGCGCC CGGGACAAAATTTTCATGGCTGCGGGGCACAGGGACATTATCCCGTGCAATATCATTTCCATCACACAGGACAAAGTGCA GTACCGGGACATGCTGGGCCATGAACGTTCCGTTCCCCGCAGCCAGGTGGCCGGGTTCCGGCTGAATACGCTGCAGGAAA AGGGCTTCTGGCAGGAACCGCTGATTTTTGACAACAGCTGGGTTTATTCCGGCAACCGGGAGGAAGACTACCGCACCCAG GCGGGGAGAAAACTGATGAATGCCCTGAAGCCGAAAGTCCAGGGGGACAAGTACCAGTACCGGCTGGGCAACAATGATTA CCCCACCTGGATACCCCTGTACAAGAATATCGGCCTGGATCCTTCCTCCTTCACCTTCCGCACCACCATCACCATGGACG GCAATAATGACCGCTCCGGCATTGTCTTCTGTTTCGGGGGGAATGAAAATATTCCTTTCCGGTCCAATTCCGGCAGCAAC CTGAACAGGCTCATGCTCAGCATCTCGCCCGGAAAATGCACCCTGCTCCGGGAACAGAAATCCGGCATCCTCGTGCTGGG GGAAGCGGCCATTCCGGCCCCCATTCTGACGGAGGGCGTGGATATTCAATTGACAGCCTCCCGCCAGGGTGGAAACAAGC AGGTTTACGAGCTGTTGATAGGCGATCTGCCGCCCAGACTGATAACAGACCCCAGCCCGCCGGAACAGCCATTACAGGGA GACGCCTTCGGCCTCCAGATGGAAGGGCACGTGTCCCTGACCATCAGCAAACTGGCCCTTTCCTCCATCACCCTGAGCGC CAAATCCGTGGCCAAAAACGGGAATGCAGAGACAGACCTTGTCCTGACAAAGGAAGAAGACGCCATTCCGGGTTCCGTCA GCGGTTACGACAGCAAAACCGGAACGCTGACGCTTTCCACGGACAAGGATTATCCGGGCATTCCCCGTGATTTTTCCATC CCGGCCAAGTATCTGGATACCGTCTTTTTTGCGGAACAGAACAGGAAAGACGACTCCCGCCCCCCAGCCCGCCACAGCCT CCAGATGAAGGACGGTTCCCGCCTGCACGGAGATATTCTGAGCATGGATTCCCTGAATATCATCCTGCGGCATCCGCAGC TCGGACAGATTTCCCTGCCGCTGAAAAACATCACCCGCGTGGAATTCCTGAATCCCGCCCAGCCATCCCGTTCCACTCCC TGA
Upstream 100 bases:
>100_bases CAGGCGCCCAACGGGTCCTGGCTTTCCGATCATTCCGCGGCATATTCCACTTCCGCCGCCCTGCTTTCCCTTGCGCTTAA TTACAGATTTCTACCCATCT
Downstream 100 bases:
>100_bases TTGATCCCGCCATGAAACAGGCAATTACGCTTTTCCTGTGCGCCTGCGCCCTGCCGACCGCTCTCCTTCTGCCCCATGCT CGTGCGGAAGGTGTCATTAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 480; Mature: 480
Protein sequence:
>480_residues MNNRIRLSLLLAPACLLTAWANSVIDVVTDNNYRLRGEIISYGKQGIVIKHPAMRQNAVILPSGIRALYFTGTASPDLRA RDKIFMAAGHRDIIPCNIISITQDKVQYRDMLGHERSVPRSQVAGFRLNTLQEKGFWQEPLIFDNSWVYSGNREEDYRTQ AGRKLMNALKPKVQGDKYQYRLGNNDYPTWIPLYKNIGLDPSSFTFRTTITMDGNNDRSGIVFCFGGNENIPFRSNSGSN LNRLMLSISPGKCTLLREQKSGILVLGEAAIPAPILTEGVDIQLTASRQGGNKQVYELLIGDLPPRLITDPSPPEQPLQG DAFGLQMEGHVSLTISKLALSSITLSAKSVAKNGNAETDLVLTKEEDAIPGSVSGYDSKTGTLTLSTDKDYPGIPRDFSI PAKYLDTVFFAEQNRKDDSRPPARHSLQMKDGSRLHGDILSMDSLNIILRHPQLGQISLPLKNITRVEFLNPAQPSRSTP
Sequences:
>Translated_480_residues MNNRIRLSLLLAPACLLTAWANSVIDVVTDNNYRLRGEIISYGKQGIVIKHPAMRQNAVILPSGIRALYFTGTASPDLRA RDKIFMAAGHRDIIPCNIISITQDKVQYRDMLGHERSVPRSQVAGFRLNTLQEKGFWQEPLIFDNSWVYSGNREEDYRTQ AGRKLMNALKPKVQGDKYQYRLGNNDYPTWIPLYKNIGLDPSSFTFRTTITMDGNNDRSGIVFCFGGNENIPFRSNSGSN LNRLMLSISPGKCTLLREQKSGILVLGEAAIPAPILTEGVDIQLTASRQGGNKQVYELLIGDLPPRLITDPSPPEQPLQG DAFGLQMEGHVSLTISKLALSSITLSAKSVAKNGNAETDLVLTKEEDAIPGSVSGYDSKTGTLTLSTDKDYPGIPRDFSI PAKYLDTVFFAEQNRKDDSRPPARHSLQMKDGSRLHGDILSMDSLNIILRHPQLGQISLPLKNITRVEFLNPAQPSRSTP >Mature_480_residues MNNRIRLSLLLAPACLLTAWANSVIDVVTDNNYRLRGEIISYGKQGIVIKHPAMRQNAVILPSGIRALYFTGTASPDLRA