Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736366
Identifier: 187736366
GI number: 187736366
Start: 2288115
End: 2289485
Strand: Direct
Name: 187736366
Synonym: Amuc_1883
Alternate gene names: NA
Gene position: 2288115-2289485 (Clockwise)
Preceding gene: 187736362
Following gene: 187736367
Centisome position: 85.89
GC content: 57.18
Gene sequence:
>1371_bases ATGATCAGTTTTACCAATATCAGCGGGGCCGAGGAAATTGGGGCCAATTGCTATTTGCTTGAGATGGACGGCACCAGGAT TGTGCTTGACAGCGGGATGCACCCCAAGAAGGAGGGGAAGGCGGCCATGCCGGATTTTGATTCCCTGGAACCCAATTCCG TGGAAGCCGTTTTTTTAAGCCATTCCCACCTGGACCATCTGGGAACGCTGCCTGTGCTTCAGGAGAAACAGCCAGCGGCG GAGGTGTTCATGACGCCCGCCGCGGCAGCCCTGTCTGAAGTGATGCTGCATAATTCCGTGAATGTGATGAGCGCCAAGAG GCTGGACCTGGGCATTGTGGAGTATCCTTTTTTCACCCATAATGATCTGGACAGATTGAGCGACGCCTGGCATGCCAAGT CCTGCAATGAAGTGTTTCGCGTGGGCTTCCGCCAGAACGTGCTGGCCACGTTTTACGATGCCGGGCACATCCTGGGGTCT GCCGGCGTGATGCTGGAGGGTGAGAGCGGCCATACCGTATTTTATACGGGGGACGTGCAGTTTGAAGACCAGAGCATGAT TCCCGGGGCTGATTTTCCGGAATCCGGCGTAGATACGCTGGTTATGGAGTGCACGCGCGGCGGTTTCCAGCGCAGCGCCC ACTATTCCCGGCCGGAAGAGATGGTGAGGTTCGGGAAAGCGATTGCGGAGACGCTGGAACGCGGCGGCGCCGTACTGATT CCGGTATTCGCCATCGGCAAGAGCCAGGAGATGCTGTTCAACATTCACCGTTTCAAGCAGCAGGGGGTGATTCCCGCCAA TACTCCCGTGTACTTCGGCGGGCTGAGCGCGAAAGTTTCCCTGTTGTACGACCGTTTTGCCGGGTTGACGCGCAGGCATG ACCATGAATTCAAGCTGAAGGAGGAGATTCAGACCGTGCCCCTTCCGCGCAAGGGAAAAGCTCCGCTGGTGTGTTCCCCG GGGAATATTTATGTGGTGTCCAGCGGCATGATGACGGAAAATACGCTTTCCAACGTCATGGCGGAGCAGGTTCTTCCCCA GGAGAAGAATGCTATTTTGTTCGTAGGATATGCGGATCCTGATTCTCCGGCGGGACTGCTGAAGGCAACTCCTGAAGGGG AACTGGTGAAAATGAGGCCCAACGGGCAGCCGGTGCGCCGCAAGTGCACCGTGGACTGTTTTGATTTTTCCGGGCATGCC ACCCGGGACTCCCTGGTTAATTATGCCGTGAAGCTGAACCCCAGGCAGGTGGTTCTGGTGCACGGGGACCCGGATGCCGT GGAGTGGATGCACCACACGCTATCCGCCAAAATGCCTGATTCCACCATCGTCGTTCCTGAGCCGGGACGCCGCTACACTT TCGAGCCATGA
Upstream 100 bases:
>100_bases CTTCTTCCCCATTGGCCTGCGTTCCCTTCCCGGCAGAGGTCCGCTTGGGCTTGCGGCATTGACACGGCGGGAGGCACGGG GTACTCTCCTGCGGCATATA
Downstream 100 bases:
>100_bases GTTTTACCGGAGAAAGAAAGGGGAGGCTGATCGTCTTTGAAGGCATTGACGGCACGGGCAAGTCCACCCACATCGGCCAC TTGCGAAAGTATTTGGAGGA
Product: beta-lactamase domain protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 456; Mature: 456
Protein sequence:
>456_residues MISFTNISGAEEIGANCYLLEMDGTRIVLDSGMHPKKEGKAAMPDFDSLEPNSVEAVFLSHSHLDHLGTLPVLQEKQPAA EVFMTPAAAALSEVMLHNSVNVMSAKRLDLGIVEYPFFTHNDLDRLSDAWHAKSCNEVFRVGFRQNVLATFYDAGHILGS AGVMLEGESGHTVFYTGDVQFEDQSMIPGADFPESGVDTLVMECTRGGFQRSAHYSRPEEMVRFGKAIAETLERGGAVLI PVFAIGKSQEMLFNIHRFKQQGVIPANTPVYFGGLSAKVSLLYDRFAGLTRRHDHEFKLKEEIQTVPLPRKGKAPLVCSP GNIYVVSSGMMTENTLSNVMAEQVLPQEKNAILFVGYADPDSPAGLLKATPEGELVKMRPNGQPVRRKCTVDCFDFSGHA TRDSLVNYAVKLNPRQVVLVHGDPDAVEWMHHTLSAKMPDSTIVVPEPGRRYTFEP
Sequences:
>Translated_456_residues MISFTNISGAEEIGANCYLLEMDGTRIVLDSGMHPKKEGKAAMPDFDSLEPNSVEAVFLSHSHLDHLGTLPVLQEKQPAA EVFMTPAAAALSEVMLHNSVNVMSAKRLDLGIVEYPFFTHNDLDRLSDAWHAKSCNEVFRVGFRQNVLATFYDAGHILGS AGVMLEGESGHTVFYTGDVQFEDQSMIPGADFPESGVDTLVMECTRGGFQRSAHYSRPEEMVRFGKAIAETLERGGAVLI PVFAIGKSQEMLFNIHRFKQQGVIPANTPVYFGGLSAKVSLLYDRFAGLTRRHDHEFKLKEEIQTVPLPRKGKAPLVCSP GNIYVVSSGMMTENTLSNVMAEQVLPQEKNAILFVGYADPDSPAGLLKATPEGELVKMRPNGQPVRRKCTVDCFDFSGHA TRDSLVNYAVKLNPRQVVLVHGDPDAVEWMHHTLSAKMPDSTIVVPEPGRRYTFEP >Mature_456_residues MISFTNISGAEEIGANCYLLEMDGTRIVLDSGMHPKKEGKAAMPDFDSLEPNSVEAVFLSHSHLDHLGTLPVLQEKQPAA EVFMTPAAAALSEVMLHNSVNVMSAKRLDLGIVEYPFFTHNDLDRLSDAWHAKSCNEVFRVGFRQNVLATFYDAGHILGS AGVMLEGESGHTVFYTGDVQFEDQSMIPGADFPESGVDTLVMECTRGGFQRSAHYSRPEEMVRFGKAIAETLERGGAVLI PVFAIGKSQEMLFNIHRFKQQGVIPANTPVYFGGLSAKVSLLYDRFAGLTRRHDHEFKLKEEIQTVPLPRKGKAPLVCSP GNIYVVSSGMMTENTLSNVMAEQVLPQEKNAILFVGYADPDSPAGLLKATPEGELVKMRPNGQPVRRKCTVDCFDFSGHA TRDSLVNYAVKLNPRQVVLVHGDPDAVEWMHHTLSAKMPDSTIVVPEPGRRYTFEP
Specific function: Unknown
COG id: COG1236
COG function: function code J; Predicted exonuclease of the beta-lactamase fold involved in RNA processing
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the metallo-beta-lactamase superfamily. RNA-metabolizing metallo-beta-lactamase-like family [H]
Homologues:
Organism=Homo sapiens, GI7706427, Length=443, Percent_Identity=28.6681715575621, Blast_Score=174, Evalue=2e-43, Organism=Homo sapiens, GI33300633, Length=449, Percent_Identity=25.1670378619154, Blast_Score=129, Evalue=4e-30, Organism=Caenorhabditis elegans, GI32566029, Length=450, Percent_Identity=27.1111111111111, Blast_Score=159, Evalue=2e-39, Organism=Caenorhabditis elegans, GI32564696, Length=447, Percent_Identity=25.2796420581655, Blast_Score=122, Evalue=3e-28, Organism=Saccharomyces cerevisiae, GI6323307, Length=446, Percent_Identity=26.0089686098655, Blast_Score=150, Evalue=3e-37, Organism=Drosophila melanogaster, GI24648013, Length=447, Percent_Identity=26.8456375838926, Blast_Score=159, Evalue=3e-39, Organism=Drosophila melanogaster, GI21358523, Length=449, Percent_Identity=25.6124721603563, Blast_Score=139, Evalue=5e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022712 - InterPro: IPR001279 - InterPro: IPR011108 [H]
Pfam domain/function: PF10996 Beta-Casp; PF00753 Lactamase_B; PF07521 RMMBL [H]
EC number: NA
Molecular weight: Translated: 50211; Mature: 50211
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISFTNISGAEEIGANCYLLEMDGTRIVLDSGMHPKKEGKAAMPDFDSLEPNSVEAVFLS CEEECCCCCHHHHCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEE HSHLDHLGTLPVLQEKQPAAEVFMTPAAAALSEVMLHNSVNVMSAKRLDLGIVEYPFFTH CCCHHHHCCCCCCCCCCCHHHEEECHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCC NDLDRLSDAWHAKSCNEVFRVGFRQNVLATFYDAGHILGSAGVMLEGESGHTVFYTGDVQ CCHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCEE FEDQSMIPGADFPESGVDTLVMECTRGGFQRSAHYSRPEEMVRFGKAIAETLERGGAVLI ECCCCCCCCCCCCCCCHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEE PVFAIGKSQEMLFNIHRFKQQGVIPANTPVYFGGLSAKVSLLYDRFAGLTRRHDHEFKLK EEEECCCCHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCEEH EEIQTVPLPRKGKAPLVCSPGNIYVVSSGMMTENTLSNVMAEQVLPQEKNAILFVGYADP HHHHHCCCCCCCCCCEEECCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCC DSPAGLLKATPEGELVKMRPNGQPVRRKCTVDCFDFSGHATRDSLVNYAVKLNPRQVVLV CCCCCEEEECCCCCEEEECCCCCCCCEEEEEEEEECCCCCCHHHHHEEEEEECCEEEEEE HGDPDAVEWMHHTLSAKMPDSTIVVPEPGRRYTFEP ECCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC >Mature Secondary Structure MISFTNISGAEEIGANCYLLEMDGTRIVLDSGMHPKKEGKAAMPDFDSLEPNSVEAVFLS CEEECCCCCHHHHCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEE HSHLDHLGTLPVLQEKQPAAEVFMTPAAAALSEVMLHNSVNVMSAKRLDLGIVEYPFFTH CCCHHHHCCCCCCCCCCCHHHEEECHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCC NDLDRLSDAWHAKSCNEVFRVGFRQNVLATFYDAGHILGSAGVMLEGESGHTVFYTGDVQ CCHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCEE FEDQSMIPGADFPESGVDTLVMECTRGGFQRSAHYSRPEEMVRFGKAIAETLERGGAVLI ECCCCCCCCCCCCCCCHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEE PVFAIGKSQEMLFNIHRFKQQGVIPANTPVYFGGLSAKVSLLYDRFAGLTRRHDHEFKLK EEEECCCCHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCEEH EEIQTVPLPRKGKAPLVCSPGNIYVVSSGMMTENTLSNVMAEQVLPQEKNAILFVGYADP HHHHHCCCCCCCCCCEEECCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCC DSPAGLLKATPEGELVKMRPNGQPVRRKCTVDCFDFSGHATRDSLVNYAVKLNPRQVVLV CCCCCEEEECCCCCEEEECCCCCCCCEEEEEEEEECCCCCCHHHHHEEEEEECCEEEEEE HGDPDAVEWMHHTLSAKMPDSTIVVPEPGRRYTFEP ECCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]