Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
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Accession | NC_010655 |
Length | 2,664,102 |
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The map label for this gene is 187736351
Identifier: 187736351
GI number: 187736351
Start: 2270391
End: 2271578
Strand: Reverse
Name: 187736351
Synonym: Amuc_1868
Alternate gene names: NA
Gene position: 2271578-2270391 (Counterclockwise)
Preceding gene: 187736352
Following gene: 187736346
Centisome position: 85.27
GC content: 53.45
Gene sequence:
>1188_bases ATGAGCAACATTTCCCTCACTTTCGTTGCGCATCAGCCCAACCGGCTGATTCATTATGACTTCTTCAAAATTGGAGAACA TGCCTTTTATGAAGATGATGATCTGAATGCCCGCGTGCTTAGCACGGTGGCGGAGCGCTGTTATTTCCCGGCAACCCGGC TGATGAAACAGCTTATTGAACTCACCGGGGGCAAATTCCGCTTTGGGCTGGCGCTCAGCGGAGTCATTCTGGAACAGGCC CTGTACCACAGGCCGGACCTGATTGCCGCATTCAAGGATCTGGCGGAAACCGGCTGTGTGGACTTTCTGGCAATGCCTTA TTACAATTCCCTGGCATCCGTTTACTCCCCTCAGGAATTTGCCGAACAGATTGAAGAACACCGGGAGCTTCTCAAAAAAC TCTTCCATCAGGAAACGGATGTGCTGATGAATACCGGCATGCTGTACTCCAACGCCATTGCGGCGCAGGCGGAAACGCTC GGTTTCAAGGGCATCATGGCGGACGGCAACCCGGCCATGCTCAAGGGATTTACCAGCAATGAAGTCTTCCTGGCTCCGTG GGTGTATAACACCACCACTATCTTCCGCAACCGGGAACTCTCCAATGACCTGGCAATCATGCGGACTGATCCGGAATGGT CGGAATACCCGCTTTCCCCCACCACTTTCGCGGATTGGCTGACGCACCAGCAGGGAAGCGTCACTACCCTGTCCATGGAC TATGAAACTCTGGGGGAACGACAGTCTGACGCTACAGGCGTCTTCGAATTCTGGCGTACGATGATTCTCGCCTGCATAGA CGCCGGCAACCGGTTCATGACTCCGTCCGAAGTAGCGCAGGAAATCAAGCCCGTTTCCGTCTGTGAGTGCACCCAGGAAA TGACCTGCTCCACTTTTGGAACCATGTCCCATTGGAATGGCAACGTCATGCAGGATGAAGCCCTCCGCAAAATCTACCGT CTGGAAAAACCGGTCAAGGCAGCCCATGACAAGGATCTCACCCACGTTTGGCGCAAACTGCAGAGCGCGGACCACTTCCA CTACATGCAGAAGGAAAACTCCTTCACGCCGTATGCATCCGCCTTTGACGCGTACATTTACTACATGAACGCTTTGGCAG ATTTGCAAATACGCGTCAAAAGAGAATCCGGAAAACCGGTTCAGCCGGATCCGGAAAAAGCGTCCTGA
Upstream 100 bases:
>100_bases CCGCCGCAGACAAGGTTATCCGGGTCTATGAACATGTGCTGAACCGCTAAAAACGCCTTTTTACCCTACTCCATAACTCT CAGCCTTCTTCACCCCGTCC
Downstream 100 bases:
>100_bases CCTCTTCTCTTCCGAATACTGCGAACCCGGGTGGATTATAGTCTGCCGGGAACATCACGGGACGGTTTCCGGCTGTAAAA ACTTTGCGGTTCCGGAATGC
Product: glycoside hydrolase family 57
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 395; Mature: 394
Protein sequence:
>395_residues MSNISLTFVAHQPNRLIHYDFFKIGEHAFYEDDDLNARVLSTVAERCYFPATRLMKQLIELTGGKFRFGLALSGVILEQA LYHRPDLIAAFKDLAETGCVDFLAMPYYNSLASVYSPQEFAEQIEEHRELLKKLFHQETDVLMNTGMLYSNAIAAQAETL GFKGIMADGNPAMLKGFTSNEVFLAPWVYNTTTIFRNRELSNDLAIMRTDPEWSEYPLSPTTFADWLTHQQGSVTTLSMD YETLGERQSDATGVFEFWRTMILACIDAGNRFMTPSEVAQEIKPVSVCECTQEMTCSTFGTMSHWNGNVMQDEALRKIYR LEKPVKAAHDKDLTHVWRKLQSADHFHYMQKENSFTPYASAFDAYIYYMNALADLQIRVKRESGKPVQPDPEKAS
Sequences:
>Translated_395_residues MSNISLTFVAHQPNRLIHYDFFKIGEHAFYEDDDLNARVLSTVAERCYFPATRLMKQLIELTGGKFRFGLALSGVILEQA LYHRPDLIAAFKDLAETGCVDFLAMPYYNSLASVYSPQEFAEQIEEHRELLKKLFHQETDVLMNTGMLYSNAIAAQAETL GFKGIMADGNPAMLKGFTSNEVFLAPWVYNTTTIFRNRELSNDLAIMRTDPEWSEYPLSPTTFADWLTHQQGSVTTLSMD YETLGERQSDATGVFEFWRTMILACIDAGNRFMTPSEVAQEIKPVSVCECTQEMTCSTFGTMSHWNGNVMQDEALRKIYR LEKPVKAAHDKDLTHVWRKLQSADHFHYMQKENSFTPYASAFDAYIYYMNALADLQIRVKRESGKPVQPDPEKAS >Mature_394_residues SNISLTFVAHQPNRLIHYDFFKIGEHAFYEDDDLNARVLSTVAERCYFPATRLMKQLIELTGGKFRFGLALSGVILEQAL YHRPDLIAAFKDLAETGCVDFLAMPYYNSLASVYSPQEFAEQIEEHRELLKKLFHQETDVLMNTGMLYSNAIAAQAETLG FKGIMADGNPAMLKGFTSNEVFLAPWVYNTTTIFRNRELSNDLAIMRTDPEWSEYPLSPTTFADWLTHQQGSVTTLSMDY ETLGERQSDATGVFEFWRTMILACIDAGNRFMTPSEVAQEIKPVSVCECTQEMTCSTFGTMSHWNGNVMQDEALRKIYRL EKPVKAAHDKDLTHVWRKLQSADHFHYMQKENSFTPYASAFDAYIYYMNALADLQIRVKRESGKPVQPDPEKAS
Specific function: Unknown
COG id: COG1449
COG function: function code G; Alpha-amylase/alpha-mannosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 57 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011330 - InterPro: IPR004300 [H]
Pfam domain/function: PF03065 Glyco_hydro_57 [H]
EC number: =3.2.1.1 [H]
Molecular weight: Translated: 45096; Mature: 44964
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNISLTFVAHQPNRLIHYDFFKIGEHAFYEDDDLNARVLSTVAERCYFPATRLMKQLIE CCCEEEEEEEECCCCEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH LTGGKFRFGLALSGVILEQALYHRPDLIAAFKDLAETGCVDFLAMPYYNSLASVYSPQEF HCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH AEQIEEHRELLKKLFHQETDVLMNTGMLYSNAIAAQAETLGFKGIMADGNPAMLKGFTSN HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCC EVFLAPWVYNTTTIFRNRELSNDLAIMRTDPEWSEYPLSPTTFADWLTHQQGSVTTLSMD CEEEEEEEECCEEEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEC YETLGERQSDATGVFEFWRTMILACIDAGNRFMTPSEVAQEIKPVSVCECTQEMTCSTFG HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHC TMSHWNGNVMQDEALRKIYRLEKPVKAAHDKDLTHVWRKLQSADHFHYMQKENSFTPYAS CHHCCCCCCCHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCCCCCHHH AFDAYIYYMNALADLQIRVKRESGKPVQPDPEKAS HHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCC >Mature Secondary Structure SNISLTFVAHQPNRLIHYDFFKIGEHAFYEDDDLNARVLSTVAERCYFPATRLMKQLIE CCEEEEEEEECCCCEEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH LTGGKFRFGLALSGVILEQALYHRPDLIAAFKDLAETGCVDFLAMPYYNSLASVYSPQEF HCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH AEQIEEHRELLKKLFHQETDVLMNTGMLYSNAIAAQAETLGFKGIMADGNPAMLKGFTSN HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEECCCHHEEECCCCC EVFLAPWVYNTTTIFRNRELSNDLAIMRTDPEWSEYPLSPTTFADWLTHQQGSVTTLSMD CEEEEEEEECCEEEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEC YETLGERQSDATGVFEFWRTMILACIDAGNRFMTPSEVAQEIKPVSVCECTQEMTCSTFG HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHC TMSHWNGNVMQDEALRKIYRLEKPVKAAHDKDLTHVWRKLQSADHFHYMQKENSFTPYAS CHHCCCCCCCHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHCCHHHHHHHCCCCCCCHHH AFDAYIYYMNALADLQIRVKRESGKPVQPDPEKAS HHHHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]