RDKIFMAAGHRDIIPCNIISITQDKVQYRDMLGHERSVPRSQVAGFRLNTLQEKGFWQEPLIFDNSWVYSGNREEDYRTQ AGRKLMNALKPKVQGDKYQYRLGNNDYPTWIPLYKNIGLDPSSFTFRTTITMDGNNDRSGIVFCFGGNENIPFRSNSGSN LNRLMLSISPGKCTLLREQKSGILVLGEAAIPAPILTEGVDIQLTASRQGGNKQVYELLIGDLPPRLITDPSPPEQPLQG DAFGLQMEGHVSLTISKLALSSITLSAKSVAKNGNAETDLVLTKEEDAIPGSVSGYDSKTGTLTLSTDKDYPGIPRDFSI PAKYLDTVFFAEQNRKDDSRPPARHSLQMKDGSRLHGDILSMDSLNIILRHPQLGQISLPLKNITRVEFLNPAQPSRSTP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53152; Mature: 53152
Theoretical pI: Translated: 9.31; Mature: 9.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNRIRLSLLLAPACLLTAWANSVIDVVTDNNYRLRGEIISYGKQGIVIKHPAMRQNAVI CCCEEEEEEEHHHHHHHHHHHCCEEEEEECCCEEEEEEHEECCCCCEEEECCCCCCCEEE LPSGIRALYFTGTASPDLRARDKIFMAAGHRDIIPCNIISITQDKVQYRDMLGHERSVPR EECCCEEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEEEECHHHHHHHHHHCCCCCCCH SQVAGFRLNTLQEKGFWQEPLIFDNSWVYSGNREEDYRTQAGRKLMNALKPKVQGDKYQY HHHCCEEEEHHHHCCCCCCCEEECCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE RLGNNDYPTWIPLYKNIGLDPSSFTFRTTITMDGNNDRSGIVFCFGGNENIPFRSNSGSN EECCCCCCCEEEHHHHCCCCCCCEEEEEEEEECCCCCCCCEEEEECCCCCCCEECCCCCC LNRLMLSISPGKCTLLREQKSGILVLGEAAIPAPILTEGVDIQLTASRQGGNKQVYELLI CEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCHHCCCCEEEEEECCCCCCHHHHHHHH GDLPPRLITDPSPPEQPLQGDAFGLQMEGHVSLTISKLALSSITLSAKSVAKNGNAETDL HCCCCHHCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEHHHHEEEHHHHHCCCCCCEEE VLTKEEDAIPGSVSGYDSKTGTLTLSTDKDYPGIPRDFSIPAKYLDTVFFAEQNRKDDSR EEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHEEEECCCCCCCCC PPARHSLQMKDGSRLHGDILSMDSLNIILRHPQLGQISLPLKNITRVEFLNPAQPSRSTP CCHHCEEECCCCCCCCCCEEEECCCEEEEECCCCCEEECCHHHCCEEEEECCCCCCCCCC >Mature Secondary Structure MNNRIRLSLLLAPACLLTAWANSVIDVVTDNNYRLRGEIISYGKQGIVIKHPAMRQNAVI CCCEEEEEEEHHHHHHHHHHHCCEEEEEECCCEEEEEEHEECCCCCEEEECCCCCCCEEE LPSGIRALYFTGTASPDLRARDKIFMAAGHRDIIPCNIISITQDKVQYRDMLGHERSVPR EECCCEEEEEECCCCCCCCCCCEEEEEECCCCCCEEEEEEECHHHHHHHHHHCCCCCCCH SQVAGFRLNTLQEKGFWQEPLIFDNSWVYSGNREEDYRTQAGRKLMNALKPKVQGDKYQY HHHCCEEEEHHHHCCCCCCCEEECCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE RLGNNDYPTWIPLYKNIGLDPSSFTFRTTITMDGNNDRSGIVFCFGGNENIPFRSNSGSN EECCCCCCCEEEHHHHCCCCCCCEEEEEEEEECCCCCCCCEEEEECCCCCCCEECCCCCC LNRLMLSISPGKCTLLREQKSGILVLGEAAIPAPILTEGVDIQLTASRQGGNKQVYELLI CEEEEEEECCCCEEEEEECCCCEEEEECCCCCCCHHCCCCEEEEEECCCCCCHHHHHHHH GDLPPRLITDPSPPEQPLQGDAFGLQMEGHVSLTISKLALSSITLSAKSVAKNGNAETDL HCCCCHHCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEHHHHEEEHHHHHCCCCCCEEE VLTKEEDAIPGSVSGYDSKTGTLTLSTDKDYPGIPRDFSIPAKYLDTVFFAEQNRKDDSR EEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHEEEECCCCCCCCC PPARHSLQMKDGSRLHGDILSMDSLNIILRHPQLGQISLPLKNITRVEFLNPAQPSRSTP CCHHCEEECCCCCCCCCCEEEECCCEEEEECCCCCEEECCHHHCCEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA